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all: Update protobuf package 1.0.0 -> 1.2.0 #5452
Also adds a few file global options to keep the generated code similar to what we already had.
Newness. I had a memory that there was some complication in this upgrade that I wanted to sort out, but it does not appear such now.
Not much beyond the units, but the generated code doesn't appear to differ significantly apart from a bunch of new