From 82a6ee840dae03f3a9353532345b4cc1dcb64442 Mon Sep 17 00:00:00 2001
From: Haibao Tang <htang@humanlongevity.com>
Date: Wed, 27 Dec 2017 17:10:20 -0800
Subject: [PATCH] [allhic] Add dir structure

---
 allhic.go => main.go | 7 +++++++
 1 file changed, 7 insertions(+)
 rename allhic.go => main.go (77%)

diff --git a/allhic.go b/main.go
similarity index 77%
rename from allhic.go
rename to main.go
index b560e4f..29f9380 100644
--- a/allhic.go
+++ b/main.go
@@ -2,6 +2,9 @@ package main
 
 import (
 	"fmt"
+
+	"./allhic"
+
 	"github.com/docopt/docopt-go"
 )
 
@@ -18,4 +21,8 @@ Options:
 
 	arguments, _ := docopt.Parse(usage, nil, true, "ALLHIC 0.7.11", false)
 	fmt.Println(arguments)
+
+	p := allhic.Partitioner{"tests/prunning.sub.bam"}
+	fmt.Println(p.Bamfile)
+	p.CountLinks()
 }