diff --git a/makefile b/makefile index 94c719d..b468fc3 100755 --- a/makefile +++ b/makefile @@ -330,7 +330,6 @@ dnld_anno_uniprot: # tests/test_nbt3102.py \ # tests/test_optional_fields.py \ # tests/test_dnlds.py \ -# tests/test_get_godag.py \ # tests/test_gpad_dnld.py \ # # tests/test_plot_get_parents.py \ @@ -347,50 +346,51 @@ dnld_anno_uniprot: # tests/test_quickgo_xml.py \ NOSETESTS := \ - tests/test_study_zero.py \ - tests/test_annotations_gaf.py::test_gaf_read_fb \ - tests/test_parents_ancestors.py \ - tests/test_rpt_gene2go_evidencecodes.py \ - tests/test_sorter_sections.py \ - tests/test_sorter_desc2nts.py \ - tests/test_compare_gos.py \ - tests/test_wr_sections_txt.py \ - tests/test_altid_gosubdag.py \ - tests/test_dcnt_r01.py \ - tests/test_grprobj.py \ - tests/test_grpr_get_sections_2d.py \ - tests/test_sorter.py \ - tests/test_gosubdag_relationships.py \ - tests/test_go_depth1.py \ - tests/test_i92_relationship_parentchild.py \ - tests/test_i96_goea_ncbi.py \ - tests/test_gosearch_emptydict.py \ - tests/test_david_nts.py \ - tests/test_get_parents.py \ - tests/test_get_children.py \ - tests/test_optional_attributes.py \ - tests/test_genes_cell_cycle.py \ - tests/test_semantic_similarity.py \ - tests/test_goea_errors.py \ - tests/test_ncbi_entrez_annotations.py \ - tests/test_wr_tbl_subset.py \ - tests/test_goea_local.py \ - tests/test_write_hier.py \ + tests/test_altid_godag.py \ + tests/test_altid_gosubdag.py \ + tests/test_annotations_gaf.py::test_gaf_read_fb \ tests/test_cli_write_hierarchy.py \ - tests/test_go_print.py \ - tests/test_read_gaf_allow_nd.py \ - tests/test_write_summary_cnts.py \ - tests/test_pvalcalc.py \ - tests/test_altid_godag.py \ - tests/test_combine_nt_lists.py \ - tests/test_get_paths.py \ - tests/test_get_unique_fields.py \ - tests/test_go_draw.py \ - tests/test_goea_statsmodels.py \ - tests/test_goea_rpt_bonferroni.py \ - tests/test_wr_py_goea_results.py \ - tests/test_mapslim.py \ - tests/test_multiple_testing.py + tests/test_combine_nt_lists.py \ + tests/test_compare_gos.py \ + tests/test_david_nts.py \ + tests/test_dcnt_r01.py \ + tests/test_genes_cell_cycle.py \ + tests/test_get_children.py \ + tests/test_get_godag.py \ + tests/test_get_parents.py \ + tests/test_get_paths.py \ + tests/test_get_unique_fields.py \ + tests/test_go_depth1.py \ + tests/test_go_draw.py \ + tests/test_go_print.py \ + tests/test_goea_errors.py \ + tests/test_goea_local.py \ + tests/test_goea_rpt_bonferroni.py \ + tests/test_goea_statsmodels.py \ + tests/test_gosearch_emptydict.py \ + tests/test_gosubdag_relationships.py \ + tests/test_grpr_get_sections_2d.py \ + tests/test_grprobj.py \ + tests/test_i92_relationship_parentchild.py \ + tests/test_i96_goea_ncbi.py \ + tests/test_mapslim.py \ + tests/test_multiple_testing.py \ + tests/test_ncbi_entrez_annotations.py \ + tests/test_optional_attributes.py \ + tests/test_parents_ancestors.py \ + tests/test_pvalcalc.py \ + tests/test_read_gaf_allow_nd.py \ + tests/test_rpt_gene2go_evidencecodes.py \ + tests/test_semantic_similarity.py \ + tests/test_sorter_desc2nts.py \ + tests/test_sorter_sections.py \ + tests/test_sorter.py \ + tests/test_study_zero.py \ + tests/test_wr_py_goea_results.py \ + tests/test_wr_sections_txt.py \ + tests/test_wr_tbl_subset.py \ + tests/test_write_hier.py \ + tests/test_write_summary_cnts.py # Run all tests. If you are submitting a pull request, all tests must pass. update: