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.ipynb_checkpoints
data
README.md
dataset.py
dl_extract_prepare.sh
model.py
notebook.ipynb
prepare_dataset.py
requirements.txt
utils.py

README.md

Nuclei Image Segmentation With UNets

Reproduces the results in Blog Entry.

Setup

  1. Install dependencies: pip install -r requirements.txt
  2. Follow Kaggle's installation and configuration documentation to install and configure the kaggle cli
  3. Go to Kaggle's 2018 Data Science Bowl Competition , click on "Late Submission" and accept the terms and conditions to get access to the data.
  4. Run ./dl_extract_prepare.sh to download, extract and prepare the data.

Running notebook

  1. Start jupyter notebook jupyter notebook
  2. Open notebook.ipynb