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README.md visualizing one million cells Jun 1, 2017
images.ipynb updated for scanpy version 0.2 Jul 24, 2017

README.md

First compiled: May 29, 2017

Scanpy for analysis of single-cell images

Here, we discuss the pseudotime-based reconstruction of cell cycle from image data and compare it with the deep learning based approach of Eulenberg, Köhler, et al. (2017).