Skip to content

error upgrading dplyr under R 4.2.1 #927

@splaisan

Description

@splaisan

Thanks for any suggestion to fix this.
Stephane

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
> install()
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
Old packages: 'dbplyr'
Update all/some/none? [a/s/n]: 
a
trying URL 'https://cloud.r-project.org/src/contrib/dbplyr_2.2.1.tar.gz'
Content type 'application/x-gzip' length 670569 bytes (654 KB)
==================================================
downloaded 654 KB

* installing *source* package ‘dbplyr’ ...
** package ‘dbplyr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in setOldClass(c("src_dbi", "src_sql", "src")) : 
  could not find function "setOldClass"
Error: unable to load R code in package ‘dbplyr’
Execution halted
ERROR: lazy loading failed for package ‘dbplyr’
* removing ‘/opt/R_LIBS/dbplyr’
* restoring previous ‘/opt/R_LIBS/dbplyr’

The downloaded source packages are in
	‘/opt/R_LIBS/tmp/RtmpRRrZuF/downloaded_packages’
Warning message:
In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl,  :
  installation of package ‘dbplyr’ had non-zero exit status

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions