Skip to content

recurse_layout fails for very deep trees #311

@teng-gao

Description

@teng-gao

Hi @thomasp85,

When plotting a deep tree (height > 4000), we run into the issue of C stack overflow, triggered by the recursions in recurse_layout.

Reproducible example: tree_final_1.rds.zip

gtree = readRDS('tree_final_1.rds')
gtree %>% ggraph(layout = 'dendrogram') 

output:

Error: C stack usage  7969588 is too close to the limit

traceback:

....
14: recurse_layout(gr, i, layout, direction, offset)
13: recurse_layout(gr, i, layout, direction, offset)
12: recurse_layout(gr, i, layout, direction, offset)
11: recurse_layout(gr, i, layout, direction, offset)
10: recurse_layout(gr, i, layout, direction, offset)
9: recurse_layout(graph, i, nodes, direction = direction, offset)
8: layout_fun(graph, circular = circular, ...)
7: layout_to_table.character(layout, graph, circular = circular, 
       ...)
6: layout_to_table(layout, graph, circular = circular, ...)
5: create_layout.tbl_graph(graph, layout, ...)
4: create_layout(graph, layout, ...)
3: ggplot(data = create_layout(graph, layout, ...), environment = envir)
2: ggraph(., layout = "dendrogram")
1: gtree %>% ggraph(layout = "dendrogram")

Would really appreciate your help on this!

Thanks,
Teng

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions