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Pinned repositories

  1. treesub

    A small program (which glues together other programs) that allows a user to input a codon alignment in FASTA format and produce an annotated phylogenetic tree showing which substitutions occurred o…

    Java 12 3

  2. swmutsel

    Implementation of the site-wise mutation-selection model (swMutSel) described in Tamuri et al. Genetics. (2012, 2014)

    Java 2 2

  3. tdg09

    Software and data used in Tamuri AU, dos Reis M, Hay AJ, Goldstein RA (2009) Identifying Changes in Selective Constraints: Host Shifts in Influenza. PLoS Comput Biol 5(11): e1000564 doi:10.1371/jou…

    Java 1 1

  4. dng

    Archschema: graphs of related Pfam domain architectures ("domain network graphs")

    Java 1

  5. pal

    Mirror of Drummond, A., & Strimmer, K. (2001). PAL: an object-oriented programming library for molecular evolution and phylogenetics.

    Java 2

  6. tdg12

    This program is no longer being updated. Please use the implementation at

    Java 2

230 contributions in the last year

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Contribution activity

October 2018

22 contributions in private repositories Oct 3 – Oct 15

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