fast online optimal population inference (foopi)
Objective-C
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data-real
data-test
glmnet
oopsi
pi_get_omega.m
pi_infer_connectivity.m
pi_load_data.m
pi_plot_inference.m
pi_plot_nonlinearity.m
pi_run_inference_fast.m
pi_spike_inference.m
readme.txt
run_pi.m

readme.txt

Population Inference
5/28/2010
tamachado, Columbia University

***

look at run_pi.m for details on how to use these files. 

this code relies upon josh vogelstein's spike inference algorithm (http://github.com/jovo/fast-oopsi) as well as the glmnet/l1 regularization path fitting code by friedman, hastie, and tibshirani (http://www-stat.stanford.edu/~tibs/glmnet-matlab/).

note that the glmnet code has precompiled mex functions, but i've run everything successfully on windows, macos, and linux and so you probably won't have problems.