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An old issue reporting this was closed, but the behaviour is still problematic.
p <- qplot(1:10,1:10, geom="blank") + scale_x_continuous(breaks=1:10)
g <- rectGrob(gp=gpar(fill="grey"))
p + annotation_custom(g, xmin=1, xmax=2) +
annotation_custom(g, xmin=3, xmax=4) + # won't show up
annotation_custom(editGrob(g, name="new"), xmin=5, xmax=6)
I suspect it's a gtable bug, but not sure where exactly
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