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When you configure a relationship metadata, you can choose in which metadata you will search for items in the related collection.
Nowadays you can choose more than one metadata but taxonomies are excluded. That happens because when merging a
We decided to allow the user to choose only one metadatum in the target collection to search for items. This way, we can bring back the taxonomies.
Also, we will evaluate the possibility to add another option to the metadata to choose which field should be displayed when listing the related items.