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Accessing the SBML Model Variables

.. currentmodule:: RoadRunner

The following methods allow users to obtain information on the model

Compartments

.. autosummary::

   ExecutableModel.getCompartmentVolumes
   ExecutableModel.getNumCompartments
   ExecutableModel.getCompartmentIds
   ExecutableModel.setCompartmentVolumes


Boundary Species

.. autosummary::

   ExecutableModel.getBoundarySpeciesConcentrations
   ExecutableModel.setBoundarySpeciesConcentrations
   ExecutableModel.getNumBoundarySpecies
   ExecutableModel.getBoundarySpeciesIds


Floating Species

.. autosummary::

   ExecutableModel.getFloatingSpeciesConcentrations
   ExecutableModel.setFloatingSpeciesConcentrations
   ExecutableModel.getNumFloatingSpecies
   ExecutableModel.getFloatingSpeciesIds


Initial Conditions

.. autosummary::

   ExecutableModel.getFloatingSpeciesInitAmountIds
   ExecutableModel.getFloatingSpeciesInitConcentrationIds
   ExecutableModel.getFloatingSpeciesInitAmounts
   ExecutableModel.setFloatingSpeciesInitAmounts
   ExecutableModel.getFloatingSpeciesInitConcentrations
   ExecutableModel.setFloatingSpeciesInitConcentrations

Reactions

.. autosummary::

   ExecutableModel.getNumReactions
   ExecutableModel.getReactionRates
   ExecutableModel.getReactionIds


Reaction Rates

.. autosummary::

   ExecutableModel.getFloatingSpeciesAmountRates
   ExecutableModel.getReactionRates
   ExecutableModel.getNumReactions
   ExecutableModel.getReactionIds


Global Parameters

.. autosummary::

   ExecutableModel.setGlobalParameterValues
   ExecutableModel.getGlobalParameterValues
   ExecutableModel.getNumGlobalParameters
   ExecutableModel.getNumGlobalParameters