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Organizations

@SciLifeLab @NationalGenomicsInfrastructure

Pinned

  1. Forked from SciLifeLab/Sarek

    Cancer Analysis Workflow prototype

    Nextflow

  2. Forked from NationalGenomicsInfrastructure/icing

    An attempt to make HLA typing from OxfordNanopore reads (MinION platform)

    Python

  3. Forked from SciLifeLab/NGI-RNAfusion

    Attempt at setting up a pipeline for fusion detection as an addon to the previously existing NGI-RNAseq pipeline.

    Groovy

  4. Forked from NBISweden/pathfindr

    R code for variant prioritization, intended for use with Sarek

    R

  5. Simulating a tumour gene panel for NGS

    Shell 1

203 contributions in the last year

May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Mon Wed Fri

Contribution activity

May 2019

Created a pull request in SciLifeLab/Sarek that received 2 comments

Mutect2 GATK4 with filtering and Panel-Of-Normals

PR checklist PR is made against dev branch This comment contains a description of changes Ensure the test suite passes (./scripts/test.sh -p do…

+468 −38 2 comments
1 contribution in private repositories May 15

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