From eaf41a9bfd9c3da45ee273944a9eb0d2bade069e Mon Sep 17 00:00:00 2001
From: Chris Markiewicz <markiewicz@stanford.edu>
Date: Mon, 6 Jul 2020 14:24:10 -0400
Subject: [PATCH 1/2] FIX: Include leading dots in extensions

---
 templateflow/conf/config.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/templateflow/conf/config.json b/templateflow/conf/config.json
index f613c2f5..506bbecc 100644
--- a/templateflow/conf/config.json
+++ b/templateflow/conf/config.json
@@ -68,7 +68,7 @@
         },
         {
             "name": "extension",
-            "pattern": "[._]*[a-zA-Z0-9]*?\\.([^/\\\\]+)$"
+            "pattern": "[._]*[a-zA-Z0-9]*?(\\.[^/\\\\]+)$"
         }
     ],
     "default_path_patterns": [

From 69187c64d5928b9445e6c201edd446a2db5f6198 Mon Sep 17 00:00:00 2001
From: Chris Markiewicz <markiewicz@stanford.edu>
Date: Mon, 6 Jul 2020 16:21:37 -0400
Subject: [PATCH 2/2] PIN: pybids >= 0.11.1

---
 docs/requirements.txt | 4 ++--
 requirements.txt      | 4 ++--
 setup.cfg             | 2 +-
 3 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index e5eb91f8..14b25b37 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -2,7 +2,7 @@ git+https://github.com/AleksandarPetrov/napoleon.git@0dc3f28a309ad602be5f44a9049
 git+https://github.com/rwblair/sphinxcontrib-versioning.git@39b40b0b84bf872fc398feff05344051bbce0f63#egg=sphinxcontrib-versioning
 nbsphinx
 packaging
-pybids>=0.9.2
+pybids>=0.11.1
 pydot>=1.2.3
 pydotplus
 requests
@@ -10,4 +10,4 @@ sphinx-argparse
 sphinx>=2.1.2
 sphinx_rtd_theme
 sphinxcontrib-apidoc ~= 0.3.0
-tqdm
\ No newline at end of file
+tqdm
diff --git a/requirements.txt b/requirements.txt
index 7c04adc9..02009c50 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,7 +1,7 @@
-pybids~=0.9.2
+pybids~=0.11.1
 requests
 tqdm
 pytest
 pytest-xdist
 pytest-cov==2.5.1
-coverage
\ No newline at end of file
+coverage
diff --git a/setup.cfg b/setup.cfg
index 0b922228..16b5cc95 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -24,7 +24,7 @@ project_urls =
 [options]
 python_requires = >= 3.6
 install_requires =
-    pybids >= 0.9.2
+    pybids >= 0.11.1
     requests
     tqdm
 test_requires =