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  • UWV / University of Amsterdam
  • Amsterdam


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Hi there 👋

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  1. barberislab/Forkhead-mediated_regulation barberislab/Forkhead-mediated_regulation Public

    A summarizing analysis of Fkh1,2 target genes as indicated by 6 ChIP binding studies and an overexpression and deletion study |

    Jupyter Notebook

  2. barberislab/ChIP-exo_Fkh1_Fkh2 barberislab/ChIP-exo_Fkh1_Fkh2 Public

    ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast | T.D.G.A. Mondeel, P. Holland, J. Nielsen and M. Barberis | 2019 | htt…


  3. barberislab/Autonomous_minimal_cell_cycle_oscillator barberislab/Autonomous_minimal_cell_cycle_oscillator Public

    Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs | Thierry D.G.A. Mondeel, Oleksandr Ivanov, Hans V. Westerhoff, Wolfram…

    Jupyter Notebook

  4. barberislab/GEMMER barberislab/GEMMER Public

    GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae | Mondeel TDGA, Crémazy F, Barberis M. | Bioinformatics | 2018 |…

    PHP 1 1

  5. HCC_flux_balance_analysis HCC_flux_balance_analysis Public

    Simultaneous Integration of Gene Expression and Nutrient Availability for Studying the Metabolism of Hepatocellular Carcinoma Cell Lines | Ewelina Węglarz-Tomczak, Thierry D.G.A. Mondeel, Diewertje…

    Jupyter Notebook 2 1

  6. Systems_Biology_FBA_tutorial Systems_Biology_FBA_tutorial Public

    Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam

    Jupyter Notebook 11 5