@terraref

A Reference Phenotyping Platform for Crop Breeding and Improvement

A DOE ARPA-E TERRA 2015 project

Pinned repositories

  1. reference-data

    Coordination of Data Products and Standards for TERRA reference data products

    Shell 6 1

  2. computing-pipeline

    Pipeline to Extract Plant Phenotypes from Reference Data

    Python 10 8

  3. documentation

    TERRAref documentation

    CSS 3 5

  4. tutorials

    Learn to use TERRA REF data and software

    HTML 2 7

  • Scripts and code relevant to the 8MP RGB stereo 3D cameras.

    Python 2 BSD-3-Clause Updated Jul 19, 2018
  • Scripts and code relevant to the 3D height scanner.

    Python BSD-3-Clause 1 issue needs help Updated Jul 18, 2018
  • ply file to plot level las file science function package

    Python BSD-3-Clause Updated Jul 18, 2018
  • Website / hub for development of the TERRAREF reference phenotyping platform

    JavaScript 1 4 Updated Jul 17, 2018
  • Python library for TERRA-REF specific modules and methods, e.g. those shared by multiple extractors.

    Python 2 1 BSD-3-Clause Updated Jul 17, 2018
  • Scripts and code relevant to the FLIR, PSII, NDVI, PRI and active reflectance (Crop Circle) sensors.

    Python 3 BSD-3-Clause Updated Jul 11, 2018
  • Pipeline to Extract Plant Phenotypes from Reference Data

    Python 10 8 BSD-3-Clause Updated Jul 11, 2018
  • TERRAref documentation

    CSS 3 5 Updated Jul 4, 2018
  • Github repo for ECSS workflow pilot project

    Python 1 1 Updated Jun 15, 2018
  • Scripts and code relevant to the SWIR and VNIR cameras.

    Python 1 3 BSD-3-Clause Updated Jun 13, 2018
  • Scripts and code for generally applicable metadata extraction, e.g. extracting geospatial footprints from multiple sensors' metadata.

    Python 1 BSD-3-Clause Updated Jun 13, 2018
  • Scripts and code relevant to the CO2 and environmental logger sensors, as well as Maricopa lightning/weather/irrigation data.

    Python 2 BSD-3-Clause Updated Jun 13, 2018
  • the new science functions in Stereo-RGB extractor

    Python BSD-3-Clause Updated Jun 13, 2018
  • Coordination of Data Products and Standards for TERRA reference data products

    Shell 6 1 BSD-3-Clause Updated Jun 13, 2018
  • XML files used to generate fixed metadata values for LemnaTec field scanner

    Updated May 23, 2018
  • Catalog of services available via TERRA-REF Analysis Workbench

    BSD-3-Clause Updated May 18, 2018
  • Device and sensor fixed metadata

    2 Updated May 17, 2018
  • Learn to use TERRA REF data and software

    HTML 2 7 BSD-3-Clause Updated May 17, 2018
  • Shiny application for visualizing trait data

    R 1 BSD-3-Clause Updated May 1, 2018
  • Repo for general QA/QC tools and extractors.

    Updated Mar 20, 2018
  • TERRA-REF Dockerfiles for Clowder toolserver

    HTML 2 Updated Mar 12, 2018
  • Species traits data

    R 12 Updated Mar 5, 2018
  • A REST server that provide helps locate file products.

    Python 1 Updated Feb 26, 2018
  • ICASA vocabulary

    HTML 3 BSD-3-Clause Updated Jan 31, 2018
  • useful science functions in 3d scanner

    Python BSD-3-Clause Updated Jan 29, 2018
  • plant height extractor science functions

    Python BSD-3-Clause Updated Jan 28, 2018
  • 1 Updated Jan 24, 2018
  • Scripts and code relevant to the PlantCV extractor. This is being split into a separate smaller repository for easier issue tracking and ongoing maintenance.

    Python 1 BSD-3-Clause Updated Jan 16, 2018
  • extractor function convert flir to geotiff

    Python BSD-3-Clause Updated Dec 18, 2017