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Add README and LICENSE

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commit 6a9982f9257cdce026010315cf19a76ad776ccaa 1 parent ce566a1
@thomie authored
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1  Ics_Opener_To_Tiff.java
@@ -17,6 +17,7 @@
Author: Nico Stuurman <nico@cmp.ucsf.edu>
Modified by Wayne Rashband (wsr)
+ Modified by Thomas Miedema <thomasmiedema@gmail.com>
*/
public class Ics_Opener_To_Tiff extends Opener implements PlugIn {
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10 LICENSE
@@ -0,0 +1,10 @@
+Copyright © 2003-2008 The Regents of the University of California and the Howard Hughes Medical Institute.
+All Rights Reserved.
+
+Permission to use, copy, modify, and distribute this software and its documentation for educational, research and non-profit purposes, without fee, and without a written agreement is hereby granted, provided that the above copyright notice, this paragraph and the following three paragraphs appear in all copies.
+
+Permission to incorporate this software into commercial products may be obtained by contacting the Office of Technology Management at the University of California San Francisco [Sunita Rajdev, Ph.D., Licensing Officer, UCSF Office of Technology Management. 185 Berry St, Suite 4603, San Francisco, CA 94107]. .]
+
+This software program and documentation are copyrighted by The Regents of the University of California acting on behalf of the University of California San Francisco via its Office of Technology Management and the Howard Hughes Medical Institute (collectively, the “Institution”). The software program and documentation are supplied "as is", without any accompanying services from the Institution. The Institution does not warrant that the operation of the program will be uninterrupted or error-free. The end-user understands that the program was developed for research purposes and is advised not to rely exclusively on the program for any reason.
+
+IN NO EVENT SHALL THE INSTITUTION BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF THE INSTITUTION HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. THE INSTITUTION SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE SOFTWARE PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE INSTITUTION HAS NO OBLIGATIONS TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
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19 README
@@ -0,0 +1,19 @@
+See: http://valelab.ucsf.edu/~nico/IJplugins/Ics_Opener.html
+
+With this version you can select multiple files at once. It will save channel 3 to tiff files, and ignore all other channels.
+
+* Download the file `Ics_Opener_To_Tiff.jar` and put it in the plugins directory of
+
+* Select this option im ImageJ:
+Edit -> Options -> Input/Output -> 'Use JFileChooser to open/save'
+
+* To convert the Ics files to Tiff:
+Plugins -> InputOutput -> Ics/Ids channel 3 to Tiff
+
+Use the Contol key the select multiple files at once, or type this in the File Name box: *.ics or *.tif.
+
+
+See the file make for compile and packaging instructions.
+
+Contact me if you have encounter any problems.
+http://github.com/thomie/ics2tiff
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8 make
@@ -1,3 +1,7 @@
+# Usage: ./make
-javac -classpath ../imagej-1.44c/ Ics_Opener_To_Tiff.java
-jar cvfM Ics_Opener_To_Tiff.jar *
+# sudo apt-get imagej
+# sudo apt-get source imagej
+javac -classpath ../../forks/imagej-1.44c/ Ics_Opener_To_Tiff.java
+jar cvfM Ics_Opener_To_Tiff.jar *.class *.java *.config make LICENSE README
+ln -sf `pwd`/Ics_Opener_To_Tiff.jar $HOME/.imagej/plugins/Ics_Opener_To_Tiff.jar
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9 plugins.config
@@ -1,10 +1,11 @@
# Name: IicsOpenerToTiff
-# Author: Thomas Miedema
+# Author: Nico Stuurman
+# Modified by: Thomas Miedema
# Version: 0.2.1
# Date: 2011/03/15
# Requires: ImageJ 1.31s
# Generate the jar file using: "jar cvfM Ics_Opener_To_Tiff.jar *"
-File>Import, "ICS/IDS channel 3 to TIFF", Ics_Opener_To_Tiff("open")
-Plugins>InputOutput, "ICS/IDS channel 3 to TIFF ", Ics_Opener_To_Tiff("open")
-Help>About Plugins, "ICS/IDS channel 3 to TIFF ", Ics_Opener_To_Tiff("about")
+File>Import, "ICS/IDS channel 3 to TIFF..", Ics_Opener_To_Tiff("open")
+Plugins>InputOutput, "ICS/IDS channel 3 to TIFF.. ", Ics_Opener_To_Tiff("open")
+Help>About Plugins, "ICS/IDS channel 3 to TIFF.. ", Ics_Opener_To_Tiff("about")
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