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Update of changelog and version for release 20130713.

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taoliu committed Jul 19, 2013
1 parent 52dd523 commit 17b6139587bea8f3390334bbdea20d2e17519e6a
Showing with 21 additions and 2 deletions.
  1. +2 −0 .gitignore
  2. +17 −0 ChangeLog
  3. +1 −1 setup.py
  4. +1 −1 setup_w_cython.py
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@@ -27,3 +27,5 @@ MACS2/IO/numpy.pxd
MACS2/mnumpy.pxd
MACS2/numpy.pxd
+
+test/NOSPMR.ppois.bdg_ppois.bdg
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@@ -1,3 +1,20 @@
+2013-07-13 Tao Liu <vladimir.liu@gmail.com>
+ MACS version 2.0.10 20130713 (tag:alpha)
+
+ * fix bugs while output broadPeak and gappedPeak.
+
+ Note. Those weak broad regions without any strong enrichment
+ regions inside won't be saved in gappedPeak file.
+
+ * bdgcmp -T and -C are merged into -S and description is updated.
+
+ Now, you can use it to override SPMR values in your input for
+ bdgcmp. To use SPMR (from 'callpeak --SPMR -B') while calculating
+ statistics will cause weird results ( in most cases, lower
+ significancy), and won't be consistent with MACS2 callpeak
+ behavior. So if you have SPMR bedGraphs, input the smaller/larger
+ sample size in MILLION according to 'callpeak --to-large' option.
+
2013-07-10 Tao Liu <vladimir.liu@gmail.com>
MACS version 2.0.10 20130710 (tag:alpha)
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@@ -55,7 +55,7 @@ def main():
]
setup(name="MACS2",
- version="2.0.10.20130712",
+ version="2.0.10.20130713",
description="Model Based Analysis for ChIP-Seq data",
author='Tao Liu',
author_email='vladimir.liu@gmail.com',
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@@ -80,7 +80,7 @@ def main():
]
setup(name="MACS",
- version="2.0.10.20130712",
+ version="2.0.10.20130713",
description="Model Based Analysis for ChIP-Seq data",
author='Tao Liu',
author_email='vladimir.liu@gmail.com',

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