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restructured the atomic data section

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commit 8f0e14c1e073606f8d02af7f9b360ee0338fdb30 1 parent 43c6b28
@wkerzendorf wkerzendorf authored
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11 docs/atomic/atomic_data.rst
@@ -0,0 +1,11 @@
+.. _atomic-data-download:
+
+**********************
+Atomic Data for TARDIS
+**********************
+
+For a detailed description of the datasets go to :doc:`atomic_data_description`
+
+.. include:: current_public_table.rst
+
+
View
3  docs/atomic.rst → docs/atomic/atomic_data_description.rst
@@ -1,4 +1,5 @@
-.. _atomic-data_descritpion:
+.. _atomic-data-descritpion:
+
******************************
Atomic Data Format Description
******************************
View
63 docs/atomic/current_public_table.rst
@@ -0,0 +1,63 @@
++---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+
+| file name | uuid1 | data sources | macroatom | zeta | synpp references | database version |
+| | | | | | | |
++=================================================================================================================================+=================================================================================================================================+=================================================================================================================================+=================================================================================================================================+=================================================================================================================================+=================================================================================================================================+=================================================================================================================================+
+| `kurucz_cd23_full.zip <http://moria.astro.utoronto.ca/~wkerzend/tardis_atomic_databases/kurucz_cd23_full.zip>`_ | c94967bea3d411e3b1394437e69d75d7 | **kurucz:** | True | True | True | v0.9 |
+| | | | | | | |
+| | | H I-I, He I-II, Li I-II, Be I-IV | | | | |
+| | | C I-IV, N I-VI, O I-VI, F I-VI | | | | |
+| | | Ne I-VI, Na I-VI, Mg I-VI | | | | |
+| | | Al I-VI, Si I-VI, P I-VI, S I-VI | | | | |
+| | | Cl I-V, Ar I-V, K I-V, Ca I-IX | | | | |
+| | | Sc I-IX, Ti I-IX, V I-IX, Cr I-IX | | | | |
+| | | Mn I-IX, Fe I-IX, Co I-IX | | | | |
+| | | Ni I-IX, Cu I-II, Zn I-III | | | | |
+| | | | | | | |
+| | | | | | | |
+| | | **tardis_artificial_missing_ion:** | | | | |
+| | | | | | | |
+| | | Li III, B V, C V-VI, N VII, O VII-VIII | | | | |
+| | | F VII-IX, Ne VII-X, Na VII-XI | | | | |
+| | | Mg VII-XII, Al VII-XIII | | | | |
+| | | Si VII-XIV, P VII-XV, S VII-XVI | | | | |
+| | | Cl VI-XVII, Ar VI-XVIII | | | | |
+| | | K VI-XIX, Ca X-XX, Sc X-XXI | | | | |
+| | | Ti X-XXII, V X-XXIII, Cr X-XXIV | | | | |
+| | | Mn X-XXV, Fe X-XXVI, Co X-XXVII | | | | |
+| | | Ni X-XXVIII, Cu III-XXIX | | | | |
+| | | Zn IV-XXX | | | | |
+| | | | | | | |
+| | | | | | | |
+| | | | | | | |
++---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+
+| `kurucz_cd23_chianti_H_He.zip <http://moria.astro.utoronto.ca/~wkerzend/tardis_atomic_databases/kurucz_cd23_chianti_H_He.zip>`_ | e79f08c6a3d511e3bed14437e69d75d7 | **kurucz:** | True | True | True | v0.9 |
+| | | | | | | |
+| | | Li I-II, Be I-IV, C I-IV, N I-VI | | | | |
+| | | O I-VI, F I-VI, Ne I-VI, Na I-VI | | | | |
+| | | Mg I-VI, Al I-VI, Si I-VI | | | | |
+| | | P I-VI, S I-VI, Cl I-V, Ar I-V | | | | |
+| | | K I-V, Ca I-IX, Sc I-IX, Ti I-IX | | | | |
+| | | V I-IX, Cr I-IX, Mn I-IX, Fe I-IX | | | | |
+| | | Co I-IX, Ni I-IX, Cu I-II | | | | |
+| | | Zn I-III | | | | |
+| | | | | | | |
+| | | **chianti:** | | | | |
+| | | | | | | |
+| | | H I-I,He I-II | | | | |
+| | | | | | | |
+| | | **tardis_artificial_missing_ion:** | | | | |
+| | | | | | | |
+| | | Li III, B V, C V-VI, N VII, O VII-VIII | | | | |
+| | | F VII-IX, Ne VII-X, Na VII-XI | | | | |
+| | | Mg VII-XII, Al VII-XIII | | | | |
+| | | Si VII-XIV, P VII-XV, S VII-XVI | | | | |
+| | | Cl VI-XVII, Ar VI-XVIII | | | | |
+| | | K VI-XIX, Ca X-XX, Sc X-XXI | | | | |
+| | | Ti X-XXII, V X-XXIII, Cr X-XXIV | | | | |
+| | | Mn X-XXV, Fe X-XXVI, Co X-XXVII | | | | |
+| | | Ni X-XXVIII, Cu III-XXIX | | | | |
+| | | Zn IV-XXX | | | | |
+| | | | | | | |
+| | | | | | | |
+| | | | | | | |
++---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+
View
3  docs/index.rst
@@ -13,10 +13,9 @@ rapid spectral modelling of supernovae. The code is described in this documentat
installation
running
- gui
uses
examples/examples
- atomic_data
+ atomic/atomic_data
atomic
plasma
montecarlo
View
4 docs/running.rst
@@ -13,6 +13,7 @@ Simple Example
After installing TARDIS just download the example directory `<https://www.dropbox.com/s/svvyr5i7m8ouzdt/tardis_example.tar.gz>`_
and run TARDIS with:
+
.. code-block:: none
tar zxvf tardis_example.tar.gz
@@ -31,6 +32,9 @@ Then plot the output_spectrum.dat with your favourite plotting program. Here's a
plot(tardis_spec[:,0], tardis_spec[:,1])
+More atomic datasets can be downloaded from :ref:`atomic-data-download`.
+
+
Scripting TARDIS
================
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