moulinette

A collection of scripts related to biochemistry.

NMR (Nuclear Magnetic Resonance) collection

TODO

PDB (Protein Data Bank) collection

Interface residues analysis (PyMOL integration)

To execute the scripts,

1. Download a ZIP of this repository

cd PDB/
pymol -cqx fetch_and_store.py
./generate_config.py
./list.py
./list_spiced.py
./resn_statistics.py
./PDB/green_statistics.py ./PDB/test/green_fastas.txt ./PDB/test/green_IR.txt

Useful resources

Install:

• http://pymolwiki.org/index.php/Main_Page
• http://www.pymolwiki.org/index.php/MAC_Install
• http://www.pymolwiki.org/index.php/Linux_Install
• http://www.pymolwiki.org/index.php/Launching_From_a_Script

Script writing:

• http://pymolwiki.org/index.php/FetchLocal
• http://pymolwiki.org/index.php/LoadDir
• http://pymolwiki.org/index.php/Process_All_Files_In_Directory