Disease outbreak reconstruction from epidemiological and genetic data
Welcome to the project page of outbreaker! This page is dedicated to the development of the R package outbreaker. Whenever possible, it is recommended to use the development version of the package rather than the older CRAN version. The devel version (at least the master branch) is meant to be as functional as the CRAN version, but integrates the latest new features and bug fixes.
For documentation and tutorials, see The R-epi-project.
Installing outbreaker devel
To install the development version from github (the package devtools is required):
Once installed, the package can be loaded using: