From 974cfa5b6bded743cd4f05f6fd0bfa1f664df2b3 Mon Sep 17 00:00:00 2001
From: "Christopher J. Markiewicz" <markiewicz@stanford.edu>
Date: Mon, 11 Aug 2025 14:21:06 -0400
Subject: [PATCH 1/3] chore: Drop Python 3.8 support, test on 3.13

---
 .circleci/config.yml                | 6 +++---
 .github/workflows/pythonpackage.yml | 2 +-
 pyproject.toml                      | 4 ++--
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/.circleci/config.yml b/.circleci/config.yml
index c0c3f174..7740f589 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -8,7 +8,7 @@ jobs:
   build:
     executor:
       name: python/default
-      tag: '3.12'
+      tag: '3.13'
 
     # docker:
     #   - auth:
@@ -38,7 +38,7 @@ jobs:
   deploy_pypi:
     executor:
       name: python/default
-      tag: '3.12'
+      tag: '3.13'
 
     # docker:
     #   - auth:
@@ -60,7 +60,7 @@ jobs:
   tests:
     executor:
       name: python/default
-      tag: '3.12'
+      tag: '3.13'
 
     # docker:
     #   - auth:
diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index b988f68f..06a143a8 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -63,7 +63,7 @@ jobs:
     needs: build
     strategy:
       matrix:
-        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
         mode: ['wheel']
         include:
           - {python-version: '3.11', mode: 'repo'}
diff --git a/pyproject.toml b/pyproject.toml
index 51e999f9..b2eb8f3e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -12,14 +12,14 @@ classifiers = [
     "Intended Audience :: Science/Research",
     "Topic :: Scientific/Engineering :: Image Recognition",
     "License :: OSI Approved :: Apache Software License",
-    "Programming Language :: Python :: 3.8",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
 ]
 license = {file = "LICENSE"}
-requires-python = ">=3.8"
+requires-python = ">=3.9"
 dependencies = [
     "pybids >= 0.15.2",
     "importlib_resources >= 5.7; python_version < '3.11'",

From 341eff1200b1ac33ff5ffef4d55047855e3178ed Mon Sep 17 00:00:00 2001
From: "Christopher J. Markiewicz" <markiewicz@stanford.edu>
Date: Mon, 11 Aug 2025 14:21:24 -0400
Subject: [PATCH 2/3] chore: Do not cap datalad version

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index b2eb8f3e..59f87c39 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -45,7 +45,7 @@ test = [
     "toml",
 ]
 datalad = [
-    "datalad ~= 1.0.0"
+    "datalad >= 1.0.0"
 ]
 doc = [
     "nbsphinx",

From f5ffabadcadc51998e5945b9a0879100e56d83bf Mon Sep 17 00:00:00 2001
From: "Christopher J. Markiewicz" <markiewicz@stanford.edu>
Date: Mon, 11 Aug 2025 14:25:03 -0400
Subject: [PATCH 3/3] chore(ci): Install git-annex from PyPI

---
 .circleci/config.yml | 22 ++--------------------
 1 file changed, 2 insertions(+), 20 deletions(-)

diff --git a/.circleci/config.yml b/.circleci/config.yml
index 7740f589..cd1217da 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -70,37 +70,19 @@ jobs:
     environment:
       - OSF_MIRROR_PATH: /tmp/data/templateflow
     steps:
-      - restore_cache:
-          keys:
-            - annex-v1-{{ epoch }}
-            - annex-v1-
       - run:
-          name: Install git and git-annex
+          name: Configure git
           command: |
-            if [[ ! -e "/tmp/cache/git-annex-standalone.tar.gz" ]]; then
-              wget -O- http://neuro.debian.net/lists/focal.us-ca.full | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list
-              sudo apt-key add .neurodebian/neurodebian.gpg
-              sudo apt-key adv --recv-keys --keyserver hkps://keys.openpgp.org 0xA5D32F012649A5A9 || true
-              sudo apt update && sudo apt-get install -y --no-install-recommends git-annex-standalone
-              mkdir -p /tmp/cache
-              tar czvf /tmp/cache/git-annex-standalone.tar.gz /usr/bin/git-annex /usr/bin/git-annex-shell /usr/lib/git-annex.linux
-            else
-              sudo tar xzfv /tmp/cache/git-annex-standalone.tar.gz -C /
-            fi
             git config --global user.name "First Last"
             git config --global user.email "email@domain.com"
 
-      - save_cache:
-          key: annex-v1-{{ epoch }}
-          paths:
-            - "/tmp/cache"
-
       - attach_workspace:
           at: ~/project
 
       - run:
           command: |
             python .maint/update_requirements.py
+            echo git-annex >> dev-requirements.txt
           name: Generate requirements.txt
 
       - python/install-packages: