Skip to content

Parralel processing fails with function \"all_nominal\" (related to to issue #159) #160

Description

@kelseygonzalez

Issued discovered during the Applied machine learning workshop. Related to issue #159 .
suggested to submit issue from @jyuu .

library(tidymodels)
#> Registered S3 method overwritten by 'xts':
#>   method     from
#>   as.zoo.xts zoo
#> -- Attaching packages ----------------------------------------------------------- tidymodels 0.0.3 --
#> v broom     0.5.3     v purrr     0.3.3
#> v dials     0.0.4     v recipes   0.1.9
#> v dplyr     0.8.3     v rsample   0.0.5
#> v ggplot2   3.2.1     v tibble    2.1.3
#> v infer     0.5.1     v yardstick 0.0.4
#> v parsnip   0.0.5
#> -- Conflicts -------------------------------------------------------------- tidymodels_conflicts() --
#> x purrr::discard()    masks scales::discard()
#> x dplyr::filter()     masks stats::filter()
#> x dplyr::lag()        masks stats::lag()
#> x ggplot2::margin()   masks dials::margin()
#> x recipes::step()     masks stats::step()
#> x recipes::yj_trans() masks scales::yj_trans()
library(tune)
library(doParallel)
#> Loading required package: foreach
#> 
#> Attaching package: 'foreach'
#> The following objects are masked from 'package:purrr':
#> 
#>     accumulate, when
#> Loading required package: iterators
#> Loading required package: parallel

data(Chicago)

us_hol <- 
  timeDate::listHolidays() %>% 
  stringr::str_subset("(^US)|(Easter)")

chi_rec <-
  recipe(ridership ~ ., data = Chicago) %>%
  step_holiday(date, holidays = us_hol) %>%
  step_date(date) %>%
  step_rm(date) %>%
  step_dummy(all_nominal()) %>%
  step_zv(all_predictors())

chi_folds <- rolling_origin(Chicago, initial = 364 * 15, assess = 7 * 4, skip = 7 * 4, cumulative = FALSE)

glmn_grid <- expand.grid(penalty = 10^seq(-3, -1, 
                                          length.out = 20), 
                         mixture = (0:5)/5)

glmn_rec <- chi_rec %>%  step_normalize(all_predictors()) 
glmn_mod <-
  linear_reg(penalty = tune(), mixture = tune()) %>% set_engine("glmnet")

ctrl <- control_grid(save_pred = TRUE,
                           verbose = TRUE)

glmn_tune <-
  tune_grid(
    glmn_rec,
    model = glmn_mod,
    resamples = chi_folds,
    grid = glmn_grid,
    control = ctrl
  )
#> i Slice1: recipe
#> v Slice1: recipe
#> i Slice1: model 1/6
#> v Slice1: model 1/6
#> i Slice1: model 1/6 (predictions)
#> i Slice1: model 2/6
#> v Slice1: model 2/6
#> i Slice1: model 2/6 (predictions)
#> i Slice1: model 3/6
#> v Slice1: model 3/6
#> i Slice1: model 3/6 (predictions)
#> i Slice1: model 4/6
#> v Slice1: model 4/6
#> i Slice1: model 4/6 (predictions)
#> i Slice1: model 5/6
#> v Slice1: model 5/6
#> i Slice1: model 5/6 (predictions)
#> i Slice1: model 6/6
#> v Slice1: model 6/6
#> i Slice1: model 6/6 (predictions)
#> i Slice2: recipe
#> v Slice2: recipe
#> i Slice2: model 1/6
#> v Slice2: model 1/6
#> i Slice2: model 1/6 (predictions)
#> i Slice2: model 2/6
#> v Slice2: model 2/6
#> i Slice2: model 2/6 (predictions)
#> i Slice2: model 3/6
#> v Slice2: model 3/6
#> i Slice2: model 3/6 (predictions)
#> i Slice2: model 4/6
#> v Slice2: model 4/6
#> i Slice2: model 4/6 (predictions)
#> i Slice2: model 5/6
#> v Slice2: model 5/6
#> i Slice2: model 5/6 (predictions)
#> i Slice2: model 6/6
#> v Slice2: model 6/6
#> i Slice2: model 6/6 (predictions)
#> i Slice3: recipe
#> v Slice3: recipe
#> i Slice3: model 1/6
#> v Slice3: model 1/6
#> i Slice3: model 1/6 (predictions)
#> i Slice3: model 2/6
#> v Slice3: model 2/6
#> i Slice3: model 2/6 (predictions)
#> i Slice3: model 3/6
#> v Slice3: model 3/6
#> i Slice3: model 3/6 (predictions)
#> i Slice3: model 4/6
#> v Slice3: model 4/6
#> i Slice3: model 4/6 (predictions)
#> i Slice3: model 5/6
#> v Slice3: model 5/6
#> i Slice3: model 5/6 (predictions)
#> i Slice3: model 6/6
#> v Slice3: model 6/6
#> i Slice3: model 6/6 (predictions)
#> i Slice4: recipe
#> v Slice4: recipe
#> i Slice4: model 1/6
#> v Slice4: model 1/6
#> i Slice4: model 1/6 (predictions)
#> i Slice4: model 2/6
#> v Slice4: model 2/6
#> i Slice4: model 2/6 (predictions)
#> i Slice4: model 3/6
#> v Slice4: model 3/6
#> i Slice4: model 3/6 (predictions)
#> i Slice4: model 4/6
#> v Slice4: model 4/6
#> i Slice4: model 4/6 (predictions)
#> i Slice4: model 5/6
#> v Slice4: model 5/6
#> i Slice4: model 5/6 (predictions)
#> i Slice4: model 6/6
#> v Slice4: model 6/6
#> i Slice4: model 6/6 (predictions)
#> i Slice5: recipe
#> v Slice5: recipe
#> i Slice5: model 1/6
#> v Slice5: model 1/6
#> i Slice5: model 1/6 (predictions)
#> i Slice5: model 2/6
#> v Slice5: model 2/6
#> i Slice5: model 2/6 (predictions)
#> i Slice5: model 3/6
#> v Slice5: model 3/6
#> i Slice5: model 3/6 (predictions)
#> i Slice5: model 4/6
#> v Slice5: model 4/6
#> i Slice5: model 4/6 (predictions)
#> i Slice5: model 5/6
#> v Slice5: model 5/6
#> i Slice5: model 5/6 (predictions)
#> i Slice5: model 6/6
#> v Slice5: model 6/6
#> i Slice5: model 6/6 (predictions)
#> i Slice6: recipe
#> v Slice6: recipe
#> i Slice6: model 1/6
#> v Slice6: model 1/6
#> i Slice6: model 1/6 (predictions)
#> i Slice6: model 2/6
#> v Slice6: model 2/6
#> i Slice6: model 2/6 (predictions)
#> i Slice6: model 3/6
#> v Slice6: model 3/6
#> i Slice6: model 3/6 (predictions)
#> i Slice6: model 4/6
#> v Slice6: model 4/6
#> i Slice6: model 4/6 (predictions)
#> i Slice6: model 5/6
#> v Slice6: model 5/6
#> i Slice6: model 5/6 (predictions)
#> i Slice6: model 6/6
#> v Slice6: model 6/6
#> i Slice6: model 6/6 (predictions)
#> i Slice7: recipe
#> v Slice7: recipe
#> i Slice7: model 1/6
#> v Slice7: model 1/6
#> i Slice7: model 1/6 (predictions)
#> i Slice7: model 2/6
#> v Slice7: model 2/6
#> i Slice7: model 2/6 (predictions)
#> i Slice7: model 3/6
#> v Slice7: model 3/6
#> i Slice7: model 3/6 (predictions)
#> i Slice7: model 4/6
#> v Slice7: model 4/6
#> i Slice7: model 4/6 (predictions)
#> i Slice7: model 5/6
#> v Slice7: model 5/6
#> i Slice7: model 5/6 (predictions)
#> i Slice7: model 6/6
#> v Slice7: model 6/6
#> i Slice7: model 6/6 (predictions)
#> i Slice8: recipe
#> v Slice8: recipe
#> i Slice8: model 1/6
#> v Slice8: model 1/6
#> i Slice8: model 1/6 (predictions)
#> i Slice8: model 2/6
#> v Slice8: model 2/6
#> i Slice8: model 2/6 (predictions)
#> i Slice8: model 3/6
#> v Slice8: model 3/6
#> i Slice8: model 3/6 (predictions)
#> i Slice8: model 4/6
#> v Slice8: model 4/6
#> i Slice8: model 4/6 (predictions)
#> i Slice8: model 5/6
#> v Slice8: model 5/6
#> i Slice8: model 5/6 (predictions)
#> i Slice8: model 6/6
#> v Slice8: model 6/6
#> i Slice8: model 6/6 (predictions)
# this works fine, but in parralel processing....


# parallel processing... 

parallel::detectCores(logical = FALSE)
#> [1] 4
# = 4 cores on my computer

registerDoParallel(makeCluster(4))

# run `tune_grid()`...
glmn_tune <-
  tune::tune_grid(
    glmn_rec,
    model = glmn_mod,
    resamples = chi_folds,
    grid = glmn_grid,
    control = ctrl
  )
#> Warning: All models failed in tune_grid(). See the `.notes` column.

glmn_tune$.notes[[1]]
#> # A tibble: 1 x 1
#>   .notes                                                                   
#>   <chr>                                                                    
#> 1 "recipe: Error in all_nominal(): could not find function \"all_nominal\""

Created on 2020-01-28 by the reprex package (v0.3.0)

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions