diff --git a/_oasis b/_oasis deleted file mode 100644 index 550de06..0000000 --- a/_oasis +++ /dev/null @@ -1,151 +0,0 @@ -OASISFormat: 0.2 -Name: biocaml -Version: 0.3-dev -Synopsis: The OCaml Bioinformatics Library -Homepage: http://biocaml.org -Authors: Biocaml Team -License: LGPL with OCaml linking exception -Plugins: META (0.2) -BuildTools: ocamlbuild - -Flag lwt - Description: Build Lwt dependencies - Default: false - -Flag oldapps - Description: Build secondary apps - Default: false - -Flag tests - Description: Build tests - Default: false - -Flag app - Description: Build the biocaml CLI application (requires Flow) - Default: false - -Library biocaml - Path: src/lib - FindlibName: biocaml - BuildDepends: core, sexplib.syntax, threads, zip, unix, xmlm, pcre - XMETARequires: core, threads, zip, unix, xmlm, pcre - Install: true - Modules: Biocaml - , Biocaml_internal_pervasives - , Biocaml_transform - , Biocaml_msg - , Biocaml_zip - , Biocaml_bam - , Biocaml_pos - , Biocaml_about - , Biocaml_accu - , Biocaml_bar - , Biocaml_bed - , Biocaml_bpmap - , Biocaml_cel - , Biocaml_chr - , Biocaml_entrez - , Biocaml_fasta - , Biocaml_fastq - , Biocaml_genomeMap - , Biocaml_gff - , Biocaml_histogram - , Biocaml_interval_tree - , Biocaml_iset - , Biocaml_jaspar - , Biocaml_line - , Biocaml_lines - , Biocaml_math - , Biocaml_phred_score - , Biocaml_psl - , Biocaml_pwm - , Biocaml_range - , Biocaml_roc - , Biocaml_romanNum - , Biocaml_rSet - , Biocaml_sam - , Biocaml_sbml - , Biocaml_seq - , Biocaml_solexa_score - , Biocaml_sgr - , Biocaml_strandName - , Biocaml_stream - , Biocaml_streamable - , Biocaml_track - , Biocaml_tags - , Biocaml_vcf - , Biocaml_wig - , Biocaml_mzData - , Biocaml_table - , Biocaml_transcripts - CSources: biocaml_pwm_stub.c, biocaml_mzData_stubs.c - CCOpt: -O3 - -Executable gff_counts - Path: src/app - MainIs: gff_counts.ml - Build$: flag(oldapps) - BuildDepends: getopt, biocaml - CompiledObject: best - -Executable gff_to_bed - Path: src/app - MainIs: gff_to_bed.ml - Build$: flag(oldapps) - BuildDepends: getopt, biocaml - CompiledObject: best - -Executable gff_to_table - Path: src/app - MainIs: gff_to_table.ml - Build$: flag(oldapps) - BuildDepends: getopt, biocaml - CompiledObject: best - -Executable sgr_to_wig - Path: src/app - MainIs: sgr_to_wig.ml - Build$: flag(oldapps) - BuildDepends: getopt, biocaml - CompiledObject: best - -Executable wig_correlate - Path: src/app - MainIs: wig_correlate.ml - Build$: flag(oldapps) - BuildDepends: getopt, biocaml - CompiledObject: best - -Executable biocaml - Path: src/app - MainIs: biocaml_main.ml - Build$: flag(app) - BuildDepends: flow, biocaml - CompiledObject: best - -Executable tests_main - Path: src/tests - MainIs: main.ml - Install: false - CompiledObject: native - Build$: flag(tests) - BuildDepends: threads, unix, oUnit (>= 1.1.0), biocaml - -Executable zip_benchmark - Path: src/tests - MainIs: zip_benchmark.ml - Install: false - CompiledObject: native - Build$: flag(tests) - BuildDepends: threads, biocaml - -Executable lwt_tests - Path: src/lwt_tests - MainIs: main.ml - Install: false - CompiledObject: native - Build$: flag(lwt) && flag(tests) - BuildDepends: biocaml, lwt.unix - -Test main - Command: $tests_main diff --git a/_tags b/_tags deleted file mode 100644 index 4d4f885..0000000 --- a/_tags +++ /dev/null @@ -1,6 +0,0 @@ -# OASIS_START -# OASIS_STOP - -: syntax_camlp4o - -true: annot, debug