Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

error upgrading dplyr under R 4.2.1 #927

Closed
splaisan opened this issue Jun 29, 2022 · 0 comments · Fixed by #944
Closed

error upgrading dplyr under R 4.2.1 #927

splaisan opened this issue Jun 29, 2022 · 0 comments · Fixed by #944

Comments

@splaisan
Copy link

Thanks for any suggestion to fix this.
Stephane

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
> install()
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
Old packages: 'dbplyr'
Update all/some/none? [a/s/n]: 
a
trying URL 'https://cloud.r-project.org/src/contrib/dbplyr_2.2.1.tar.gz'
Content type 'application/x-gzip' length 670569 bytes (654 KB)
==================================================
downloaded 654 KB

* installing *source* package ‘dbplyr’ ...
** package ‘dbplyr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in setOldClass(c("src_dbi", "src_sql", "src")) : 
  could not find function "setOldClass"
Error: unable to load R code in package ‘dbplyr’
Execution halted
ERROR: lazy loading failed for package ‘dbplyr’
* removing ‘/opt/R_LIBS/dbplyr’
* restoring previous ‘/opt/R_LIBS/dbplyr’

The downloaded source packages are in
	‘/opt/R_LIBS/tmp/RtmpRRrZuF/downloaded_packages’
Warning message:
In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl,  :
  installation of package ‘dbplyr’ had non-zero exit status
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant