Merge pull request sanger-pathogens#205 from satta/gff3export_fixes

do not always strip 'term=' from product
tcarver · Jul 9, 2014 · 4a9303b · 4a9303b
2 parents 82c78ac + aed0b31
commit 4a9303b
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Showing 2 changed files with 3 additions and 11 deletions.
diff --git a/etc/versions b/etc/versions
@@ -1,4 +1,4 @@
-Artemis Release 16.0.12
-ACT Release 13.0.12
+Artemis Release 16.0.13
+ACT Release 13.0.13
 DNAPlotter Release 1.11
 BamView 1.2.13
diff --git a/uk/ac/sanger/artemis/io/GFFStreamFeature.java b/uk/ac/sanger/artemis/io/GFFStreamFeature.java
@@ -776,15 +776,7 @@ public String process(StringVector values) {
         StringBuilder buffer = new StringBuilder();
         if (values != null && values.size() > 0) {
           for (int value_index = 0; value_index < values.size(); ++value_index) {
-            final String this_value;
-            int index = values.elementAt(value_index).indexOf("term=");
-            // strip off the 'term=' etc
-            if (index > -1)
-              this_value = GFF3Encoder.encode(values.elementAt(value_index)
-                  .substring(index + 5,
-                      values.elementAt(value_index).length() - 1));
-            else
-              this_value = GFF3Encoder.encode(values.elementAt(value_index));
+            String this_value = GFF3Encoder.encode(values.elementAt(value_index));
             if (value_index > 0 && value_index < (values.size())) {
               buffer.append(",");
             }