Bioinformatics plugin for Taverna
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taverna-biomart-activity-ui
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README.md

Bioinformatics plugins for Apache Taverna

Plugins for Taverna for supporting bioinformatics-specific services.

This plugin is no longer maintained by the Apache Taverna project, but has been made available to taverna-extras for archival purposes, open for third-party contributions.

This module may rely on Apache Taverna modules from Maven Central as well as the older Taverna 2 modules from http://www.mygrid.org.uk/maven/repository - do note that Taverna 2 was licensed as LGPL 2.1 or later.

Note: This plugins have not been updated for Apache Taverna 3

License

(c) 2007-2014 University of Manchester

(c) 2014-2018 Apache Software Foundation

This product includes software developed at The Apache Software Foundation.

Licensed under the Apache License 2.0, see the file LICENSE for details.

The file NOTICE contain any additional attributions and details about embedded third-party libraries and source code.

Contribute

This plugin is not actively maintained, but feel free to raise a GitHub pull request.

Any contributions received are assumed to be covered by the Apache License 2.0.

Prerequisites

  • Java 1.7 or newer (tested with OpenJDK 1.8)
  • Apache Maven 3.2.5 or newer (older versions probably also work)

Building

To build, use

mvn clean install

This will build each module and run their tests.

Skipping tests

To skip the tests (these can be timeconsuming), use:

mvn clean install -DskipTests

If you are modifying this source code independent of the Apache Taverna project, you may not want to run the Rat Maven plugin that enforces Apache headers in every source file - to disable it, try:

mvn clean install -Drat.skip=true