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Organizations

@SciLifeLab @NationalGenomicsInfrastructure

Pinned repositories

  1. Sarek

    Forked from SciLifeLab/Sarek

    Cancer Analysis Workflow prototype

    Nextflow

  2. icing

    Forked from NationalGenomicsInfrastructure/icing

    An attempt to make HLA typing from OxfordNanopore reads (MinION platform)

    Python

  3. NGI-RNAfusion

    Forked from SciLifeLab/NGI-RNAfusion

    Attempt at setting up a pipeline for fusion detection as an addon to the previously existing NGI-RNAseq pipeline.

    Groovy

  4. pathfindr

    Forked from NBISweden/pathfindr

    R code for variant prioritization, intended for use with Sarek

    R

  5. simpanel

    Simulating a tumour gene panel for NGS

    Shell 1

273 contributions in the last year

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November 2018

szilvajuhos has no activity yet for this period.

October 2018

Created a pull request in SciLifeLab/Sarek that received 1 comment

Changing VEP to v92 and adjusting CPUs

PR checklist PR is made against dev branch Looks Singularity v2.5 and VEP 91 are not able to work together, so both needed version update Ensur…

+9 −7 • 1 comment

Created an issue in epam/NGB that received 3 comments

Lucene is missing from release 2.5.1.374.1

Hullo, seems the latest release (catgenome-2.5.1.374.1.jar) is missing the Lucene jar: Caused by: java.lang.IllegalArgumentException: An SPI class …

3 comments

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