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Thanks for any suggestion to fix this.
Stephane
Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
> install()
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories:
CRAN: https://cloud.r-project.org
Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
Old packages: 'dbplyr'
Update all/some/none? [a/s/n]:
a
trying URL 'https://cloud.r-project.org/src/contrib/dbplyr_2.2.1.tar.gz'
Content type 'application/x-gzip' length 670569 bytes (654 KB)
==================================================
downloaded 654 KB
* installing *source* package ‘dbplyr’ ...
** package ‘dbplyr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in setOldClass(c("src_dbi", "src_sql", "src")) :
could not find function "setOldClass"
Error: unable to load R code in package ‘dbplyr’
Execution halted
ERROR: lazy loading failed for package ‘dbplyr’
* removing ‘/opt/R_LIBS/dbplyr’
* restoring previous ‘/opt/R_LIBS/dbplyr’
The downloaded source packages are in
‘/opt/R_LIBS/tmp/RtmpRRrZuF/downloaded_packages’
Warning message:
In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, :
installation of package ‘dbplyr’ had non-zero exit status
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