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  1. COMBINE-lab/cuttlefish COMBINE-lab/cuttlefish Public

    Building the compacted de Bruijn graph efficiently from references or reads.

    C++ 82 9

  2. COMBINE-lab/kmers COMBINE-lab/kmers Public

    A bit-packed k-mer representation (and relevant utilities) for rust

    Rust 47 10

  3. COMBINE-lab/pufferfish2 COMBINE-lab/pufferfish2 Public

    Rust 15 1

  4. COMBINE-lab/seine-rs COMBINE-lab/seine-rs Public

    A (rust)🦀 library and suite of tools for manipulating and processing the output of salmon, alevin, and alevin-fry 🐟

    Rust 7 2

  5. lrgr/EMF lrgr/EMF Public

    Jupyter Notebook 2

  6. COMBINE-lab/perplexity COMBINE-lab/perplexity Public

    Rust 5 2