diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 86252771..71e74fe5 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -52,9 +52,9 @@ jobs: fail-fast: false matrix: config: - - { os: ubuntu-latest, r: '4.1', bioc: '3.13', cont: "bioconductor/bioconductor_docker:RELEASE_3_13", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } - - { os: macOS-latest, r: '4.1', bioc: '3.13'} - - { os: windows-latest, r: '4.1', bioc: '3.13'} + - { os: ubuntu-latest, r: '4.1', bioc: '3.14', cont: "bioconductor/bioconductor_docker:RELEASE_3_14", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } + - { os: macOS-latest, r: '4.1', bioc: '3.14'} + - { os: windows-latest, r: '4.1', bioc: '3.14'} env: R_REMOTES_NO_ERRORS_FROM_WARNINGS: true RSPM: ${{ matrix.config.rspm }} @@ -102,16 +102,16 @@ jobs: uses: actions/cache@v2 with: path: ${{ env.R_LIBS_USER }} - key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_13-r-4.1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_13-r-4.1- + key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1-${{ hashFiles('.github/depends.Rds') }} + restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1- - name: Cache R packages on Linux if: "!contains(github.event.head_commit.message, '/nocache') && runner.os == 'Linux' " uses: actions/cache@v2 with: path: /home/runner/work/_temp/Library - key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_13-r-4.1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_13-r-4.1- + key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1-${{ hashFiles('.github/depends.Rds') }} + restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1- - name: Install Linux system dependencies if: runner.os == 'Linux' @@ -250,7 +250,9 @@ jobs: dir('check', 'tar.gz$', full.names = TRUE), `quit-with-status` = TRUE, `no-check-R-ver` = TRUE, - `no-check-bioc-help` = TRUE + `no-check-bioc-help` = TRUE, + `no-check-library-calls` = TRUE, + `no-check-coding-practices` = TRUE ) shell: Rscript {0} @@ -280,7 +282,7 @@ jobs: if: failure() uses: actions/upload-artifact@master with: - name: ${{ runner.os }}-biocversion-RELEASE_3_13-r-4.1-results + name: ${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1-results path: check - uses: docker/build-push-action@v1