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Commits on Jul 15, 2002
  1. This commit was manufactured by cvs2svn to create branch

    Nobody committed Jul 15, 2002
    'berkeley-gadfly'.
  2. bumped version number

    lstein committed Jul 15, 2002
  3. added sequence plugin to manifest

    lstein committed Jul 15, 2002
Commits on Jul 10, 2002
  1. fixed _subseq() to operate properly with Bio::DB::GFF objects; unfort…

    lstein committed Jul 10, 2002
    …unately the workaround for split locations is becoming problematic
Commits on Jul 7, 2002
  1. This is version 1.45.

    lstein committed Jul 7, 2002
  2. ported the fasta dumper to use the Markup module; however there is st…

    lstein committed Jul 7, 2002
    …ill a problem with background color mixing -- colors tend to black rather than to white
Commits on Jul 5, 2002
  1. Made Jason's SequenceDumper check that each format converter

    lstein committed Jul 5, 2002
    successfully loads before adding that format to the list.
    
    Added examples of CDS and translation glyphs to wormbase and yeast
    example conf files.
  2. Renamed Gudmundur's ncbi_to_gff.pl to process_ncbi_human.pl for

    lstein committed Jul 5, 2002
    consistency with the other process_* scripts.
    
    Added appropriate entries in install, manifest and makefile.
Commits on Jul 4, 2002
  1. a few changes to sequence dumper -- still needs to check for io modul…

    lstein committed Jul 4, 2002
    …es and modify popup choices accordingly
  2. Added support for the "coding" aggregator.

    lstein committed Jul 4, 2002
    Added support for using sub {} as the values of options (this only
    works for local features!!!!)
Commits on Jun 30, 2002
Commits on Jun 28, 2002
Commits on Jun 26, 2002
  1. fixed a soul-eating bug that caused restriction annotator to try to g…

    lstein committed Jun 26, 2002
    …enerate restriction map of entire chromosomes at once
  2. fixed various aesthetic problems; got bump control working properly o…

    lstein committed Jun 26, 2002
    …n plugins; fixed Go! vs Configure problems in plugins
  3. Added "global feature" tag to DNA

    lstein committed Jun 26, 2002
  4. Folded in changes to limit number of features shown.

    lstein committed Jun 26, 2002
    This is going to need BioPerl 1.02!!!!
Commits on Jun 19, 2002
Commits on Jun 12, 2002
  1. Fixed a problem that was causing display to stop halfway through

    lstein committed Jun 12, 2002
    whenever the restrictionannotator was loaded.
Commits on Jun 11, 2002
Commits on Jun 6, 2002
  1. handle overlapping coloring regions and bold and italics -- fix minor…

    Jason Stajich committed Jun 6, 2002
    … bug when feature started before the beginning of the region
Commits on Jun 3, 2002
Commits on Jun 2, 2002
  1. change defaults to include 100 and 200 bp zooms and change DNA featur…

    Jason Stajich committed Jun 2, 2002
    …e from sequence -> dna glyph
Commits on May 24, 2002
  1. Moved wormbase_transcript into the glyph list (and out of bioperl).

    lstein committed May 24, 2002
    Modified it so that it hopefully will show nice gray UTRs.
Commits on May 23, 2002
  1. added divide-by-zero check

    lstein committed May 23, 2002
Commits on May 21, 2002
  1. cleared bad uploaded files

    lstein committed May 21, 2002