Simulation of prokaryotic genomes using GPUs
Copyright Thomas Sakoparnig
You can run python recombSim4Letters.py -h to get further information on how to run the simulation software. After your simulation is complete you can run python analyseGenotypes4Letters.py in order to generate a phylip format multiple alignment file.
In order to run it you need to have Python 3 and the numba package (http://numba.pydata.org/) installed. Furthermore, you need to have a CUDA compatible GPU installed at your system.