diff --git a/LICENSE b/LICENSE index 1314424a..1a031b88 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ MIT License -Copyright (c) 2020 Grigory Malivenko +Copyright (c) 2020 TensorLeap Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/MANIFEST.in b/MANIFEST.in deleted file mode 100644 index 03852067..00000000 --- a/MANIFEST.in +++ /dev/null @@ -1,3 +0,0 @@ -include LICENSE -include README.md -include requirements.txt \ No newline at end of file diff --git a/Makefile b/Makefile new file mode 100644 index 00000000..5707814d --- /dev/null +++ b/Makefile @@ -0,0 +1,31 @@ +PYTHONPATH := . +POETRY_MODULE := poetry run python -m +PYTEST := $(POETRY_MODULE) pytest + +.PHONY: run_tests +run_tests: + $(PYTEST) test -v + +.PHONY: test_models +test_models: + $(PYTEST) test/models -v + +.PHONY: watch +watch: + $(POETRY_MODULE) pytest_watch --runner "python -m pytest -v -k $(K)" + +.PHONY: lint +lint: + $(POETRY_MODULE) mypy --install-types --non-interactive . + +.PHONY: lint_strict_code +lint_strict_code: + $(POETRY_MODULE) mypy --install-types --non-interactive --strict code_loader + +.PHONY: lint_tests +lint_tests: + $(POETRY_MODULE) mypy --install-types --non-interactive tests + +.PHONY: test_with_coverage +test_with_coverage: + $(PYTEST) --cov=code_loader --cov-branch --no-cov-on-fail --cov-report term-missing --cov-report html -v tests/ diff --git a/onnx2kerastl/activation_layers.py b/onnx2kerastl/activation_layers.py index 55be903b..9f76850b 100644 --- a/onnx2kerastl/activation_layers.py +++ b/onnx2kerastl/activation_layers.py @@ -1,5 +1,7 @@ from tensorflow import keras import logging + +from .customonnxlayer.onnxhardsigmoid import OnnxHardSigmoid from .utils import ensure_tf_type, ensure_numpy_type @@ -176,3 +178,25 @@ def convert_prelu(node, params, layers, lambda_func, node_name, keras_name): prelu = keras.layers.PReLU(weights=[W], shared_axes=shared_axes, name=keras_name) layers[node_name] = prelu(input_0) + + +def convert_hard_sigmoid(node, params, layers, lambda_func, node_name, keras_name): + """ + Convert Hard Sigmoid activation layer + :param node: current operation node + :param params: operation attributes + :param layers: available keras layers + :param lambda_func: function for keras Lambda layer + :param node_name: internal converter name + :param keras_name: resulting layer name + :return: None + """ + if len(node.input) != 1: + assert AttributeError('More than 1 input for an activation layer.') + + input_0 = ensure_tf_type(layers[node.input[0]], name="%s_const" % keras_name) + + alpha = params.get("alpha", 0.2) + beta = params.get("beta", 0.5) + onnx_hard_sigmoid = OnnxHardSigmoid(alpha=alpha, beta=beta, name=keras_name) + layers[node_name] = onnx_hard_sigmoid(input_0) diff --git a/onnx2kerastl/converter.py b/onnx2kerastl/converter.py index 593ac227..81506987 100644 --- a/onnx2kerastl/converter.py +++ b/onnx2kerastl/converter.py @@ -8,6 +8,7 @@ import collections from onnx import numpy_helper +from .customonnxlayer import onnx_custom_objects_map from .layers import AVAILABLE_CONVERTERS @@ -290,7 +291,7 @@ def onnx_to_keras(onnx_model, input_names, layer['config']['function'] = tuple(kerasf) keras.backend.set_image_data_format('channels_last') - model_tf_ordering = keras.models.Model.from_config(conf) + model_tf_ordering = keras.models.Model.from_config(conf, custom_objects=onnx_custom_objects_map) for dst_layer, src_layer, conf in zip(model_tf_ordering.layers, model.layers, conf['layers']): W = src_layer.get_weights() diff --git a/onnx2kerastl/customonnxlayer/__init__.py b/onnx2kerastl/customonnxlayer/__init__.py new file mode 100644 index 00000000..be07b10d --- /dev/null +++ b/onnx2kerastl/customonnxlayer/__init__.py @@ -0,0 +1,3 @@ +from onnx2kerastl.customonnxlayer.onnxhardsigmoid import OnnxHardSigmoid + +onnx_custom_objects_map = {"OnnxHardSigmoid": OnnxHardSigmoid} diff --git a/onnx2kerastl/customonnxlayer/onnxhardsigmoid.py b/onnx2kerastl/customonnxlayer/onnxhardsigmoid.py new file mode 100644 index 00000000..67440cf8 --- /dev/null +++ b/onnx2kerastl/customonnxlayer/onnxhardsigmoid.py @@ -0,0 +1,23 @@ +from keras.layers import Layer +import tensorflow as tf + + +class OnnxHardSigmoid(Layer): + def __init__(self, alpha: float = 0.2, beta: float = 0.5, **kwargs): + super().__init__(**kwargs) + self.alpha = alpha + self.beta = beta + + def call(self, inputs, **kwargs): + x = tf.multiply(inputs, self.alpha) + x = tf.add(x, self.beta) + x = tf.clip_by_value(x, 0., 1.) + return x + + def get_config(self): + config = super().get_config() + config.update({ + "alpha": self.alpha, + "beta": self.beta, + }) + return config diff --git a/onnx2kerastl/layers.py b/onnx2kerastl/layers.py index 336e8255..c9f84c4c 100644 --- a/onnx2kerastl/layers.py +++ b/onnx2kerastl/layers.py @@ -1,6 +1,6 @@ from .convolution_layers import convert_conv, convert_convtranspose from .activation_layers import convert_relu, convert_elu, convert_lrelu, convert_selu, \ - convert_sigmoid, convert_tanh, convert_softmax, convert_prelu + convert_sigmoid, convert_tanh, convert_softmax, convert_prelu, convert_hard_sigmoid from .operation_layers import convert_clip, convert_exp, convert_reduce_sum, convert_reduce_mean, \ convert_log, convert_pow, convert_sqrt, convert_split, convert_cast, convert_floor, convert_identity, \ convert_argmax, convert_reduce_l2, convert_reduce_max @@ -22,6 +22,7 @@ 'Elu': convert_elu, 'LeakyRelu': convert_lrelu, 'Sigmoid': convert_sigmoid, + 'HardSigmoid': convert_hard_sigmoid, 'Tanh': convert_tanh, 'Selu': convert_selu, 'Clip': convert_clip, diff --git a/onnx2kerastl/upsampling_layers.py b/onnx2kerastl/upsampling_layers.py index 586e9405..f0bc2ac1 100644 --- a/onnx2kerastl/upsampling_layers.py +++ b/onnx2kerastl/upsampling_layers.py @@ -27,12 +27,17 @@ def convert_upsample(node, params, layers, lambda_func, node_name, keras_name): # Upsample since opset version 9 uses input[1] as 'scales' instead of attributes. scale = np.uint8(layers[node.input[1]][-2:]) - if params['mode'].decode('utf-8') != 'nearest': - logger.error('Cannot convert non-nearest upsampling.') - raise AssertionError('Cannot convert non-nearest upsampling') + interpolation_mode = params['mode'].decode('utf-8') + if interpolation_mode == 'nearest': + interpolation = "nearest" + elif interpolation_mode in ['bilinear', 'linear']: + interpolation = "bilinear" + elif interpolation_mode in "cubic": + interpolation = "bicubic" + else: + logger.error(f'Cannot convert upsampling. interpolation mode: {interpolation_mode} is not supported') + raise AssertionError(f'Cannot convert upsampling. interpolation mode: {interpolation_mode} is not supported') - upsampling = keras.layers.UpSampling2D( - size=scale, name=keras_name - ) + upsampling = keras.layers.UpSampling2D(size=scale, name=keras_name, interpolation=interpolation) layers[node_name] = upsampling(layers[node.input[0]]) diff --git a/onnx2kerastl/utils.py b/onnx2kerastl/utils.py index bc4dca2b..6d0dcd94 100644 --- a/onnx2kerastl/utils.py +++ b/onnx2kerastl/utils.py @@ -1,5 +1,6 @@ import numpy as np from tensorflow import keras +from keras_data_format_converter import convert_channels_first_to_last def is_numpy(obj): @@ -47,7 +48,8 @@ def target_layer(_, inp=obj, dtype=obj.dtype.name): return obj -def check_torch_keras_error(model, k_model, input_np, epsilon=1e-5, change_ordering=False): +def check_torch_keras_error(model, k_model, input_np, epsilon=1e-5, change_ordering=False, + should_transform_inputs=False): """ Check difference between Torch and Keras models :param model: torch model @@ -55,23 +57,24 @@ def check_torch_keras_error(model, k_model, input_np, epsilon=1e-5, change_order :param input_np: input data as numpy array or list of numpy array :param epsilon: allowed difference :param change_ordering: change ordering for keras input + :param should_transform_inputs: default False, set to True for converting channel first inputs to channel last format :return: actual difference + """ from torch.autograd import Variable import torch - initial_keras_image_format = keras.backend.image_data_format() - if isinstance(input_np, np.ndarray): input_np = [input_np.astype(np.float32)] - input_var = [Variable(torch.FloatTensor(i)) for i in input_np] pytorch_output = model(*input_var) - if not isinstance(pytorch_output, tuple): - pytorch_output = [pytorch_output.data.numpy()] - else: + if isinstance(pytorch_output, dict): + pytorch_output = [p.data.numpy() for p in list(pytorch_output.values())] + elif isinstance(pytorch_output, (tuple, list)): pytorch_output = [p.data.numpy() for p in pytorch_output] + else: + pytorch_output = [pytorch_output.data.numpy()] if change_ordering: # change image data format @@ -101,13 +104,31 @@ def check_torch_keras_error(model, k_model, input_np, epsilon=1e-5, change_order _koutput.append(k) keras_output = _koutput else: - keras.backend.set_image_data_format("channels_first") - keras_output = k_model.predict(input_np) + inputs_to_transpose = [] + if should_transform_inputs: + inputs_to_transpose = [k_input.name for k_input in k_model.inputs] + + _input_np = [] + for i in input_np: + axes = list(range(len(i.shape))) + axes = axes[0:1] + axes[2:] + axes[1:2] + _input_np.append(np.transpose(i, axes)) + input_np = _input_np + + k_model = convert_channels_first_to_last(k_model, inputs_to_transpose) + keras_output = k_model(*input_np) if not isinstance(keras_output, list): keras_output = [keras_output] - # reset to previous image_data_format - keras.backend.set_image_data_format(initial_keras_image_format) + _koutput = [] + for i, k in enumerate(keras_output): + if k.shape != pytorch_output[i].shape: + axes = list(range(len(k.shape))) + axes = axes[0:1] + axes[-1:] + axes[1:-1] + k = np.transpose(k, axes) + _koutput.append(k) + keras_output = _koutput + max_error = 0 for p, k in zip(pytorch_output, keras_output): diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 00000000..c1150b1f --- /dev/null +++ b/poetry.lock @@ -0,0 +1,1233 @@ +[[package]] +name = "absl-py" +version = "1.0.0" +description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +six = "*" + +[[package]] +name = "astunparse" +version = "1.6.3" +description = "An AST unparser for Python" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +six = ">=1.6.1,<2.0" + +[[package]] +name = "atomicwrites" +version = "1.4.0" +description = "Atomic file writes." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[[package]] +name = "attrs" +version = "21.4.0" +description = "Classes Without Boilerplate" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[package.extras] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] +docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] + +[[package]] +name = "cachetools" +version = "5.1.0" +description = "Extensible memoizing collections and decorators" +category = "main" +optional = false +python-versions = "~=3.7" + +[[package]] +name = "certifi" +version = "2022.5.18" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" +optional = false +python-versions = ">=3.5" + +[[package]] +name = "charset-normalizer" +version = "2.0.12" +description = "The Real First Universal Charset Detector. 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"^1.11.0" +keras-data-format-converter = "^0.0.8" + +[tool.poetry.dev-dependencies] +pytest = "^7.1.2" +torch = "^1.11.0" +torchvision = "^0.12.0" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index fdd09dae..00000000 --- a/requirements.txt +++ /dev/null @@ -1,4 +0,0 @@ -tensorflow -tensorflow-addons -numpy -onnx \ No newline at end of file diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index 9d5f7979..00000000 --- a/setup.cfg +++ /dev/null @@ -1,3 +0,0 @@ -# Inside of setup.cfg -[metadata] -description-file = README.md \ No newline at end of file diff --git a/setup.py b/setup.py deleted file mode 100644 index fd5d817a..00000000 --- a/setup.py +++ /dev/null @@ -1,36 +0,0 @@ -from setuptools import setup, find_packages - - -def parse_requirements(filename): - """ load requirements from a pip requirements file """ - lineiter = (line.strip() for line in open(filename)) - return [line for line in lineiter if line and not line.startswith("#")] - - -reqs = parse_requirements('requirements.txt') - -with open('README.md') as f: - long_description = f.read() - -setup(name='onnx2kerastl', - version='0.0.32', - description='The deep learning models converter', - long_description=long_description, - long_description_content_type='text/markdown', - url='https://github.com/tensorleap/onnx2keras', - author='Grigory Malivenko, Doron Har Noy', - author_email='nerox8664@gmail.com, doron.harnoy@tensorleap.ai', - classifiers=[ - 'Development Status :: 3 - Alpha', - 'Intended Audience :: Science/Research', - 'License :: OSI Approved :: MIT License', - 'Operating System :: OS Independent', - 'Programming Language :: Python', - 'Topic :: Scientific/Engineering :: Image Recognition', - ], - keywords='machine-learning deep-learning pytorch keras neuralnetwork vgg resnet ' - 'densenet drn dpn darknet squeezenet mobilenet onnx tensorleap', - license='MIT', - packages=find_packages(), - install_requires=reqs, - zip_safe=False) diff --git a/test/layers/activations/test_hard_sigmoid.py b/test/layers/activations/test_hard_sigmoid.py new file mode 100644 index 00000000..2a04891f --- /dev/null +++ b/test/layers/activations/test_hard_sigmoid.py @@ -0,0 +1,46 @@ +import torch.nn as nn +import numpy as np +import pytest + +from test.utils import convert_and_test + + +class LayerHardSigmoid(nn.Module): + """ + Test for nn.layers based types + """ + def __init__(self): + super(LayerHardSigmoid, self).__init__() + self.hard_sig = nn.Hardsigmoid() + + def forward(self, x): + x = self.hard_sig(x) + return x + + +class FHardSigmoid(nn.Module): + """ + Test for nn.functional types + """ + def __init__(self): + super(FHardSigmoid, self).__init__() + + def forward(self, x): + from torch.nn import functional as F + return F.hardsigmoid(x) + + +@pytest.mark.parametrize('change_ordering', [True, False]) +def test_layer_sigmoid(change_ordering): + model = LayerHardSigmoid() + model.eval() + input_np = np.random.uniform(0, 1, (1, 3, 224, 224)) + error = convert_and_test(model, input_np, verbose=False, change_ordering=change_ordering) + + +@pytest.mark.parametrize('change_ordering', [True, False]) +def test_f_hard_sigmoid(change_ordering): + model = FHardSigmoid() + model.eval() + input_np = np.random.uniform(0, 1, (1, 3, 224, 224)) + error = convert_and_test(model, input_np, verbose=False, change_ordering=change_ordering) \ No newline at end of file diff --git a/test/models/test_deeplab.py b/test/models/test_deeplab.py new file mode 100644 index 00000000..b95ac5eb --- /dev/null +++ b/test/models/test_deeplab.py @@ -0,0 +1,17 @@ +import numpy as np +import pytest +from torchvision.models.segmentation import deeplabv3_resnet50, deeplabv3_resnet101, deeplabv3_mobilenet_v3_large + +from test.utils import convert_and_test + + +@pytest.mark.slow +@pytest.mark.parametrize('change_ordering', [False]) +@pytest.mark.parametrize('model_class', [deeplabv3_resnet50, deeplabv3_resnet101, deeplabv3_mobilenet_v3_large]) +def test_deeplab(change_ordering, model_class): + model = model_class() + model.eval() + + input_np = np.random.uniform(0, 1, (1, 3, 256, 256)) + error = convert_and_test(model, input_np, verbose=False, change_ordering=change_ordering, + should_transform_inputs=True) diff --git a/test/utils.py b/test/utils.py index f52a54e9..33f62977 100644 --- a/test/utils.py +++ b/test/utils.py @@ -1,6 +1,10 @@ import io -import torch +import warnings + import onnx +import torch +from keras.layers import Lambda +from keras.models import Model from onnx2kerastl import onnx_to_keras, check_torch_keras_error @@ -26,7 +30,15 @@ def convert_and_test(model: torch.nn.Module, input_variable, verbose=True, change_ordering=False, - epsilon=1e-5): + epsilon=1e-5, + should_transform_inputs=False): k_model = torch2keras(model, input_variable, verbose=verbose, change_ordering=change_ordering) - error = check_torch_keras_error(model, k_model, input_variable, change_ordering=change_ordering, epsilon=epsilon) + error = check_torch_keras_error(model, k_model, input_variable, change_ordering=change_ordering, epsilon=epsilon, + should_transform_inputs=should_transform_inputs) + if is_lambda_layers_exist(k_model): + warnings.warn("Found Lambda layers") return error + + +def is_lambda_layers_exist(model: Model): + return any(isinstance(layer, Lambda) for layer in model.layers)