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Fix a description in bdgcmp command line.

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1 parent c48bf3a commit 2431f3ac8e93071f23552b4fe5d9b7642c77cd61 @taoliu committed Jun 6, 2012
Showing with 2 additions and 2 deletions.
  1. +2 −2 bin/macs2
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4 bin/macs2
@@ -1,5 +1,5 @@
#!/usr/bin/env python
-# Time-stamp: <2012-06-06 14:56:05 Tao Liu>
+# Time-stamp: <2012-06-06 15:41:18 Tao Liu>
"""Description: MACS 2 main executable
@@ -288,7 +288,7 @@ def add_bdgcmp_parser( subparsers ):
help = "The output bedGraph file to write scores. REQUIRED" )
argparser_bdgcmp.add_argument( "-m", "--method", dest = "method", type = str,
choices = ( "ppois", "qpois", "subtract", "logFE", "FE", "logLR" ),
- help = "Method to use while calculating a score in any bin by comparing treatment value and control value. Available choices are: ppois, qpois, subtract, logFE, and logLR,. They represent Poisson Pvalue (-log10(pvalue) form) using control as lambda and treatment as observation, q-value through a BH process for poisson pvalues, subtraction from treatment, linear scale fold enrichment, log10 fold enrichment, log10 likelihood between ChIP-enriched model and open chromatin model (with pseudocount +1). Default option is ppois.",default="ppois")
+ help = "Method to use while calculating a score in any bin by comparing treatment value and control value. Available choices are: ppois, qpois, subtract, logFE, and logLR,. They represent Poisson Pvalue (-log10(pvalue) form) using control as lambda and treatment as observation, q-value through a BH process for poisson pvalues, subtraction from treatment, linear scale fold enrichment, log10 fold enrichment, log10 likelihood between ChIP-enriched model and open chromatin model (with or without pseudocount). Default option is ppois.",default="ppois")
return
def add_randsample_parser( subparsers ):

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