diff --git a/JMolViewer/jmol.htm b/JMolViewer/jmol.htm new file mode 100644 index 0000000000..5daf397b47 --- /dev/null +++ b/JMolViewer/jmol.htm @@ -0,0 +1,20 @@ + + JMol Example + + + + + + + + + \ No newline at end of file diff --git a/JMolViewer/jmol/Jmol.js b/JMolViewer/jmol/Jmol.js new file mode 100644 index 0000000000..3c696b3ca0 --- /dev/null +++ b/JMolViewer/jmol/Jmol.js @@ -0,0 +1,1659 @@ +/* Jmol 12.0 script library Jmol.js 9:48 PM 1/31/2011 Bob Hanson + + checkbox heirarchy -- see http://chemapps.stolaf.edu/jmol/docs/examples-11/check.htm + + based on: + * + * Copyright (C) 2004-2005 Miguel, Jmol Development, www.jmol.org + * + * Contact: hansonr@stolaf.edu + * + * This library is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public + * License as published by the Free Software Foundation; either + * version 2.1 of the License, or (at your option) any later version. + * + * This library is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with this library; if not, write to the Free Software + * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA + * 02111-1307 USA. + */ + +// for documentation see www.jmol.org/jslibrary + +try{if(typeof(_jmol)!="undefined")exit() + +// place "?NOAPPLET" on your command line to check applet control action with a textarea +// place "?JMOLJAR=xxxxx" to use a specific jar file + +// bob hanson -- jmolResize(w,h) -- resizes absolutely or by percent (w or h 0.5 means 50%) +// angel herraez -- update of jmolResize(w,h,targetSuffix) so it is not tied to first applet +// bob hanson -- jmolEvaluate -- evaluates molecular math 8:37 AM 2/23/2007 +// bob hanson -- jmolScriptMessage -- returns all "scriptStatus" messages 8:37 AM 2/23/2007 +// bob hanson -- jmolScriptEcho -- returns all "scriptEcho" messages 8:37 AM 2/23/2007 +// bob hanson -- jmolScriptWait -- 11:31 AM 5/2/2006 +// bob hanson -- remove trailing separatorHTML in radio groups -- 12:18 PM 5/6/2006 +// bob hanson -- adds support for dynamic DOM script nodes 7:04 AM 5/19/2006 +// bob hanson -- adds try/catch for wiki - multiple code passes 7:05 AM 5/19/2006 +// bob hanson -- auto-initiates to defaultdir/defaultjar -- change as desired. +// bob hanson -- adding save/restore orientation w/ and w/o delay 11:49 AM 5/25/2006 +// bob hanson -- adding AjaxJS service 11:16 AM 6/3/2006 +// bob hanson -- fix for iframes not available for finding applet +// bob hanson -- added applet fake ?NOAPPLET URL flag +// bob hanson -- added jmolSetCallback(calbackName, funcName) 3:32 PM 6/13/2006 +// used PRIOR to jmolApplet() or jmolAppletInline() +// added 4th array element in jmolRadioGroup -- title +// added and id around link, checkbox, radio, menu +// fixing AJAX loads for MSIE/Opera-Mozilla incompatibility +// -- renamed Jmol-11.js from Jmol-new.js; JmolApplet.jar from JmolAppletProto.jar +// renamed Jmol.js for Jmol 11 distribution +// -- modified jmolRestoreOrientation() to be immediate, no 1-second delay +// bob hanson -- jmolScriptWait always returns a string -- 11:23 AM 9/16/2006 +// bh -- jmolCommandInput() +// bh -- jmolSetTranslation(TF) -- forces translation even if there might be message callback issues +// bh -- minor fixes suggested by Angel +// bh -- adds jmolSetSyncId() and jmolGetSyncId() +// bh 3/2008 -- adds jmolAppendInlineScript() and jmolAppendInlineArray() +// bh 3/2008 -- fixes IE7 bug in relation to jmolLoadInlineArray() +// bh 6/2008 -- adds jmolSetAppletWindow() +// Angel H. 6/2008 -- added html " + var t = "" + if (labelHtml.toLowerCase().indexOf("")>=0) { + t += eospan + eospan = ""; + } + t += "" +eospan; + if (_jmol.debugAlert) + alert(t); + return _jmolDocumentWrite(t); +} + +function jmolStartNewRadioGroup() { + ++_jmol.radioGroupCount; +} + +function jmolRadioGroup(arrayOfRadioButtons, separatorHtml, groupName, id, title) { + /* + + array: [radio1,radio2,radio3...] + where radioN = ["script","label",isSelected,"id","title"] + + */ + + _jmolInitCheck(); + var type = typeof arrayOfRadioButtons; + if (type != "object" || type == null || ! arrayOfRadioButtons.length) { + alert("invalid arrayOfRadioButtons"); + return; + } + separatorHtml != undefined && separatorHtml != null || (separatorHtml = "  "); + var len = arrayOfRadioButtons.length; + jmolStartNewRadioGroup(); + groupName || (groupName = "jmolRadioGroup" + (_jmol.radioGroupCount - 1)); + var t = ""; + for (var i = 0; i < len; ++i) { + if (i == len - 1) + separatorHtml = ""; + var radio = arrayOfRadioButtons[i]; + type = typeof radio; + if (type == "object") { + t += _jmolRadio(radio[0], radio[1], radio[2], separatorHtml, groupName, (radio.length > 3 ? radio[3]: (id ? id : groupName)+"_"+i), (radio.length > 4 ? radio[4] : 0), title); + } else { + t += _jmolRadio(radio, null, null, separatorHtml, groupName, (id ? id : groupName)+"_"+i, title); + } + } + t+="" + if (_jmol.debugAlert) + alert(t); + return _jmolDocumentWrite(t); +} + + +function jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName, id, title) { + _jmolInitCheck(); + if (_jmol.radioGroupCount == 0) + ++_jmol.radioGroupCount; + var t = _jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName, (id ? id : groupName + "_" + _jmol.radioCount), title ? title : 0); + if (_jmol.debugAlert) + alert(t); + return _jmolDocumentWrite(t); +} + +function jmolLink(script, label, id, title) { + _jmolInitCheck(); + id != undefined && id != null || (id = "jmolLink" + _jmol.linkCount); + label != undefined && label != null || (label = script.substring(0, 32)); + ++_jmol.linkCount; + var scriptIndex = _jmolAddScript(script); + var t = "" + label + ""; + if (_jmol.debugAlert) + alert(t); + return _jmolDocumentWrite(t); +} + +function jmolCommandInput(label, size, id, title) { + _jmolInitCheck(); + id != undefined && id != null || (id = "jmolCmd" + _jmol.cmdCount); + label != undefined && label != null || (label = "Execute"); + size != undefined && !isNaN(size) || (size = 60); + ++_jmol.cmdCount; + var t = ""; + if (_jmol.debugAlert) + alert(t); + return _jmolDocumentWrite(t); +} + +function _jmolCommandKeyPress(e, id, target) { + var keycode = (window.event ? window.event.keyCode : e ? e.which : 0); + if (keycode == 13) { + var inputBox = document.getElementById(id) + _jmolScriptExecute(inputBox, inputBox.value, target) + } +} + +function _jmolScriptExecute(element,script,target) { + if (typeof(script) == "object") + script[0](element, script, target) + else + jmolScript(script, target) +} + +function jmolMenu(arrayOfMenuItems, size, id, title) { + _jmolInitCheck(); + id != undefined && id != null || (id = "jmolMenu" + _jmol.menuCount); + ++_jmol.menuCount; + var type = typeof arrayOfMenuItems; + if (type != null && type == "object" && arrayOfMenuItems.length) { + var len = arrayOfMenuItems.length; + if (typeof size != "number" || size == 1) + size = null; + else if (size < 0) + size = len; + var sizeText = size ? " size='" + size + "' " : ""; + var t = "" + if (labelHtml.toLowerCase().indexOf("")>=0) { + t += eospan + eospan = ""; + } + t += "" +eospan + separatorHtml; + + return t; +} + +function _jmolFindApplet(target) { + // first look for the target in the current window + var applet = _jmolFindAppletInWindow(_jmol.appletWindow != null ? _jmol.appletWindow : window, target); + // THEN look for the target in child frames + if (applet == undefined) + applet = _jmolSearchFrames(window, target); + // FINALLY look for the target in sibling frames + if (applet == undefined) + applet = _jmolSearchFrames(top, target); // look starting in top frame + return applet; +} + +function _jmolGetApplet(targetSuffix){ + var target = "jmolApplet" + (targetSuffix ? targetSuffix : "0"); + var applet = _jmolFindApplet(target); + if (applet) return applet + _jmol.alerted || alert("could not find applet " + target); + _jmol.alerted = true; + return null +} + +function _jmolSearchFrames(win, target) { + var applet; + var frames = win.frames; + if (frames && frames.length) { // look in all the frames below this window + try{ + for (var i = 0; i < frames.length; ++i) { + applet = _jmolSearchFrames(frames[i], target); + if (applet) + return applet; + } + }catch(e) { + if (_jmol.debugAlert) + alert("Jmol.js _jmolSearchFrames cannot access " + win.name + ".frame[" + i + "] consider using jmolSetAppletWindow()") + } + } + return applet = _jmolFindAppletInWindow(win, target) +} + +function _jmolFindAppletInWindow(win, target) { + var doc = win.document; + if (doc.getElementById(target)) + return doc.getElementById(target); + else if (doc.applets) + return doc.applets[target]; + else + return doc[target]; +} + +function _jmolAddScript(script) { + if (!script) + return 0; + var index = _jmol.scripts.length; + _jmol.scripts[index] = script; + return index; +} + +function _jmolClick(elementClicked, scriptIndex, targetSuffix) { + _jmol.element = elementClicked; + _jmolScriptExecute(elementClicked, _jmol.scripts[scriptIndex], targetSuffix); +} + +function _jmolMenuSelected(menuObject, targetSuffix) { + var scriptIndex = menuObject.value; + if (scriptIndex != undefined) { + _jmolScriptExecute(menuObject, _jmol.scripts[scriptIndex], targetSuffix); + return; + } + var len = menuObject.length; + if (typeof len == "number") { + for (var i = 0; i < len; ++i) { + if (menuObject[i].selected) { + _jmolClick(menuObject[i], menuObject[i].value, targetSuffix); + return; + } + } + } + alert("?Que? menu selected bug #8734"); +} + + +_jmol.checkboxMasters = {}; +_jmol.checkboxItems = {}; + +function jmolSetCheckboxGroup(chkMaster,chkBox) { + var id = chkMaster; + if(typeof(id)=="number")id = "jmolCheckbox" + id; + chkMaster = document.getElementById(id); + if (!chkMaster)alert("jmolSetCheckboxGroup: master checkbox not found: " + id); + var m = _jmol.checkboxMasters[id] = {}; + m.chkMaster = chkMaster; + m.chkGroup = {}; + for (var i = 1; i < arguments.length; i++){ + var id = arguments[i]; + if(typeof(id)=="number")id = "jmolCheckbox" + id; + checkboxItem = document.getElementById(id); + if (!checkboxItem)alert("jmolSetCheckboxGroup: group checkbox not found: " + id); + m.chkGroup[id] = checkboxItem; + _jmol.checkboxItems[id] = m; + } +} + +function _jmolNotifyMaster(m){ + //called when a group item is checked + var allOn = true; + var allOff = true; + for (var chkBox in m.chkGroup){ + if(m.chkGroup[chkBox].checked) + allOff = false; + else + allOn = false; + } + if (allOn)m.chkMaster.checked = true; + if (allOff)m.chkMaster.checked = false; + if ((allOn || allOff) && _jmol.checkboxItems[m.chkMaster.id]) + _jmolNotifyMaster(_jmol.checkboxItems[m.chkMaster.id]) +} + +function _jmolNotifyGroup(m, isOn){ + //called when a master item is checked + for (var chkBox in m.chkGroup){ + var item = m.chkGroup[chkBox] + item.checked = isOn; + if (_jmol.checkboxMasters[item.id]) + _jmolNotifyGroup(_jmol.checkboxMasters[item.id], isOn) + } +} + +function _jmolCbClick(ckbox, whenChecked, whenUnchecked, targetSuffix) { + _jmol.control = ckbox + _jmolClick(ckbox, ckbox.checked ? whenChecked : whenUnchecked, targetSuffix); + if(_jmol.checkboxMasters[ckbox.id]) + _jmolNotifyGroup(_jmol.checkboxMasters[ckbox.id], ckbox.checked) + if(_jmol.checkboxItems[ckbox.id]) + _jmolNotifyMaster(_jmol.checkboxItems[ckbox.id]) +} + +function _jmolCbOver(ckbox, whenChecked, whenUnchecked) { + window.status = _jmol.scripts[ckbox.checked ? whenUnchecked : whenChecked]; +} + +function _jmolMouseOver(scriptIndex) { + window.status = _jmol.scripts[scriptIndex]; +} + +function _jmolMouseOut() { + window.status = " "; + return true; +} + +function _jmolSetCodebase(codebase) { + _jmol.codebase = codebase ? codebase : "."; + if (_jmol.debugAlert) + alert("jmolCodebase=" + _jmol.codebase); +} + +function _jmolOnloadResetForms() { + // must be evaluated ONLY once + _jmol.previousOnloadHandler = window.onload; + window.onload = + function() { + with (_jmol) { + if (buttonCount+checkboxCount+menuCount+radioCount+radioGroupCount > 0) { + var forms = document.forms; + for (var i = forms.length; --i >= 0; ) + forms[i].reset(); + } + if (previousOnloadHandler) + previousOnloadHandler(); + } + } +} + +//////////////////////////////////// +/////extensions for getProperty///// +//////////////////////////////////// + + +function _jmolEvalJSON(s,key){ + s=s+"" + if(!s)return [] + if(s.charAt(0)!="{"){ + if(s.indexOf(" | ")>=0)s=s.replace(/\ \|\ /g, "\n") + return s + } + var A = eval("("+s+")") + if(!A)return + if(key && A[key])A=A[key] + return A +} + +function _jmolEnumerateObject(A,key){ + var sout="" + if(typeof(A) == "string" && A!="null"){ + sout+="\n"+key+"=\""+A+"\"" + }else if(!isNaN(A)||A==null){ + sout+="\n"+key+"="+(A+""==""?"null":A) + }else if(A.length){ + sout+=key+"=[]" + for(var i=0;ib[0]?-1:0) +} + +function _jmolSortMessages(A){ + if(!A || typeof(A)!="object")return [] + var B = [] + for(var i=A.length-1;i>=0;i--)for(var j=0;j=0;) + for(var j=0;j< Ret[i].length;j++) + s+=Ret[i][j]+"\n" + return s +} + +function jmolScriptWaitOutput(script, targetSuffix) { + targetSuffix == undefined && (targetSuffix="0") + var ret = "" + try{ + if (script) { + _jmolCheckBrowser(); + var applet=_jmolGetApplet(targetSuffix); + if (applet) ret += applet.scriptWaitOutput(script); + } + }catch(e){ + } + return ret; +} + +function jmolEvaluate(molecularMath, targetSuffix) { + + //carries out molecular math on a model + + targetSuffix == undefined && (targetSuffix="0") + var result = "" + jmolGetPropertyAsJavaObject("evaluate", molecularMath, targetSuffix); + var s = result.replace(/\-*\d+/,"") + if (s == "" && !isNaN(parseInt(result)))return parseInt(result); + var s = result.replace(/\-*\d*\.\d*/,"") + if (s == "" && !isNaN(parseFloat(result)))return parseFloat(result); + return result; +} + +function jmolScriptEcho(script, targetSuffix) { + // returns a newline-separated list of all echos from a script + targetSuffix == undefined && (targetSuffix="0") + var Ret=jmolScriptWaitAsArray(script, targetSuffix) + var s = "" + for(var i=Ret.length;--i>=0;) + for(var j=Ret[i].length;--j>=0;) + if (Ret[i][j][1] == "scriptEcho")s+=Ret[i][j][3]+"\n" + return s.replace(/ \| /g, "\n") +} + + +function jmolScriptMessage(script, targetSuffix) { + // returns a newline-separated list of all messages from a script, ending with "script completed\n" + targetSuffix == undefined && (targetSuffix="0") + var Ret=jmolScriptWaitAsArray(script, targetSuffix) + var s = "" + for(var i=Ret.length;--i>=0;) + for(var j=Ret[i].length;--j>=0;) + if (Ret[i][j][1] == "scriptStatus")s+=Ret[i][j][3]+"\n" + return s.replace(/ \| /g, "\n") +} + + +function jmolScriptWaitAsArray(script, targetSuffix) { + var ret = "" + try{ + jmolGetStatus("scriptEcho,scriptMessage,scriptStatus,scriptError",targetSuffix) + if (script) { + _jmolCheckBrowser(); + var applet=_jmolGetApplet(targetSuffix); + if (applet) ret += applet.scriptWait(script); + ret = _jmolEvalJSON(ret,"jmolStatus") + if(typeof ret == "object") + return ret + } + }catch(e){ + } + return [[ret]] +} + + + +//////////// save/restore orientation ///////////// + +function jmolSaveOrientation(id, targetSuffix) { + targetSuffix == undefined && (targetSuffix="0") + return _jmol["savedOrientation"+id] = jmolGetPropertyAsArray("orientationInfo","info",targetSuffix).moveTo +} + +function jmolRestoreOrientation(id, targetSuffix) { + targetSuffix == undefined && (targetSuffix="0") + var s=_jmol["savedOrientation"+id] + if (!s || s == "")return + s=s.replace(/1\.0/,"0") + return jmolScriptWait(s,targetSuffix) +} + +function jmolRestoreOrientationDelayed(id, delay, targetSuffix) { + arguments.length < 2 && (delay=1) + targetSuffix == undefined && (targetSuffix="0") + var s=_jmol["savedOrientation"+id] + if (!s || s == "")return + s=s.replace(/1\.0/,delay) + return jmolScriptWait(s,targetSuffix) +} + +//////////// add parameter ///////////// +/* + * for adding callbacks or other parameters. Use: + + jmolSetDocument(0) + var s= jmolApplet(....) + s = jmolAppletAddParam(s,"messageCallback", "myFunctionName") + document.write(s) + jmolSetDocument(document) // if you want to then write buttons and such normally + + */ + +function jmolAppletAddParam(appletCode,name,value){ + return (value == "" ? appletCode : appletCode.replace(/\\n" + +"" + +"Applet would be here" + +"

" + +"" + return _jmolDocumentWrite(s) + } + + _jmolFindApplet = function(){return jmolApplet0} + + jmolApplet0 = { + script: function(script){document.getElementById("fakeApplet").value="\njmolScript:\n"+script} + ,scriptWait: function(script){document.getElementById("fakeApplet").value="\njmolScriptWait:\n"+script} + ,loadInline: function(data,script){document.getElementById("fakeApplet").value="\njmolLoadInline data:\n"+data+"\n\nscript:\n"+script} + } +} + + +/////////////////////////////////////////// + + // This should no longer be needed, jmolResizeApplet() is better; kept for backwards compatibility + /* + Resizes absolutely (pixels) or by percent of window (w or h 0.5 means 50%). + targetSuffix is optional and defaults to zero (first applet in page). + Both w and h are optional, but needed if you want to use targetSuffix. + h defaults to w + w defaults to 100% of window + If either w or h is between 0 and 1, then it is taken as percent/100. + If either w or h is greater than 1, then it is taken as a size (pixels). + */ +function jmolResize(w,h,targetSuffix) { + _jmol.alerted = true; + var percentW = (!w ? 100 : w <= 1 && w > 0 ? w * 100 : 0); + var percentH = (!h ? percentW : h <= 1 && h > 0 ? h * 100 : 0); + if (_jmol.browser=="msie") { + var width=document.body.clientWidth; + var height=document.body.clientHeight; + } else { + var netscapeScrollWidth=15; + var width=window.innerWidth - netscapeScrollWidth; + var height=window.innerHeight-netscapeScrollWidth; + } + var applet = _jmolGetApplet(targetSuffix); + if(!applet)return; + applet.style.width = (percentW ? width * percentW/100 : w)+"px"; + applet.style.height = (percentH ? height * percentH/100 : (h ? h : w))+"px"; + //title=width + " " + height + " " + (new Date()); +} + +// 13 Jun 09 -- makes jmolResize() obsolete (kept for backwards compatibility) +function jmolResizeApplet(size,targetSuffix) { + // See _jmolGetAppletSize() for the formats accepted as size [same used by jmolApplet()] + // Special case: an empty value for width or height is accepted, meaning no change in that dimension. + _jmol.alerted = true; + var applet = _jmolGetApplet(targetSuffix); + if(!applet)return; + var sz = _jmolGetAppletSize(size, "px"); + sz[0] && (applet.style.width = sz[0]); + sz[1] && (applet.style.height = sz[1]); +} + +function _jmolGetAppletSize(size, units) { + /* Accepts single number or 2-value array, each one can be one of: + percent (text string ending %), decimal 0 to 1 (percent/100), number, or text string (interpreted as nr.) + [width, height] array of strings is returned, with units added if specified. + Percent is relative to container div or element (which should have explicitly set size). + */ + var width, height; + if ( (typeof size) == "object" && size != null ) { + width = size[0]; height = size[1]; + } else { + width = height = size; + } + return [_jmolFixDim(width, units), _jmolFixDim(height, units)]; +} + +function _jmolFixDim(x, units) { + var sx = "" + x; + return (sx.length == 0 ? (units ? "" : _jmol.allowedJmolSize[2]) + : sx.indexOf("%") == sx.length-1 ? sx + : (x = parseFloat(x)) <= 1 && x > 0 ? x * 100 + "%" + : (isNaN(x = Math.floor(x)) ? _jmol.allowedJmolSize[2] + : x < _jmol.allowedJmolSize[0] ? _jmol.allowedJmolSize[0] + : x > _jmol.allowedJmolSize[1] ? _jmol.allowedJmolSize[1] + : x) + (units ? units : "")); +} + + + + diff --git a/JMolViewer/jmol/JmolApplet0.jar b/JMolViewer/jmol/JmolApplet0.jar new file mode 100644 index 0000000000..3c03eb37ce Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_Console.jar b/JMolViewer/jmol/JmolApplet0_Console.jar new file mode 100644 index 0000000000..3589c63483 Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_Console.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_Minimize.jar b/JMolViewer/jmol/JmolApplet0_Minimize.jar new file mode 100644 index 0000000000..de424e1f80 Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_Minimize.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_Popup.jar b/JMolViewer/jmol/JmolApplet0_Popup.jar new file mode 100644 index 0000000000..b5d00470df Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_Popup.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_ReadersCifPdb.jar b/JMolViewer/jmol/JmolApplet0_ReadersCifPdb.jar new file mode 100644 index 0000000000..dec4cdc416 Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_ReadersCifPdb.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_ReadersMolXyz.jar b/JMolViewer/jmol/JmolApplet0_ReadersMolXyz.jar new file mode 100644 index 0000000000..af61ddfd15 Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_ReadersMolXyz.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_ReadersMore.jar b/JMolViewer/jmol/JmolApplet0_ReadersMore.jar new file mode 100644 index 0000000000..41218a8ee5 Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_ReadersMore.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_ReadersQuantum.jar b/JMolViewer/jmol/JmolApplet0_ReadersQuantum.jar new file mode 100644 index 0000000000..b5b5c49679 Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_ReadersQuantum.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_ReadersSimple.jar b/JMolViewer/jmol/JmolApplet0_ReadersSimple.jar new file mode 100644 index 0000000000..00427484ab Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_ReadersSimple.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_ReadersXml.jar b/JMolViewer/jmol/JmolApplet0_ReadersXml.jar new file mode 100644 index 0000000000..3da2367fc9 Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_ReadersXml.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_ReadersXtal.jar b/JMolViewer/jmol/JmolApplet0_ReadersXtal.jar new file mode 100644 index 0000000000..c22b7cac27 Binary files /dev/null and b/JMolViewer/jmol/JmolApplet0_ReadersXtal.jar differ diff --git a/JMolViewer/jmol/JmolApplet0_ShapeBio.jar b/JMolViewer/jmol/JmolApplet0_ShapeBio.jar new file mode 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b/JMolViewer/jmol/JmolAppletSigned0_i18n_tr.jar new file mode 100644 index 0000000000..688d78b67c Binary files /dev/null and b/JMolViewer/jmol/JmolAppletSigned0_i18n_tr.jar differ diff --git a/JMolViewer/jmol/JmolAppletSigned0_i18n_uk.jar b/JMolViewer/jmol/JmolAppletSigned0_i18n_uk.jar new file mode 100644 index 0000000000..fda929d362 Binary files /dev/null and b/JMolViewer/jmol/JmolAppletSigned0_i18n_uk.jar differ diff --git a/JMolViewer/jmol/JmolAppletSigned0_i18n_zh_CN.jar b/JMolViewer/jmol/JmolAppletSigned0_i18n_zh_CN.jar new file mode 100644 index 0000000000..c8b9cc5c4e Binary files /dev/null and b/JMolViewer/jmol/JmolAppletSigned0_i18n_zh_CN.jar differ diff --git a/JMolViewer/jmol/JmolAppletSigned0_i18n_zh_TW.jar b/JMolViewer/jmol/JmolAppletSigned0_i18n_zh_TW.jar new file mode 100644 index 0000000000..03ed4edf19 Binary files /dev/null and b/JMolViewer/jmol/JmolAppletSigned0_i18n_zh_TW.jar differ diff --git a/modules/xerte/parent_templates/Nottingham/Nottingham.rlt b/modules/xerte/parent_templates/Nottingham/Nottingham.rlt index 141de9df31..9ff1eae505 100644 --- a/modules/xerte/parent_templates/Nottingham/Nottingham.rlt +++ b/modules/xerte/parent_templates/Nottingham/Nottingham.rlt @@ -1 +1 @@ - '); newChild = newXML.firstChild; newChild.attributes.title = 'Main Menu'; newChild.attributes.linkID = extXML.firstChild.childNodes[i].attributes.linkID; ifc.appendChild(newChild); } else { pgOffset = 1; } debug("-=" + templateData.learningObject[0].test); //custom interface if (templateData.learningObject[0].controller != undefined){ icon.nextSibling.attributes.swf = templateData.learningObject[0].controller; icon.nextSibling.attributes.visuals = 0; } //help file if (templateData.learningObject[0].nfo != undefined){ icon.nextSibling.attributes.helpfile = templateData.learningObject[0].nfo; } //default text size if (templateData.learningObject[0].textSize != undefined){ STYLES.defaultSize = templateData.learningObject[0].textSize; STYLES.inputSize = templateData.learningObject[0].textSize; } for (i = 0; i < extXML.firstChild.childNodes.length; i++){ //build this file dynamically modName = extXML.firstChild.childNodes[i].nodeName; if (modName == 'xerteModel'){ newXML = new XML(''); //is there an initObject...? if (extXML.firstChild.childNodes[i].attributes.initObject != undefined){ newXML.firstChild.attributes.initObject = extXML.firstChild.childNodes[i].attributes.initObject; } } else { newXML = new XML(''); } newChild = newXML.firstChild; newChild.attributes.title = extXML.firstChild.childNodes[i].attributes.name; newChild.attributes.linkID = extXML.firstChild.childNodes[i].attributes.linkID; if (extXML.firstChild.childNodes[i].attributes.linkID == _level0.linkID && extXML.firstChild.childNodes[i].attributes.linkID != undefined){ linkIndex = i; } ifc.appendChild(newChild); } ]]> \ No newline at end of file + '); newChild = newXML.firstChild; newChild.attributes.title = 'Main Menu'; newChild.attributes.linkID = extXML.firstChild.childNodes[i].attributes.linkID; ifc.appendChild(newChild); } else { pgOffset = 1; } //custom interface if (templateData.learningObject[0].controller != undefined){ icon.nextSibling.attributes.swf = templateData.learningObject[0].controller; icon.nextSibling.attributes.visuals = 0; } //help file if (templateData.learningObject[0].nfo != undefined){ icon.nextSibling.attributes.helpfile = templateData.learningObject[0].nfo; } //default text size if (templateData.learningObject[0].textSize != undefined){ STYLES.defaultSize = templateData.learningObject[0].textSize; STYLES.inputSize = templateData.learningObject[0].textSize; } for (i = 0; i < extXML.firstChild.childNodes.length; i++){ //build this file dynamically modName = extXML.firstChild.childNodes[i].nodeName; if (modName == 'xerteModel'){ newXML = new XML(''); //is there an initObject...? if (extXML.firstChild.childNodes[i].attributes.initObject != undefined){ newXML.firstChild.attributes.initObject = extXML.firstChild.childNodes[i].attributes.initObject; } } else { newXML = new XML(''); } newChild = newXML.firstChild; newChild.attributes.title = extXML.firstChild.childNodes[i].attributes.name; newChild.attributes.linkID = extXML.firstChild.childNodes[i].attributes.linkID; if (extXML.firstChild.childNodes[i].attributes.linkID == _level0.linkID && extXML.firstChild.childNodes[i].attributes.linkID != undefined){ linkIndex = i; } ifc.appendChild(newChild); } ]]> \ No newline at end of file diff --git a/modules/xerte/parent_templates/Nottingham/data.xwd b/modules/xerte/parent_templates/Nottingham/data.xwd index 16e10ca0c8..8689ecabba 100644 --- a/modules/xerte/parent_templates/Nottingham/data.xwd +++ b/modules/xerte/parent_templates/Nottingham/data.xwd @@ -58,6 +58,7 @@ ]]> + ]]> ]]> ]]> ]]> @@ -90,6 +91,21 @@ + + + + + + + + + + + + + + + @@ -431,6 +447,8 @@ + + diff --git a/modules/xerte/parent_templates/Nottingham/models/jmol.rlm b/modules/xerte/parent_templates/Nottingham/models/jmol.rlm new file mode 100644 index 0000000000..b3700a443c --- /dev/null +++ b/modules/xerte/parent_templates/Nottingham/models/jmol.rlm @@ -0,0 +1 @@ +
' + pageIcon.templateData.jmol[0].tip + '}]]> \ No newline at end of file diff --git a/modules/xerte/parent_templates/Nottingham/models/mcq.rlm b/modules/xerte/parent_templates/Nottingham/models/mcq.rlm index f13640e6a6..94906d02fc 100644 --- a/modules/xerte/parent_templates/Nottingham/models/mcq.rlm +++ b/modules/xerte/parent_templates/Nottingham/models/mcq.rlm @@ -1 +1 @@ - Feedback
' + fb; ]]> \ No newline at end of file + Feedback
' + fb; ]]> \ No newline at end of file