A spiking neural integrator model of the adaptive control of action by the anterior cingulate cortex

This repository contains the materials used to generate and analyze data and the source of the paper submission titled "A spiking neural integrator model of the adaptive control of action by the anterior cingulate cortex".

Some information about how the code in this repository is organized can be found at this repository (or see the generated slides).

The code in this repository is licensed under the MIT license. Please use it and share your changes!

run.py usage

download_data - Downloads data from figshare convert - Convert any CSVs in data/ to HDF5 plot - Run all plotting scripts combine - Combine plots into figures (dint|ctrl|all) - Analyze all data files, or just dint/ctrl paper - Run pdflatex and bibtex to generate paper

Requirements

The following are used by code in this repository. You might be able to get away without some of these.

• python 2 (used 2.7, but earlier versions might work)
• pip
• LaTeX (texlive recommended)
• Inkscape (for converting to PDF)

Python requirements can be install with pip install requirements.txt

Everything is in PyPI, except for python-neo, which was customized and is available in this repository. The customizations made will either be refactored out, or made into a pull request to the main python-neo repository soon.