Vagrant-based ReproPhylo
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ReproPhylo is a reproducible phylogenetics pipeline. See

This Vagrantfile creates a Ubuntu 14.04 LTS image with a working ReproPhylo installation.

Run the following to start the VM:

git clone
cd ReproPhyloVagrant
vagrant up
vagrant ssh

Once in the VM you can run to start the Jupyter notebook server.
This will be accessible through your web browser at https://localhost:8888/.
The default password for the notebook server is reprophylo.

This is a fork of
Thanks to Dr. Steve Moss