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Adding all UBIF files from rs.tdwg.org apache server docs
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@mdoering
mdoering committed Apr 11, 2016
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Binary file added 2005/Schema/1.0/EncodedFormattingProposal.zip
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159 changes: 159 additions & 0 deletions 2005/Schema/1.0/SDD.xsd
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<?xml version="1.0" encoding="iso-8859-1"?>
<!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by Gregor Hagedorn (Biologische Bundesanstalt) -->
<xs:schema xmlns="http://www.tdwg.org/2005/UBIF" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:html="http://www.w3.org/1999/xhtml" xmlns:sea="http://www.bgbm.org/biodivinf/Schema/sea" targetNamespace="http://www.tdwg.org/2005/UBIF" elementFormDefault="qualified" attributeFormDefault="unqualified" blockDefault="#all" version="Unified Biosciences Information Framework (UBIF) 1.0 and SDD 1.0">
<xs:annotation>
<xs:documentation xml:lang="en-us">This is the schema file to be referenced in instance documents for validation. It is the top level schema file that integrates the schema components.</xs:documentation>
</xs:annotation>
<xs:annotation>
<xs:documentation xml:lang="en-us">This version integrates UBIF and SDD. To add further object types, this file has to be changed. See UBIF.xsd for UBIF and SDD_Types.xsd for SDD copyright annotation!</xs:documentation>
</xs:annotation>
<xs:annotation>
<xs:documentation xml:lang="en-us">Copyright © 2005 TDWG (Taxonomic Databases Working Group, www. tdwg.org). See the file SDD_(c).xsd for authorship and licensing information.</xs:documentation>
</xs:annotation>
<xs:include schemaLocation="UBIF_Metadata.xsd"/>
<xs:include schemaLocation="UBIF_ObjectCoreOntology.xsd"/>
<xs:include schemaLocation="SDD_TypeLib.xsd"/>
<xs:annotation>
<xs:documentation xml:lang="en-us">! Use Datasets (not Dataset below) as root element in UBIF instance documents! Datasets is a collection containing 1..n Dataset elements; the element is defined in the indirectly included file UBIF_RootIdentityConstraints.xsd. The Dataset element defined below should not be used as root element - in the majority of cases this is in fact impossible because of identity constraints depending on the Datasets root.</xs:documentation>
</xs:annotation>
<xs:element name="Dataset">
<xs:annotation>
<xs:documentation>Data from one or several object types, with common technical and content metadata.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="TechnicalMetadata" type="TechnicalMetadata">
<xs:annotation>
<xs:documentation xml:lang="en-us">Metadata describing provider and process that created the current xml document. The provider is not necessarily the creator or owner of the dataset, compare content Metadata.</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="Metadata" type="ContentMetadata">
<xs:annotation>
<xs:documentation xml:lang="en-us">Metadata referring to the principal source of the entire data collection
(the metadata scope may be
wider than the objects actually
contained in the data set).</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="TaxonNames" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">Taxon names used in the data set. Each object contains a name - either locally defined or representing an external resource defined in a linking mechanism and defines a local id attribute that may be referred to multiple times from within the data set.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="TaxonName" type="TaxonName" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation xml:lang="en-us">Biology: Object in a nomenclator</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="TaxonHierarchies" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">Optional hierarchy (= tree, biology: taxonomy) of taxon classes defined above. A hierarchy may be incomplete, i. e. some TaxonName object may not be in the hierarchy. TaxonHierarchies may be locally defined or represent an external source.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="TaxonHierarchy" type="TaxonHierarchy" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation xml:lang="en-us">Biology: Taxonomic hierarchy, or arbitrary set of taxa.</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Specimens" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">Specimens (including ABCD.Units) are physical objects that have been collected or observed.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="Specimen" type="Specimen" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation xml:lang="en-us">Objects being observed or in a collection.
Specimens may be identified or
assigned to a taxon name as types.</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:group ref="SDD"/>
<xs:element name="Agents" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">Documentation of persons/organizations involved in the authoring, compiling, editing, etc. of the data set.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="Agent" type="Agent" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation xml:lang="en-us">@@ The specific elements are only a preliminary sketch, this needs synchronization with TDWG ABCD!</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Publications" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">Publications used in the data set, defined through objects (= local or external link, see under Agents).</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="Publication" type="Publication" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation xml:lang="en-us">Printed or digital publication
(including database source)</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Geography" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">Geographical locations (often country names, but potentially on any level), defined through objects (= local or external link, see under Agents). An example of an external gazetteer referred to is the TDWG Geography standard.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="GeoLocality" type="GeoLocality" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="MediaResources" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">Resource definitions containing links like URLs or actually embedding the resource (e. g. encoded images).</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="MediaResource" type="MediaResource" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Audiences" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">An Audience is an extension of language (including dialect), with expertise (pupil, beginner, expert) and other parameters (olicy makers, farmers, etc.)</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="Audience" type="AudienceCore"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Other" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">Collection for an object type not yet defined in the types above</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:any namespace="##any" processContents="strict" minOccurs="0">
<xs:annotation>
<xs:documentation xml:lang="en-us">@@@ The 'payload' of the dataset exchanged using UBIF. At this point a new namespace is defined (and usually the default namespace is redefined). Note that if an xsi:schemaLocation is desired, it may not be defined here but must be added to an xsi:schemaLocation attribute in the Datasets root element.</xs:documentation>
</xs:annotation>
</xs:any>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:schema>
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16 changes: 16 additions & 0 deletions 2005/Schema/1.0/SDD_(c).xsd
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<?xml version="1.0" encoding="iso-8859-1"?>
<!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by Gregor Hagedorn (Biologische Bundesanstalt) -->
<xs:schema xmlns="http://www.tdwg.org/2005/UBIF" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:html="http://www.w3.org/1999/xhtml" targetNamespace="http://www.tdwg.org/2005/UBIF" elementFormDefault="qualified" attributeFormDefault="unqualified" blockDefault="#all" version="SDD 1">
<xs:annotation>
<xs:documentation xml:lang="en-us">
<html:p>The SDD (Structured Descriptive Data) xml schema defines a method to encode descriptive data in biology and other subjects. The primary goal of the design is to increase the knowledge and availability of knowledge about the diversity of life on earth. However, it may be used in many other areas (including medicine, pathology, archeology, anthropology) wherever objects or classes of objects are described for later reidentification. It is hoped that this standard will reach general acceptance to become a successor to existing standards like DELTA or NEXUS.</html:p>
<html:p>The schema was designed by the Structure of Descriptive Data (SDD, http://www.diversitycampus.net/Projects/TDWG-SDD/index.html) group. SDD was established 1999 as a subgroup of the Taxonomic Databases Working Group (TDWG, www. tdwg.org) of the International Union of Biological Sciences (IUBS). The requirements for an SDD schema where elaborated in 9 major meetings of the SDD group and in discussions over the SDD email list. Over 60 people contributed to these discussions. However, the help, criticism and energy of Bob Morris, Kevin Thiele, Bryan Heidorn, Jacob Asiedu, Guillaume Rousse, Steve Shattuck, Donald Hobern, Trevor Patterson and Nicolas Bailly is specially acknowledged! The author of the current schema version and of all annotations is G. Hagedorn, Berlin.</html:p>
<html:p>Copyright © TDWG (Taxonomic Databases Working Group, www. tdwg.org), 15. September 2005. Final versions are licensed under the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version (http://www.gnu.org/licenses/gpl.html). Schema versions containing a "beta" as part of the xs:schema/@xs:version attribute are licensed only with the following restriction: "Permission to use this schema is granted to all scientific or commercial projects for a testing period of up to 3 years. After this time computer programs using this schema must either be discontinued or converted to the final version of this schema."</html:p>
<html:p>Conventions: In the development versions, element, attribute, or type names starting with underscores (__) are present for discussion purposes only and should be only experimentally used. In the final draft of the production versions, these elements will be removed, but beta versions of production versions may still contain names starting with underscores. Annotations containing @@ indicate unfinished points of discussion.</html:p>
<html:p>Note: blockDefault="#all" in xs:schema prevents substitution and that in instance documents derived types can be used in elements typed to the base type (which otherwise is possible using xsi:type=""). - finalDefault is not set, further type derivation is currently not considered problematic. Please contact us if you believe otherwise. Note that according to the w3c discussion forum, the developers of xml Schema consider to drop the final attribute in the upcoming XML Schema version 1.1. - Nillable: xsi:null is not supported in SDD documents (schema declaration nillable="false" is default, not explicitly stated).</html:p>
</xs:documentation>
</xs:annotation>
<xs:annotation>
<xs:documentation xml:lang="en-us">(This file contains only the narrative explaining SDD, UBIF and copyright information. To use UBIF or SDD, an integrator file is needed, for example, for UBIF+SDD this file is SDD.xsd.)</xs:documentation>
</xs:annotation>
</xs:schema>

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