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Add a new function to use tag distribution to determine peak summits
-- similar to SPP.
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taoliu committed Sep 14, 2012
1 parent d541fac commit 829cff2
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8 changes: 7 additions & 1 deletion ChangeLog
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2012-04-29 Benjamin Schiller <benjamin.schiller@ucsf.edu>, Tao Liu <taoliu@jimmy.harvard.edu>
2012-09-13 Benjamin Schiller <benjamin.schiller@ucsf.edu>, Tao Liu <taoliu@jimmy.harvard.edu>
MACS version 2.0.10 (tag:alpha not released)

* Introduced BAMPEParser *
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* Added --no-trackline *
By default, files have descriptive tracklines now

* new refinepeak command (experimental)
This new function will use a similar method in SPP (wtd), to
analyze raw tag distribution in peak region, then redefine the
peak summit where plus and minus tags are evenly distributed
around.

* Changes to output *
cPeakDetect.pyx has full support for new print/write methods and
--call-peaks, BAMPEParser, and use of paired-end data
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2 changes: 1 addition & 1 deletion MACS2/Constants.py
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MACS_VERSION = "2.0.10.20120703 (tag:beta)"
MACS_VERSION = "2.0.10.20120913 (tag:beta)"
#MACSDIFF_VERSION = "1.0.4 20110212 (tag:alpha)"
FILTERDUP_VERSION = "1.0.0 20120703"
RANDSAMPLE_VERSION = "1.0.0 20120703"
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