diff --git a/revdep/README.md b/revdep/README.md
index ca67010418..7853361ea0 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,370 +1,105 @@
# Revdeps
-## Failed to check (31)
+## Failed to check (74)
|package |version |error |warning |note |
|:--------------------|:-------|:------|:-------|:----|
-|[bartMan](failures.md#bartman)|0.1.1 |__+1__ | | |
|bayesdfa |1.3.4 |1 | | |
-|[cocktailApp](failures.md#cocktailapp)|0.2.3 |__+1__ | |-1 |
-|[coda.plot](failures.md#codaplot)|0.1.9 |__+1__ | | |
+|[bmgarch](failures.md#bmgarch)|2.0.0 |__+1__ | |-3 |
+|cdcatR |? | | | |
+|cdmTools |? | | | |
+|cinaR |? | | | |
+|ClusterGVis |? | | | |
+|cocktailApp |0.2.3 |1 | | |
+|counterfactuals |? | | | |
|cry |? | | | |
-|ctsem |3.10.3 |1 | |1 |
+|ctsem |3.10.4 |1 | |1 |
+|dbrobust |? | | | |
+|degradr |? | | | |
+|DFD |? | | | |
+|dymo |? | | | |
|EcoEnsemble |1.1.2 |1 | | |
+|EGAnet |? | | | |
|fio |0.1.6 |1 | | |
-|[GGally](failures.md#ggally)|2.2.1 |__+1__ | | |
-|[ggmosaic](failures.md#ggmosaic)|0.3.3 |__+1__ | |-1 |
-|[ggmulti](failures.md#ggmulti)|1.0.7 |__+1__ | | |
-|ggRandomForests |2.2.1 |1 | | |
-|[ggtern](failures.md#ggtern)|3.5.0 |__+1__ | |1 -1 |
-|metabolic |? | | | |
+|GDINA |? | | | |
+|genekitr |? | | | |
+|GeneSelectR |? | | | |
+|ggmosaic |0.3.3 |1 | | |
+|ggpicrust2 |? | | | |
+|ggsem |? | | | |
+|ggtern |3.5.0 |1 | |1 |
+|grandR |? | | | |
+|groupedHyperframe |? | | | |
+|immcp |? | | | |
+|jmv |? | | | |
+|latentFactoR |? | | | |
+|lcsm |? | | | |
+|manymome |? | | | |
+|ModStatR |? | | | |
|multinma |0.8.1 |1 | | |
-|[MultiTraits](failures.md#multitraits)|0.5.0 |__+1__ | | |
+|neatStats |? | | | |
+|negligible |? | | | |
+|numbat |? | | | |
+|OlinkAnalyze |? | | | |
|OpenMx |? | | | |
-|pacta.loanbook |0.1.0 |1 | | |
-|[PieGlyph](failures.md#pieglyph)|1.0.0 |__+1__ | | |
+|parameters |? | | | |
+|pctax |? | | | |
+|phylosem |? | | | |
+|predictionInterval |? | | | |
+|psychonetrics |? | | | |
+|psycModel |? | | | |
+|pubh |? | | | |
+|rattle |? | | | |
+|ReporterScore |? | | | |
+|Revticulate |? | | | |
|rmsb |1.1-2 |1 | | |
+|Rnest |? | | | |
+|rosetta |? | | | |
+|rSDR |? | | | |
|rshift |3.1.2 |1 | | |
-|RSP |0.4 |1 | | |
-|rstanarm |2.32.1 |1 | | |
-|[scplot](failures.md#scplot)|0.5.1 |__+1__ | | |
+|rstanarm |2.32.2 |1 | | |
+|RVA |? | | | |
+|SCpubr |? | | | |
+|semtree |? | | | |
+|sprtt |? | | | |
|StatTeacherAssistant |? | | | |
+|stelfi |? | | | |
|streamDAG |? | | | |
-|TestAnaAPP |1.1.2 |1 | | |
-|[tidydr](failures.md#tidydr)|0.0.5 |__+1__ | | |
-|[tricolore](failures.md#tricolore)|1.2.4 |__+1__ | |-1 |
-|TriDimRegression |1.0.2 |1 | | |
-|[xpose](failures.md#xpose)|0.4.19 |__+1__ | | |
+|SurprisalAnalysis |? | | | |
+|Surrogate |? | | | |
+|tabledown |? | | | |
+|TELP |? | | | |
+|TestAnaAPP |? | | | |
+|tidybins |? | | | |
+|tidycomm |? | | | |
+|tidySEM |? | | | |
+|tinyarray |? | | | |
+|TransProR |? | | | |
+|tricolore |1.2.4 |1 | | |
+|TriDimRegression |1.0.3 |1 | | |
+|ufs |? | | | |
-## New problems (327)
+## New problems (19)
-|package |version |error |warning |note |
-|:---------------------|:---------|:--------|:--------|:------|
-|[adklakedata](problems.md#adklakedata)|0.6.1 |__+1__ | |1 |
-|[adsoRptionCMF](problems.md#adsorptioncmf)|0.1.0 |__+1__ | | |
-|[adw](problems.md#adw)|0.4.0 |__+2__ | | |
-|[afex](problems.md#afex)|1.4-1 |__+1__ | | |
-|[AgroR](problems.md#agror)|1.3.6 |__+1__ | | |
-|[AgroReg](problems.md#agroreg)|1.2.10 |__+1__ | | |
-|[alookr](problems.md#alookr)|0.3.9 |__+1__ | | |
-|[AnalysisLin](problems.md#analysislin)|0.1.2 |__+1__ | | |
-|[andurinha](problems.md#andurinha)|0.0.2 |__+1__ | | |
-|[animbook](problems.md#animbook)|1.0.0 |__+1__ | | |
-|[ANN2](problems.md#ann2)|2.3.4 |__+1__ | |3 |
-|[APackOfTheClones](problems.md#apackoftheclones)|1.2.4 |__+3__ |1 |1 |
-|[applicable](problems.md#applicable)|0.1.1 |__+1__ | | |
-|[arena2r](problems.md#arena2r)|1.0.0 |__+1__ | |1 |
-|[ASRgenomics](problems.md#asrgenomics)|1.1.4 |__+1__ | |1 |
-|[assignPOP](problems.md#assignpop)|1.3.0 |__+1__ | | |
-|[autocogs](problems.md#autocogs)|0.1.4 |__+1__ | |1 |
-|[autoplotly](problems.md#autoplotly)|0.1.4 |__+1__ | | |
-|[bayesAB](problems.md#bayesab)|1.1.3 |__+1__ | |1 |
-|[bayesassurance](problems.md#bayesassurance)|0.1.0 |__+1__ | | |
-|[BayesCVI](problems.md#bayescvi)|1.0.1 | |__+1__ | |
-|[BayesianReasoning](problems.md#bayesianreasoning)|0.4.2 |__+1__ | | |
-|[BayesMultiMode](problems.md#bayesmultimode)|0.7.3 | |__+1__ |1 |
-|[BCEA](problems.md#bcea)|2.4.7 |__+1__ | | |
-|[bdsm](problems.md#bdsm)|0.2.1 |__+1__ |1 | |
-|[BeeBDC](problems.md#beebdc)|1.2.1 |__+1__ | |1 |
-|[benchr](problems.md#benchr)|0.2.5 |__+1__ | |2 |
-|[biclustermd](problems.md#biclustermd)|0.2.3 |__+1__ | |1 |
-|[biometryassist](problems.md#biometryassist)|1.3.0 |__+1__ | |2 |
-|[BiVariAn](problems.md#bivarian)|1.0.1 |__+2__ | | |
-|[brolgar](problems.md#brolgar)|1.0.1 |__+2__ | | |
-|[bullseye](problems.md#bullseye)|1.0.0 |__+2__ | | |
-|[calmr](problems.md#calmr)|0.7.0 |__+1__ | | |
-|[canvasXpress](problems.md#canvasxpress)|1.56.1 |__+1__ | | |
-|[carbonr](problems.md#carbonr)|0.2.1 |__+1__ | |2 |
-|[caretEnsemble](problems.md#caretensemble)|4.0.1 | | |__+1__ |
-|[cartographr](problems.md#cartographr)|0.2.2 |__+1__ | |1 |
-|[causact](problems.md#causact)|0.5.7 |__+1__ | | |
-|[CausalImpact](problems.md#causalimpact)|1.3.0 |__+1__ | | |
-|[centerline](problems.md#centerline)|0.2.2 |__+2__ | | |
-|[Certara.Xpose.NLME](problems.md#certaraxposenlme)|2.0.2 |__+1__ | | |
-|[cheem](problems.md#cheem)|0.4.0.0 |__+1__ | | |
-|[circumplex](problems.md#circumplex)|1.0.0 |__+1__ | | |
-|[clifro](problems.md#clifro)|3.2-5 |__+1__ | |1 |
-|[climwin](problems.md#climwin)|1.2.31 |__+1__ | | |
-|[clockSim](problems.md#clocksim)|0.1.2 | |__+1__ | |
-|[cmcR](problems.md#cmcr)|0.1.11 |__+1__ | |1 |
-|[cnmap](problems.md#cnmap)|0.1.0 |__+2__ | | |
-|[conquestr](problems.md#conquestr)|1.5.1 |__+1__ | | |
-|[constructive](problems.md#constructive)|1.1.0 |__+1__ | | |
-|[CoSMoS](problems.md#cosmos)|2.1.0 |__+1__ | | |
-|[countfitteR](problems.md#countfitter)|1.4 |__+1__ | |1 |
-|[covidcast](problems.md#covidcast)|0.5.2 |__+2__ | |1 |
-|[cowplot](problems.md#cowplot)|1.1.3 |__+1__ | | |
-|[ctrialsgov](problems.md#ctrialsgov)|0.2.5 |__+1__ | |1 |
-|[cvms](problems.md#cvms)|1.7.0 |__+1__ | | |
-|[cylcop](problems.md#cylcop)|0.2.0 |__+1__ | |1 |
-|[D2MCS](problems.md#d2mcs)|1.0.1 |__+1__ | | |
-|[dabestr](problems.md#dabestr)|2025.3.14 |__+1__ | | |
-|[daiquiri](problems.md#daiquiri)|1.1.1 |__+2__ | | |
-|[DAISIEprep](problems.md#daisieprep)|1.0.0 |__+1__ | | |
-|[dams](problems.md#dams)|0.3.0 |__+1__ | |1 |
-|[Deducer](problems.md#deducer)|0.9-0 | |__+1__ | |
-|[dendextend](problems.md#dendextend)|1.19.0 |__+1__ | |3 |
-|[DImodelsVis](problems.md#dimodelsvis)|1.0.1 |__+2__ | | |
-|[directlabels](problems.md#directlabels)|2025.5.20 |__+1__ | | |
-|[DiSCos](problems.md#discos)|0.1.1 |__+1__ | | |
-|[distributions3](problems.md#distributions3)|0.2.2 |__+1__ | | |
-|[dittoViz](problems.md#dittoviz)|1.0.3 |__+2__ | | |
-|[duke](problems.md#duke)|0.0.3 |__+2__ | | |
-|[easyalluvial](problems.md#easyalluvial)|0.3.2 |__+1__ | | |
-|[easysurv](problems.md#easysurv)|2.0.1 |__+2__ | | |
-|[ecocbo](problems.md#ecocbo)|0.12.0 |__+1__ | | |
-|[EGM](problems.md#egm)|0.1.0 |__+1__ | | |
-|[eks](problems.md#eks)|1.1.0 | |__+1__ | |
-|[ENMTools](problems.md#enmtools)|1.1.2 |__+1__ | | |
-|[epos](problems.md#epos)|1.1 |__+1__ | |2 |
-|[EQUALSTATS](problems.md#equalstats)|0.5.0 |__+1__ | |1 |
-|[equatiomatic](problems.md#equatiomatic)|0.3.6 |__+1__ | | |
-|[errors](problems.md#errors)|0.4.3 |__+2__ |-1 | |
-|[eventstudyr](problems.md#eventstudyr)|1.1.3 |__+1__ | | |
-|[ez](problems.md#ez) |4.4-0 |__+1__ | |1 |
-|[ezEDA](problems.md#ezeda)|0.1.1 |__+1__ | | |
-|[ezplot](problems.md#ezplot)|0.7.13 |__+3__ | | |
-|[fabletools](problems.md#fabletools)|0.5.0 |__+1__ | | |
-|[fairmodels](problems.md#fairmodels)|1.2.1 |__+3__ | |1 |
-|[fairness](problems.md#fairness)|1.2.2 | |__+1__ | |
-|[faux](problems.md#faux)|1.2.2 |__+2__ | | |
-|[feasts](problems.md#feasts)|0.4.1 |__+1__ | | |
-|[fec16](problems.md#fec16)|0.1.4 |__+1__ | |1 |
-|[flextable](problems.md#flextable)|0.9.9 |__+1__ | | |
-|[fmf](problems.md#fmf)|1.1.1 | |__+1__ |1 |
-|[forestPSD](problems.md#forestpsd)|1.0.0 |__+1__ | |1 |
-|[FunnelPlotR](problems.md#funnelplotr)|0.5.0 |__+3__ | | |
-|[gapfill](problems.md#gapfill)|0.9.6-1 |__+1__ | |2 |
-|[genekitr](problems.md#genekitr)|1.2.8 |__+1__ | | |
-|[geneSLOPE](problems.md#geneslope)|0.38.3 | |__+1__ | |
-|[geofacet](problems.md#geofacet)|0.2.1 | |__+1__ |1 |
-|[geomtextpath](problems.md#geomtextpath)|0.1.5 |__+2__ | | |
-|[gfoRmulaICE](problems.md#gformulaice)|0.1.0 |__+1__ | | |
-|[gg1d](problems.md#gg1d)|0.1.0 |__+2__ | | |
-|[ggalign](problems.md#ggalign)|1.0.2 |__+2__ |__+3__ |1 -1 |
-|[ggblend](problems.md#ggblend)|0.1.0 |__+1__ | | |
-|[ggborderline](problems.md#ggborderline)|0.2.0 |__+1__ | | |
-|[ggbrain](problems.md#ggbrain)|0.9.0 | |__+1__ |1 |
-|[ggbreak](problems.md#ggbreak)|0.1.4 |__+1__ |__+1__ | |
-|[ggbump](problems.md#ggbump)|0.1.0 |__+1__ | |1 |
-|[ggdark](problems.md#ggdark)|0.2.1 |__+2__ | |1 |
-|[ggdemetra](problems.md#ggdemetra)|0.2.8 | |__+1__ | |
-|[ggDoubleHeat](problems.md#ggdoubleheat)|0.1.2 |__+1__ | | |
-|[ggEDA](problems.md#ggeda)|0.1.0 |__+2__ | | |
-|[ggedit](problems.md#ggedit)|0.4.1 |__+1__ | | |
-|[ggfixest](problems.md#ggfixest)|0.3.0 |__+1__ | | |
-|[ggfocus](problems.md#ggfocus)|1.0.0 |__+1__ |__+1__ |1 |
-|[ggformula](problems.md#ggformula)|0.12.0 | |__+1__ |1 |
-|[ggfortify](problems.md#ggfortify)|0.4.17 |__+1__ | | |
-|[ggfx](problems.md#ggfx)|1.0.1 | |__+1__ |1 |
-|[gggenomes](problems.md#gggenomes)|1.0.1 |__+2__ | | |
-|[ggghost](problems.md#ggghost)|0.2.2 |__+1__ | | |
-|[gghalves](problems.md#gghalves)|0.1.4 |__+2__ | |1 |
-|[ggimage](problems.md#ggimage)|0.3.3 | |__+1__ | |
-|[ggiraph](problems.md#ggiraph)|0.8.13 |__+2__ | |1 |
-|[ggiraphExtra](problems.md#ggiraphextra)|0.3.0 |__+2__ | | |
-|[ggmap](problems.md#ggmap)|4.0.1 | |__+1__ |1 |
-|[ggpackets](problems.md#ggpackets)|0.2.1 |__+2__ |__+1__ | |
-|[ggparallel](problems.md#ggparallel)|0.4.0 |__+1__ | | |
-|[ggpath](problems.md#ggpath)|1.0.2 |__+1__ | | |
-|[ggplot2.utils](problems.md#ggplot2utils)|0.3.2 |__+1__ | | |
-|[ggPMX](problems.md#ggpmx)|1.2.11 |__+1__ | |2 |
-|[ggpol](problems.md#ggpol)|0.0.7 |__+1__ | |2 |
-|[ggprism](problems.md#ggprism)|1.0.6 |__+3__ | | |
-|[ggpubr](problems.md#ggpubr)|0.6.0 |__+1__ | | |
-|[ggraph](problems.md#ggraph)|2.2.1 |__+2__ |__+1__ |1 |
-|[ggResidpanel](problems.md#ggresidpanel)|0.3.0 |__+3__ | | |
-|[ggRtsy](problems.md#ggrtsy)|0.1.0 |__+2__ | |1 |
-|[ggseqplot](problems.md#ggseqplot)|0.8.6 |__+3__ | | |
-|[ggside](problems.md#ggside)|0.3.1 |__+3__ |__+2__ |__+1__ |
-|[ggspatial](problems.md#ggspatial)|1.1.9 | |__+1__ | |
-|[ggstatsplot](problems.md#ggstatsplot)|0.13.1 |__+1__ | | |
-|[ggstream](problems.md#ggstream)|0.1.0 |__+1__ | |1 |
-|[ggswissmaps](problems.md#ggswissmaps)|0.1.1 | |__+1__ |__+1__ |
-|[ggtangle](problems.md#ggtangle)|0.0.6 |__+1__ |__+1__ | |
-|[ggtime](problems.md#ggtime)|0.1.0 |__+1__ | | |
-|[ggVennDiagram](problems.md#ggvenndiagram)|1.5.4 |__+1__ | |1 |
-|[ggview](problems.md#ggview)|0.2.1 | |__+1__ | |
-|[grafify](problems.md#grafify)|5.0.0.1 |__+1__ | |2 |
-|[graphPAF](problems.md#graphpaf)|2.0.0 |__+1__ | | |
-|[GRShiny](problems.md#grshiny)|1.0.0 |__+1__ | |1 |
-|[grwat](problems.md#grwat)|0.0.4 |__+1__ | |1 |
-|[gtExtras](problems.md#gtextras)|0.6.0 |__+1__ | | |
-|[handwriterRF](problems.md#handwriterrf)|1.1.1 |__+1__ | | |
-|[harmony](problems.md#harmony)|1.2.3 |__+1__ | |1 |
-|[hatchR](problems.md#hatchr)|0.3.2 |__+1__ | |1 |
-|[heatmaply](problems.md#heatmaply)|1.5.0 |__+1__ | |2 |
-|[hesim](problems.md#hesim)|0.5.5 |__+1__ | |1 |
-|[hrbrthemes](problems.md#hrbrthemes)|0.8.7 |__+1__ | | |
-|[hyperoverlap](problems.md#hyperoverlap)|1.1.1 | |__+1__ |1 |
-|[hypsoLoop](problems.md#hypsoloop)|0.2.0 | |__+1__ | |
-|[ImHD](problems.md#imhd)|0.1.0 | |__+1__ | |
-|[implicitMeasures](problems.md#implicitmeasures)|0.2.1 |__+2__ | | |
-|[imputeTS](problems.md#imputets)|3.3 |__+1__ |1 |1 |
-|[infer](problems.md#infer)|1.0.8 |__+1__ |__+1__ | |
-|[inTextSummaryTable](problems.md#intextsummarytable)|3.3.3 |__+2__ | |1 |
-|[iNZightTS](problems.md#inzightts)|2.0.0 |__+1__ | |1 |
-|[IRon](problems.md#iron)|0.1.4 |__+1__ | |1 |
-|[isoorbi](problems.md#isoorbi)|1.3.1 |__+1__ | |1 |
-|[jskm](problems.md#jskm)|0.5.13 |__+1__ | | |
-|[lares](problems.md#lares)|5.2.13 |__+1__ | | |
-|[latrend](problems.md#latrend)|1.6.1 |__+2__ | | |
-|[legendry](problems.md#legendry)|0.2.2 | |__+3__ |__+2__ |
-|[lemon](problems.md#lemon)|0.5.0 |__+3__ |__+1__ | |
-|[lfproQC](problems.md#lfproqc)|1.4.0 |__+2__ | | |
-|[lgpr](problems.md#lgpr)|1.2.4 |__+1__ | |3 |
-|[listdown](problems.md#listdown)|0.5.7 |__+2__ | |2 |
-|[LMD](problems.md#lmd)|1.0.0 |__+2__ | | |
-|[longevity](problems.md#longevity)|1.2 |__+2__ | |1 |
-|[ltertools](problems.md#ltertools)|2.0.0 |__+1__ | | |
-|[manymodelr](problems.md#manymodelr)|0.3.9 | |__+1__ | |
-|[manynet](problems.md#manynet)|1.3.2 |__+2__ | |3 |
-|[marquee](problems.md#marquee)|1.0.0 |__+1__ | |1 |
-|[MaxWiK](problems.md#maxwik)|1.0.5 |__+1__ | | |
-|[mcStats](problems.md#mcstats)|0.1.2 |__+1__ | |1 |
-|[meme](problems.md#meme)|0.2.3 |__+1__ | | |
-|[metagam](problems.md#metagam)|0.4.0 |__+1__ | | |
-|[MetaNet](problems.md#metanet)|0.2.5 |__+1__ | | |
-|[metR](problems.md#metr)|0.18.1 |__+3__ | |1 |
-|[mgcViz](problems.md#mgcviz)|0.2.0 |__+1__ | | |
-|[MIC](problems.md#mic)|1.1.0 |__+1__ | | |
-|[mikropml](problems.md#mikropml)|1.6.1 |__+1__ | |1 |
-|[MiMIR](problems.md#mimir)|1.5 |__+1__ | | |
-|[miRetrieve](problems.md#miretrieve)|1.3.4 |__+1__ | | |
-|[MiscMetabar](problems.md#miscmetabar)|0.14.3 |__+3__ | |1 |
-|[mistral](problems.md#mistral)|2.2.2 | |__+1__ | |
-|[misty](problems.md#misty)|0.7.2 |__+1__ | |1 |
-|[MKpower](problems.md#mkpower)|1.0 |__+1__ | | |
-|[modeldb](problems.md#modeldb)|0.3.0 |__+1__ | | |
-|[Momocs](problems.md#momocs)|1.4.1 |__+1__ | | |
-|[mpactr](problems.md#mpactr)|0.2.1 |__+1__ | |1 |
-|[mshap](problems.md#mshap)|0.1.0 |__+1__ | |1 |
-|[mtdesign](problems.md#mtdesign)|0.1.2 |__+1__ | | |
-|[mverse](problems.md#mverse)|0.2.2 |__+1__ | |1 |
-|[mxnorm](problems.md#mxnorm)|1.0.3 |__+1__ | |1 |
-|[NHSRplotthedots](problems.md#nhsrplotthedots)|0.1.0 |__+1__ | |1 |
-|[nlmixr2plot](problems.md#nlmixr2plot)|3.0.1 |__+1__ | | |
-|[normfluodbf](problems.md#normfluodbf)|2.0.0 |__+1__ | | |
-|[nzelect](problems.md#nzelect)|0.4.0 |__+1__ | |2 |
-|[ofpetrial](problems.md#ofpetrial)|0.1.2 |__+1__ | | |
-|[ogrdbstats](problems.md#ogrdbstats)|0.5.2 |__+2__ | | |
-|[OmicNavigator](problems.md#omicnavigator)|1.15.0 |__+1__ |1 | |
-|[ordinalsimr](problems.md#ordinalsimr)|0.2.1 |__+1__ | | |
-|[ordr](problems.md#ordr)|0.1.1 |__+3__ | |2 |
-|[pafr](problems.md#pafr)|0.0.2 |__+1__ |__+1__ |1 |
-|[palettes](problems.md#palettes)|0.2.1 |__+2__ | | |
-|[patchwork](problems.md#patchwork)|1.3.1 | |__+1__ | |
-|[patientProfilesVis](problems.md#patientprofilesvis)|2.0.9 |1 __+1__ | |1 |
-|[pcr](problems.md#pcr)|1.2.2 |__+1__ | | |
-|[phylepic](problems.md#phylepic)|0.2.0 | |__+1__ | |
-|[plantTracker](problems.md#planttracker)|1.1.0 |__+1__ | | |
-|[plotdap](problems.md#plotdap)|1.0.3 |__+2__ | | |
-|[plotDK](problems.md#plotdk)|0.1.0 |__+1__ | |2 |
-|[PlotFTIR](problems.md#plotftir)|1.2.0 |__+1__ | | |
-|[plotor](problems.md#plotor)|0.6.0 |__+3__ | | |
-|[plotROC](problems.md#plotroc)|2.3.1 |__+3__ | | |
-|[plotthis](problems.md#plotthis)|0.7.1 |__+1__ | |1 |
-|[pmxTools](problems.md#pmxtools)|1.3 |__+1__ | |2 |
-|[pollster](problems.md#pollster)|0.1.6 |__+1__ | | |
-|[PoweREST](problems.md#powerest)|0.1.0 |__+1__ | | |
-|[precintcon](problems.md#precintcon)|2.3.0 |__+1__ | | |
-|[predint](problems.md#predint)|2.2.1 |__+1__ | | |
-|[PredPsych](problems.md#predpsych)|0.4 | |__+1__ | |
-|[predRupdate](problems.md#predrupdate)|0.2.0 |__+1__ | | |
-|[priorsense](problems.md#priorsense)|1.1.0 |__+1__ | | |
-|[probably](problems.md#probably)|1.1.0 |__+1__ | | |
-|[psborrow](problems.md#psborrow)|0.2.2 |__+1__ |__+1__ | |
-|[psc](problems.md#psc)|1.3.0 |__+1__ | | |
-|[pscore](problems.md#pscore)|0.4.0 | |__+1__ | |
-|[pubh](problems.md#pubh)|2.0.0 |__+1__ | | |
-|[qad](problems.md#qad)|1.0.4 |__+1__ | |1 |
-|[qdap](problems.md#qdap)|2.4.6 |__+1__ | |3 |
-|[qgcompint](problems.md#qgcompint)|1.0.0 |__+1__ | | |
-|[quantities](problems.md#quantities)|0.2.3 |__+1__ | | |
-|[quickPlot](problems.md#quickplot)|1.0.2 |__+2__ | |1 |
-|[quickReg](problems.md#quickreg)|1.5.0 |__+1__ | |3 |
-|[Radviz](problems.md#radviz)|0.9.4 |__+2__ | |1 |
-|[RamanMP](problems.md#ramanmp)|1.0 |__+1__ | |1 |
-|[randomForestExplainer](problems.md#randomforestexplainer)|0.10.1 |__+3__ | |1 |
-|[rasterdiv](problems.md#rasterdiv)|0.3.6 |__+1__ | | |
-|[rater](problems.md#rater)|1.3.1 |__+1__ | |3 |
-|[ratlas](problems.md#ratlas)|0.1.0 |__+2__ | |1 |
-|[rbioacc](problems.md#rbioacc)|1.2.1 |__+1__ | |2 |
-|[rbiom](problems.md#rbiom)|2.2.0 |__+1__ | | |
-|[reda](problems.md#reda)|0.5.5 |__+1__ | |1 |
-|[regtomean](problems.md#regtomean)|1.2 | |__+1__ |1 |
-|[rempsyc](problems.md#rempsyc)|0.1.9 |__+3__ | | |
-|[rmweather](problems.md#rmweather)|0.2.62 |__+1__ | | |
-|[robCompositions](problems.md#robcompositions)|2.4.1 | |1 __+1__ |3 |
-|[rrr](problems.md#rrr)|1.0.0 |__+2__ | |1 |
-|[RSDA](problems.md#rsda)|3.2.4 | |__+1__ |1 |
-|[RTIGER](problems.md#rtiger)|2.1.0 | |__+1__ | |
-|[RVA](problems.md#rva)|0.0.5 |__+1__ | |2 |
-|[RVenn](problems.md#rvenn)|1.1.0 |__+1__ | |1 |
-|[Rwtss](problems.md#rwtss)|0.9.2 |__+1__ | |1 |
-|[saros](problems.md#saros)|1.5.4 |__+2__ | | |
-|[scCustomize](problems.md#sccustomize)|3.0.1 |__+1__ | | |
-|[scoringutils](problems.md#scoringutils)|2.1.0 |__+1__ | | |
-|[SCpubr](problems.md#scpubr)|2.0.2 |__+1__ | | |
-|[scrutiny](problems.md#scrutiny)|0.5.0 |__+3__ | |1 |
-|[scUtils](problems.md#scutils)|0.1.0 |__+1__ | |1 |
-|[SDMtune](problems.md#sdmtune)|1.3.2 |__+1__ | |1 |
-|[seAMLess](problems.md#seamless)|0.1.1 |__+1__ | | |
-|[see](problems.md#see)|0.11.0 |__+2__ | | |
-|[seedreg](problems.md#seedreg)|1.0.3 |__+1__ | | |
-|[shadowtext](problems.md#shadowtext)|0.1.4 | |__+1__ | |
-|[shiny](problems.md#shiny)|1.10.0 |__+1__ | |1 |
-|[shinyMixR](problems.md#shinymixr)|0.5.0 |__+1__ | | |
-|[simmr](problems.md#simmr)|0.5.1.217 |__+1__ | | |
-|[simplecolors](problems.md#simplecolors)|0.1.2 |__+1__ | | |
-|[sjPlot](problems.md#sjplot)|2.8.17 |__+1__ | | |
-|[smer](problems.md#smer)|0.0.1 |__+1__ | |2 |
-|[spacejamr](problems.md#spacejamr)|0.2.1 |__+1__ | | |
-|[spatialwarnings](problems.md#spatialwarnings)|3.1.0 |__+1__ | |1 |
-|[spectralR](problems.md#spectralr)|0.1.3 |__+1__ | | |
-|[spinifex](problems.md#spinifex)|0.3.8 |__+1__ | | |
-|[sport](problems.md#sport)|0.2.1 |__+1__ | |1 |
-|[sportyR](problems.md#sportyr)|2.2.2 |__+1__ | | |
-|[SPUTNIK](problems.md#sputnik)|1.4.2 | |__+1__ | |
-|[ssd4mosaic](problems.md#ssd4mosaic)|1.0.3 |__+1__ | |1 |
-|[sssc](problems.md#sssc)|1.0.0 | |__+1__ | |
-|[states](problems.md#states)|0.3.2 |__+1__ | | |
-|[statgenGWAS](problems.md#statgengwas)|1.0.11 |__+1__ | |1 |
-|[statgenGxE](problems.md#statgengxe)|1.0.9 |__+1__ | |1 |
-|[statgenHTP](problems.md#statgenhtp)|1.0.8 |__+1__ | |2 |
-|[statgenIBD](problems.md#statgenibd)|1.0.8 |__+1__ | |2 |
-|[statgenSTA](problems.md#statgensta)|1.0.14 |__+1__ | |2 |
-|[stRoke](problems.md#stroke)|24.10.1 |__+1__ | |1 |
-|[Superpower](problems.md#superpower)|0.2.3 |__+1__ | | |
-|[synthpop](problems.md#synthpop)|1.9-1.1 |__+1__ |1 | |
-|[tastypie](problems.md#tastypie)|0.1.1 |__+1__ | | |
-|[TcGSA](problems.md#tcgsa)|0.12.10 | |__+1__ | |
-|[teal.widgets](problems.md#tealwidgets)|0.4.3 |__+1__ | | |
-|[TestGardener](problems.md#testgardener)|3.3.5 |__+1__ | | |
-|[tidyEdSurvey](problems.md#tidyedsurvey)|0.1.3 |__+1__ | | |
-|[tidypaleo](problems.md#tidypaleo)|0.1.3 | |__+1__ | |
-|[tidyposterior](problems.md#tidyposterior)|1.0.1 |__+1__ | | |
-|[TPMplt](problems.md#tpmplt)|0.1.6 | |__+1__ | |
-|[track2KBA](problems.md#track2kba)|1.1.2 |__+1__ | | |
-|[tradeoffaucdim](problems.md#tradeoffaucdim)|0.1.0 |__+1__ | |1 |
-|[TransProR](problems.md#transpror)|1.0.5 |__+1__ | | |
-|[trelliscopejs](problems.md#trelliscopejs)|0.2.6 | |__+1__ | |
-|[triplot](problems.md#triplot)|1.3.0 |__+2__ | |1 |
-|[ulrb](problems.md#ulrb)|0.1.6 |__+1__ | | |
-|[UnalR](problems.md#unalr)|1.0.0 |__+1__ | |2 |
-|[vaccine](problems.md#vaccine)|1.3.0 |__+1__ | | |
-|[vaccineff](problems.md#vaccineff)|1.0.0 |__+1__ | | |
-|[vanquish](problems.md#vanquish)|1.0.0 | |__+1__ | |
-|[VarSelLCM](problems.md#varsellcm)|2.1.3.1 |__+1__ | |1 |
-|[vDiveR](problems.md#vdiver)|2.0.1 |__+1__ | |1 |
-|[vip](problems.md#vip)|0.4.1 |__+1__ | |2 |
-|[visualpred](problems.md#visualpred)|0.1.1 | |__+1__ | |
-|[voluModel](problems.md#volumodel)|0.2.2 |__+2__ | | |
-|[vvshiny](problems.md#vvshiny)|0.1.1 |__+1__ | | |
-|[washi](problems.md#washi)|0.2.0 |__+1__ | | |
-|[windfarmGA](problems.md#windfarmga)|4.0.0 |__+1__ | | |
-|[wql](problems.md#wql)|1.0.2 |__+2__ | | |
-|[xaringanthemer](problems.md#xaringanthemer)|0.4.3 |__+1__ | | |
-|[xpose.xtras](problems.md#xposextras)|0.0.2 |__+3__ | |2 |
-|[ZetaSuite](problems.md#zetasuite)|1.0.1 | |__+1__ |1 |
+|package |version |error |warning |note |
+|:---------------|:-------|:------|:-------|:----|
+|[adproclus](problems.md#adproclus)|2.0.0 |__+1__ | | |
+|[allMT](problems.md#allmt)|0.1.0 |__+1__ | |1 |
+|[APCI](problems.md#apci)|1.0.8 |__+1__ | | |
+|[chest](problems.md#chest)|0.3.7 |__+2__ | | |
+|[decisionSupport](problems.md#decisionsupport)|1.115 |__+1__ | | |
+|[foqat](problems.md#foqat)|2.0.8.2 |__+1__ | | |
+|[ggformula](problems.md#ggformula)|1.0.0 | |__+1__ |1 |
+|[ggiraph](problems.md#ggiraph)|0.9.2 |__+1__ | |1 |
+|[ggpp](problems.md#ggpp)|0.5.9 |__+1__ | | |
+|[ggside](problems.md#ggside)|0.4.0 | |__+1__ | |
+|[ggsurveillance](problems.md#ggsurveillance)|0.5.1 |__+1__ | |1 |
+|[infer](problems.md#infer)|1.0.9 |__+2__ | | |
+|[MetAlyzer](problems.md#metalyzer)|1.1.0 |__+1__ | | |
+|[nett](problems.md#nett)|1.0.0 |__+1__ | |1 |
+|[NMF](problems.md#nmf)|0.28 |__+1__ |1 | |
+|[QurvE](problems.md#qurve)|1.1.2 |__+1__ | |1 |
+|[testcorr](problems.md#testcorr)|0.3.0 |__+1__ |1 | |
+|[wql](problems.md#wql)|1.0.3 |__+2__ | | |
+|[WRTDStidal](problems.md#wrtdstidal)|1.1.4 |__+2__ | |1 |
diff --git a/revdep/cran.md b/revdep/cran.md
index 984c6f80c3..db5474aeba 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,1125 +1,140 @@
## revdepcheck results
-We checked 5736 reverse dependencies (5733 from CRAN + 3 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 5985 reverse dependencies (5976 from CRAN + 9 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
- * We saw 327 new problems
- * We failed to check 28 packages
+ * We saw 19 new problems
+ * We failed to check 65 packages
Issues with CRAN packages are summarised below.
### New problems
(This reports the first line of each new failure)
-* adklakedata
- checking examples ... ERROR
-
-* adsoRptionCMF
- checking examples ... ERROR
-
-* adw
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* afex
- checking re-building of vignette outputs ... ERROR
-
-* AgroR
- checking examples ... ERROR
-
-* AgroReg
- checking examples ... ERROR
-
-* alookr
- checking examples ... ERROR
-
-* AnalysisLin
- checking examples ... ERROR
-
-* andurinha
- checking tests ... ERROR
-
-* animbook
- checking examples ... ERROR
-
-* ANN2
- checking tests ... ERROR
-
-* APackOfTheClones
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* applicable
- checking tests ... ERROR
-
-* arena2r
- checking tests ... ERROR
-
-* ASRgenomics
- checking tests ... ERROR
-
-* assignPOP
- checking tests ... ERROR
-
-* autocogs
- checking tests ... ERROR
-
-* autoplotly
- checking tests ... ERROR
-
-* bayesAB
- checking tests ... ERROR
-
-* bayesassurance
- checking tests ... ERROR
-
-* BayesCVI
- checking whether package ‘BayesCVI’ can be installed ... WARNING
-
-* BayesianReasoning
- checking tests ... ERROR
-
-* BayesMultiMode
- checking whether package ‘BayesMultiMode’ can be installed ... WARNING
-
-* BCEA
- checking examples ... ERROR
-
-* bdsm
- checking tests ... ERROR
-
-* BeeBDC
- checking tests ... ERROR
-
-* benchr
- checking tests ... ERROR
-
-* biclustermd
- checking tests ... ERROR
-
-* biometryassist
- checking tests ... ERROR
-
-* BiVariAn
- checking examples ... ERROR
- checking tests ... ERROR
-
-* brolgar
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* bullseye
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* calmr
- checking tests ... ERROR
-
-* canvasXpress
- checking tests ... ERROR
-
-* carbonr
- checking tests ... ERROR
-
-* caretEnsemble
- checking installed package size ... NOTE
-
-* cartographr
- checking tests ... ERROR
-
-* causact
- checking tests ... ERROR
-
-* CausalImpact
- checking tests ... ERROR
-
-* centerline
- checking examples ... ERROR
- checking tests ... ERROR
-
-* Certara.Xpose.NLME
- checking examples ... ERROR
-
-* cheem
- checking tests ... ERROR
-
-* circumplex
- checking tests ... ERROR
-
-* clifro
- checking tests ... ERROR
-
-* climwin
- checking tests ... ERROR
-
-* clockSim
- checking whether package ‘clockSim’ can be installed ... WARNING
-
-* cmcR
- checking tests ... ERROR
-
-* cnmap
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* conquestr
- checking tests ... ERROR
-
-* constructive
- checking tests ... ERROR
-
-* CoSMoS
- checking re-building of vignette outputs ... ERROR
-
-* countfitteR
- checking tests ... ERROR
-
-* covidcast
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* cowplot
- checking tests ... ERROR
-
-* ctrialsgov
- checking tests ... ERROR
-
-* cvms
- checking tests ... ERROR
-
-* cylcop
- checking examples ... ERROR
-
-* D2MCS
- checking tests ... ERROR
-
-* dabestr
- checking tests ... ERROR
-
-* daiquiri
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* DAISIEprep
- checking tests ... ERROR
-
-* dams
- checking re-building of vignette outputs ... ERROR
-
-* Deducer
- checking whether package ‘Deducer’ can be installed ... WARNING
-
-* dendextend
- checking tests ... ERROR
-
-* DImodelsVis
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* directlabels
- checking re-building of vignette outputs ... ERROR
-
-* DiSCos
- checking tests ... ERROR
-
-* distributions3
- checking tests ... ERROR
-
-* dittoViz
- checking examples ... ERROR
- checking tests ... ERROR
-
-* duke
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* easyalluvial
- checking tests ... ERROR
-
-* easysurv
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* ecocbo
- checking tests ... ERROR
-
-* EGM
- checking tests ... ERROR
-
-* eks
- checking S3 generic/method consistency ... WARNING
-
-* ENMTools
- checking tests ... ERROR
-
-* epos
- checking tests ... ERROR
-
-* EQUALSTATS
- checking examples ... ERROR
-
-* equatiomatic
- checking re-building of vignette outputs ... ERROR
-
-* errors
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* eventstudyr
- checking tests ... ERROR
-
-* ez
- checking examples ... ERROR
-
-* ezEDA
- checking tests ... ERROR
-
-* ezplot
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* fabletools
- checking tests ... ERROR
-
-* fairmodels
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* fairness
- checking whether package ‘fairness’ can be installed ... WARNING
-
-* faux
- checking examples ... ERROR
- checking tests ... ERROR
-
-* feasts
- checking tests ... ERROR
-
-* fec16
- checking re-building of vignette outputs ... ERROR
-
-* flextable
- checking examples ... ERROR
-
-* fmf
- checking whether package ‘fmf’ can be installed ... WARNING
-
-* forestPSD
- checking examples ... ERROR
-
-* FunnelPlotR
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* gapfill
- checking tests ... ERROR
-
-* genekitr
- checking examples ... ERROR
-
-* geneSLOPE
- checking whether package ‘geneSLOPE’ can be installed ... WARNING
-
-* geofacet
- checking S3 generic/method consistency ... WARNING
-
-* geomtextpath
- checking examples ... ERROR
- checking tests ... ERROR
-
-* gfoRmulaICE
- checking tests ... ERROR
-
-* gg1d
- checking examples ... ERROR
- checking tests ... ERROR
-
-* ggalign
- checking examples ... ERROR
- checking tests ... ERROR
- checking S3 generic/method consistency ... WARNING
- checking Rd cross-references ... WARNING
- checking for code/documentation mismatches ... WARNING
-
-* ggblend
- checking tests ... ERROR
-
-* ggborderline
- checking examples ... ERROR
-
-* ggbrain
- checking S3 generic/method consistency ... WARNING
-
-* ggbreak
- checking re-building of vignette outputs ... ERROR
- checking S3 generic/method consistency ... WARNING
-
-* ggbump
- checking tests ... ERROR
-
-* ggdark
- checking examples ... ERROR
- checking tests ... ERROR
-
-* ggdemetra
- checking whether package ‘ggdemetra’ can be installed ... WARNING
-
-* ggDoubleHeat
- checking examples ... ERROR
-
-* ggEDA
- checking examples ... ERROR
- checking tests ... ERROR
-
-* ggedit
- checking examples ... ERROR
-
-* ggfixest
- checking tests ... ERROR
-
-* ggfocus
- checking examples ... ERROR
- checking S3 generic/method consistency ... WARNING
-
-* ggformula
- checking for code/documentation mismatches ... WARNING
-
-* ggfortify
- checking tests ... ERROR
-
-* ggfx
- checking S3 generic/method consistency ... WARNING
-
-* gggenomes
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* ggghost
- checking examples ... ERROR
-
-* gghalves
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* ggimage
- checking S3 generic/method consistency ... WARNING
-
-* ggiraph
- checking examples ... ERROR
- checking tests ... ERROR
-
-* ggiraphExtra
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* ggmap
- checking whether package ‘ggmap’ can be installed ... WARNING
-
-* ggpackets
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
- checking S3 generic/method consistency ... WARNING
-
-* ggparallel
- checking tests ... ERROR
-
-* ggpath
- checking tests ... ERROR
-
-* ggplot2.utils
- checking tests ... ERROR
-
-* ggPMX
- checking re-building of vignette outputs ... ERROR
-
-* ggpol
- checking examples ... ERROR
-
-* ggprism
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* ggpubr
- checking tests ... ERROR
-
-* ggraph
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
- checking S3 generic/method consistency ... WARNING
-
-* ggResidpanel
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* ggRtsy
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* ggseqplot
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* ggside
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
- checking S3 generic/method consistency ... WARNING
- checking for code/documentation mismatches ... WARNING
- checking R code for possible problems ... NOTE
-
-* ggspatial
- checking S3 generic/method consistency ... WARNING
-
-* ggstatsplot
- checking tests ... ERROR
-
-* ggstream
- checking tests ... ERROR
-
-* ggswissmaps
- checking whether package ‘ggswissmaps’ can be installed ... WARNING
- checking whether the namespace can be loaded with stated dependencies ... NOTE
-
-* ggtangle
- checking re-building of vignette outputs ... ERROR
- checking S3 generic/method consistency ... WARNING
-
-* ggtime
- checking tests ... ERROR
-
-* ggVennDiagram
- checking re-building of vignette outputs ... ERROR
-
-* ggview
- checking S3 generic/method consistency ... WARNING
-
-* grafify
- checking tests ... ERROR
-
-* graphPAF
- checking examples ... ERROR
-
-* GRShiny
- checking tests ... ERROR
-
-* grwat
- checking tests ... ERROR
-
-* gtExtras
- checking tests ... ERROR
-
-* handwriterRF
- checking tests ... ERROR
-
-* harmony
- checking re-building of vignette outputs ... ERROR
-
-* hatchR
- checking tests ... ERROR
-
-* heatmaply
- checking tests ... ERROR
-
-* hesim
- checking tests ... ERROR
-
-* hrbrthemes
- checking tests ... ERROR
-
-* hyperoverlap
- checking whether package ‘hyperoverlap’ can be installed ... WARNING
-
-* hypsoLoop
- checking whether package ‘hypsoLoop’ can be installed ... WARNING
-
-* ImHD
- checking whether package ‘ImHD’ can be installed ... WARNING
-
-* implicitMeasures
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* imputeTS
- checking tests ... ERROR
-
-* infer
- checking tests ... ERROR
- checking S3 generic/method consistency ... WARNING
-
-* inTextSummaryTable
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* iNZightTS
- checking tests ... ERROR
-
-* IRon
- checking examples ... ERROR
-
-* isoorbi
- checking tests ... ERROR
-
-* jskm
- checking re-building of vignette outputs ... ERROR
-
-* lares
- checking examples ... ERROR
-
-* latrend
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* legendry
- checking whether the package can be loaded with stated dependencies ... WARNING
- checking whether the package can be unloaded cleanly ... WARNING
- checking whether the namespace can be loaded with stated dependencies ... WARNING
- checking dependencies in R code ... NOTE
- checking R code for possible problems ... NOTE
-
-* lemon
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
- checking S3 generic/method consistency ... WARNING
-
-* lfproQC
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* lgpr
- checking tests ... ERROR
-
-* listdown
- checking examples ... ERROR
- checking tests ... ERROR
-
-* LMD
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* longevity
- checking examples ... ERROR
- checking tests ... ERROR
-
-* ltertools
- checking tests ... ERROR
-
-* manymodelr
- checking whether package ‘manymodelr’ can be installed ... WARNING
-
-* manynet
- checking examples ... ERROR
- checking tests ... ERROR
-
-* marquee
- checking examples ... ERROR
-
-* MaxWiK
- checking re-building of vignette outputs ... ERROR
-
-* mcStats
- checking tests ... ERROR
-
-* meme
- checking re-building of vignette outputs ... ERROR
-
-* metagam
- checking re-building of vignette outputs ... ERROR
-
-* MetaNet
- checking examples ... ERROR
-
-* metR
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* mgcViz
- checking re-building of vignette outputs ... ERROR
-
-* MIC
- checking examples ... ERROR
-
-* mikropml
- checking tests ... ERROR
-
-* MiMIR
- checking examples ... ERROR
-
-* miRetrieve
- checking tests ... ERROR
-
-* MiscMetabar
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* mistral
- checking whether package ‘mistral’ can be installed ... WARNING
-
-* misty
- checking examples ... ERROR
-
-* MKpower
- checking examples ... ERROR
-
-* modeldb
- checking tests ... ERROR
-
-* Momocs
- checking examples ... ERROR
-
-* mpactr
- checking tests ... ERROR
-
-* mshap
- checking tests ... ERROR
-
-* mtdesign
- checking tests ... ERROR
-
-* mverse
- checking re-building of vignette outputs ... ERROR
-
-* mxnorm
- checking tests ... ERROR
-
-* NHSRplotthedots
- checking tests ... ERROR
-
-* nlmixr2plot
- checking tests ... ERROR
-
-* normfluodbf
- checking tests ... ERROR
-
-* nzelect
- checking re-building of vignette outputs ... ERROR
-
-* ofpetrial
- checking examples ... ERROR
-
-* ogrdbstats
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* OmicNavigator
- checking tests ... ERROR
-
-* ordinalsimr
- checking tests ... ERROR
-
-* ordr
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* pafr
- checking tests ... ERROR
- checking S3 generic/method consistency ... WARNING
-
-* palettes
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* patchwork
- checking S3 generic/method consistency ... WARNING
-
-* patientProfilesVis
- checking re-building of vignette outputs ... ERROR
-
-* pcr
- checking tests ... ERROR
-
-* phylepic
- checking S3 generic/method consistency ... WARNING
-
-* plantTracker
- checking re-building of vignette outputs ... ERROR
-
-* plotdap
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* plotDK
- checking tests ... ERROR
-
-* PlotFTIR
- checking tests ... ERROR
-
-* plotor
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* plotROC
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* plotthis
- checking examples ... ERROR
-
-* pmxTools
- checking tests ... ERROR
-
-* pollster
- checking re-building of vignette outputs ... ERROR
-
-* PoweREST
- checking examples ... ERROR
-
-* precintcon
- checking examples ... ERROR
-
-* predint
- checking tests ... ERROR
-
-* PredPsych
- checking whether package ‘PredPsych’ can be installed ... WARNING
-
-* predRupdate
- checking tests ... ERROR
-
-* priorsense
- checking tests ... ERROR
-
-* probably
- checking tests ... ERROR
-
-* psborrow
- checking tests ... ERROR
- checking whether package ‘psborrow’ can be installed ... WARNING
-
-* psc
- checking re-building of vignette outputs ... ERROR
-
-* pscore
- checking whether package ‘pscore’ can be installed ... WARNING
-
-* pubh
- checking examples ... ERROR
-
-* qad
- checking tests ... ERROR
-
-* qdap
- checking tests ... ERROR
-
-* qgcompint
- checking examples ... ERROR
-
-* quantities
- checking re-building of vignette outputs ... ERROR
-
-* quickPlot
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* quickReg
- checking re-building of vignette outputs ... ERROR
-
-* Radviz
- checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* RamanMP
- checking examples ... ERROR
-
-* randomForestExplainer
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* rasterdiv
- checking re-building of vignette outputs ... ERROR
-
-* rater
- checking tests ... ERROR
-
-* ratlas
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* rbioacc
+* adproclus
checking tests ... ERROR
-* rbiom
+* allMT
checking examples ... ERROR
-* reda
+* APCI
checking tests ... ERROR
-* regtomean
- checking whether package ‘regtomean’ can be installed ... WARNING
-
-* rempsyc
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* rmweather
- checking tests ... ERROR
-
-* robCompositions
- checking whether package ‘robCompositions’ can be installed ... WARNING
-
-* rrr
+* chest
checking examples ... ERROR
checking re-building of vignette outputs ... ERROR
-* RSDA
- checking whether package ‘RSDA’ can be installed ... WARNING
-
-* RTIGER
- checking whether package ‘RTIGER’ can be installed ... WARNING
-
-* RVA
- checking re-building of vignette outputs ... ERROR
-
-* RVenn
- checking tests ... ERROR
-
-* Rwtss
- checking tests ... ERROR
-
-* saros
+* decisionSupport
checking examples ... ERROR
- checking tests ... ERROR
-
-* scCustomize
- checking examples ... ERROR
-
-* scoringutils
- checking examples ... ERROR
-
-* SCpubr
- checking tests ... ERROR
-* scrutiny
- checking examples ... ERROR
- checking tests ... ERROR
+* foqat
checking re-building of vignette outputs ... ERROR
-* scUtils
- checking tests ... ERROR
+* ggformula
+ checking for code/documentation mismatches ... WARNING
-* SDMtune
+* ggiraph
checking tests ... ERROR
-* seAMLess
- checking examples ... ERROR
-
-* see
- checking examples ... ERROR
+* ggpp
checking tests ... ERROR
-* seedreg
- checking examples ... ERROR
-
-* shadowtext
- checking dependencies in R code ... WARNING
+* ggside
+ checking for code/documentation mismatches ... WARNING
-* shiny
+* ggsurveillance
checking tests ... ERROR
-* shinyMixR
+* infer
checking tests ... ERROR
-
-* simmr
checking re-building of vignette outputs ... ERROR
-* simplecolors
- checking tests ... ERROR
-
-* sjPlot
+* MetAlyzer
checking re-building of vignette outputs ... ERROR
-* smer
+* nett
checking re-building of vignette outputs ... ERROR
-* spacejamr
- checking tests ... ERROR
-
-* spatialwarnings
- checking tests ... ERROR
-
-* spectralR
- checking tests ... ERROR
-
-* spinifex
- checking tests ... ERROR
-
-* sport
- checking tests ... ERROR
-
-* sportyR
- checking tests ... ERROR
-
-* SPUTNIK
- checking whether package ‘SPUTNIK’ can be installed ... WARNING
-
-* ssd4mosaic
- checking tests ... ERROR
-
-* sssc
- checking whether package ‘sssc’ can be installed ... WARNING
-
-* states
- checking tests ... ERROR
-
-* statgenGWAS
- checking tests ... ERROR
-
-* statgenGxE
- checking tests ... ERROR
-
-* statgenHTP
- checking tests ... ERROR
-
-* statgenIBD
- checking tests ... ERROR
-
-* statgenSTA
- checking tests ... ERROR
-
-* stRoke
- checking tests ... ERROR
-
-* Superpower
- checking tests ... ERROR
-
-* synthpop
- checking examples ... ERROR
-
-* tastypie
- checking tests ... ERROR
-
-* TcGSA
- checking Rd cross-references ... WARNING
-
-* teal.widgets
- checking tests ... ERROR
-
-* TestGardener
- checking examples ... ERROR
-
-* tidyEdSurvey
- checking tests ... ERROR
-
-* tidypaleo
- checking S3 generic/method consistency ... WARNING
-
-* tidyposterior
- checking tests ... ERROR
-
-* TPMplt
- checking whether package ‘TPMplt’ can be installed ... WARNING
-
-* track2KBA
- checking tests ... ERROR
-
-* tradeoffaucdim
- checking tests ... ERROR
-
-* TransProR
- checking examples ... ERROR
-
-* trelliscopejs
- checking S3 generic/method consistency ... WARNING
-
-* triplot
+* NMF
checking examples ... ERROR
- checking tests ... ERROR
-
-* ulrb
- checking re-building of vignette outputs ... ERROR
-
-* UnalR
- checking tests ... ERROR
-
-* vaccine
- checking tests ... ERROR
-
-* vaccineff
- checking tests ... ERROR
-
-* vanquish
- checking whether package ‘vanquish’ can be installed ... WARNING
-* VarSelLCM
- checking re-building of vignette outputs ... ERROR
-
-* vDiveR
+* QurvE
checking examples ... ERROR
-* vip
- checking tests ... ERROR
-
-* visualpred
- checking whether package ‘visualpred’ can be installed ... WARNING
-
-* voluModel
+* testcorr
checking examples ... ERROR
- checking re-building of vignette outputs ... ERROR
-
-* vvshiny
- checking tests ... ERROR
-
-* washi
- checking tests ... ERROR
-
-* windfarmGA
- checking tests ... ERROR
* wql
checking examples ... ERROR
checking re-building of vignette outputs ... ERROR
-* xaringanthemer
- checking re-building of vignette outputs ... ERROR
-
-* xpose.xtras
+* WRTDStidal
checking examples ... ERROR
- checking tests ... ERROR
checking re-building of vignette outputs ... ERROR
-* ZetaSuite
- checking whether package ‘ZetaSuite’ can be installed ... WARNING
-
### Failed to check
-* bartMan (NA)
-* bayesdfa (NA)
-* cocktailApp (NA)
-* coda.plot (NA)
-* ctsem (NA)
-* EcoEnsemble (NA)
-* fio (NA)
-* GGally (NA)
-* ggmosaic (NA)
-* ggmulti (NA)
-* ggRandomForests (NA)
-* ggtern (NA)
-* metabolic (NA)
-* multinma (NA)
-* MultiTraits (NA)
-* pacta.loanbook (NA)
-* PieGlyph (NA)
-* rmsb (NA)
-* rshift (NA)
-* RSP (NA)
-* rstanarm (NA)
-* scplot (NA)
-* streamDAG (NA)
-* TestAnaAPP (NA)
-* tidydr (NA)
-* tricolore (NA)
-* TriDimRegression (NA)
-* xpose (NA)
+* bayesdfa (NA)
+* bmgarch (NA)
+* cdcatR (NA)
+* cdmTools (NA)
+* cinaR (NA)
+* ClusterGVis (NA)
+* cocktailApp (NA)
+* counterfactuals (NA)
+* ctsem (NA)
+* DFD (NA)
+* EcoEnsemble (NA)
+* EGAnet (NA)
+* fio (NA)
+* GDINA (NA)
+* genekitr (NA)
+* GeneSelectR (NA)
+* ggmosaic (NA)
+* ggpicrust2 (NA)
+* ggsem (NA)
+* ggtern (NA)
+* grandR (NA)
+* immcp (NA)
+* jmv (NA)
+* latentFactoR (NA)
+* lcsm (NA)
+* manymome (NA)
+* ModStatR (NA)
+* multinma (NA)
+* neatStats (NA)
+* negligible (NA)
+* numbat (NA)
+* OlinkAnalyze (NA)
+* parameters (NA)
+* pctax (NA)
+* phylosem (NA)
+* predictionInterval (NA)
+* psychonetrics (NA)
+* psycModel (NA)
+* rattle (NA)
+* ReporterScore (NA)
+* Revticulate (NA)
+* rmsb (NA)
+* Rnest (NA)
+* rosetta (NA)
+* rSDR (NA)
+* rshift (NA)
+* rstanarm (NA)
+* RVA (NA)
+* SCpubr (NA)
+* semtree (NA)
+* sprtt (NA)
+* streamDAG (NA)
+* SurprisalAnalysis (NA)
+* Surrogate (NA)
+* tabledown (NA)
+* TELP (NA)
+* TestAnaAPP (NA)
+* tidybins (NA)
+* tidycomm (NA)
+* tidySEM (NA)
+* tinyarray (NA)
+* TransProR (NA)
+* tricolore (NA)
+* TriDimRegression (NA)
+* ufs (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index b252e91055..e48c3e9a65 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -1,65 +1,3 @@
-# bartMan
-
-
-
-* Version: 0.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/bartMan
-* Date/Publication: 2024-07-24 12:10:02 UTC
-* Number of recursive dependencies: 132
-
-Run `revdepcheck::cloud_details(, "bartMan")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘bartMan’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bartMan’ ...
-** package ‘bartMan’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in eval(exprs[i], envir) : object 'justify_grobs' not found
-Error: unable to load R code in package ‘bartMan’
-Execution halted
-ERROR: lazy loading failed for package ‘bartMan’
-* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bartMan’ ...
-** package ‘bartMan’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (bartMan)
-
-
-```
# bayesdfa
@@ -112,33 +50,47 @@ ERROR: configuration failed for package ‘bayesdfa’
```
-# cocktailApp
+# bmgarch
-* Version: 0.2.3
-* GitHub: https://github.com/shabbychef/cocktailApp
-* Source code: https://github.com/cran/cocktailApp
-* Date/Publication: 2023-07-19 13:40:09 UTC
-* Number of recursive dependencies: 93
+* Version: 2.0.0
+* GitHub: https://github.com/ph-rast/bmgarch
+* Source code: https://github.com/cran/bmgarch
+* Date/Publication: 2023-09-12 00:40:02 UTC
+* Number of recursive dependencies: 78
-Run `revdepcheck::cloud_details(, "cocktailApp")` for more info
+Run `revdepcheck::cloud_details(, "bmgarch")` for more info
## Newly broken
-* checking whether package ‘cocktailApp’ can be installed ... ERROR
+* checking whether package ‘bmgarch’ can be installed ... ERROR
```
Installation failed.
- See ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/00install.out’ for details.
```
## Newly fixed
-* checking data for non-ASCII characters ... NOTE
+* checking installed package size ... NOTE
+ ```
+ installed size is 303.9Mb
+ sub-directories of 1Mb or more:
+ libs 303.0Mb
+ ```
+
+* checking Rd files ... NOTE
+ ```
+ checkRd: (-1) dot-pred_array_to_df.Rd:20: Lost braces; missing escapes or markup?
+ 20 | Helper function for as.data.frame.{fitted, forecast}. Converts predictive array to data.frame.
+ | ^
+ ```
+
+* checking for GNU extensions in Makefiles ... NOTE
```
- Note: found 14729 marked UTF-8 strings
+ GNU make is a SystemRequirements.
```
## Installation
@@ -146,114 +98,144 @@ Run `revdepcheck::cloud_details(, "cocktailApp")` for more info
### Devel
```
-* installing *source* package ‘cocktailApp’ ...
-** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘bmgarch’ ...
+** package ‘bmgarch’ successfully unpacked and MD5 sums checked
** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'ggtern', details:
- call: NULL
- error: object properties are invalid:
-- @lineend must be or , not S3
-Execution halted
-ERROR: lazy loading failed for package ‘cocktailApp’
-* removing ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/cocktailApp’
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
+...
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
+/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
+ 654 | return internal::first_aligned::alignment),Derived>(m);
+ | ^~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_DCCMGARCH.o] Error 1
+ERROR: compilation failed for package ‘bmgarch’
+* removing ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/bmgarch’
```
### CRAN
```
-* installing *source* package ‘cocktailApp’ ...
-** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘bmgarch’ ...
+** package ‘bmgarch’ successfully unpacked and MD5 sums checked
** using staged installation
-** R
-** data
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
+...
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
-*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
+** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
-* DONE (cocktailApp)
+* DONE (bmgarch)
```
-# coda.plot
+# cdcatR
-* Version: 0.1.9
-* GitHub: NA
-* Source code: https://github.com/cran/coda.plot
-* Date/Publication: 2025-04-20 21:30:02 UTC
-* Number of recursive dependencies: 41
+* Version: 1.0.6
+* GitHub: https://github.com/miguel-sorrel/cdcatR
+* Source code: https://github.com/cran/cdcatR
+* Date/Publication: 2022-05-25 15:10:08 UTC
+* Number of recursive dependencies: 126
-Run `revdepcheck::cloud_details(, "coda.plot")` for more info
+Run `revdepcheck::cloud_details(, "cdcatR")` for more info
-## Newly broken
-
-* checking whether package ‘coda.plot’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘coda.plot’ ...
-** package ‘coda.plot’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'ggtern', details:
- call: NULL
- error: object properties are invalid:
-- @lineend must be or , not S3
-Execution halted
-ERROR: lazy loading failed for package ‘coda.plot’
-* removing ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/coda.plot’
+* using log directory ‘/tmp/workdir/cdcatR/new/cdcatR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘cdcatR/DESCRIPTION’ ... OK
+...
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* DONE
+Status: OK
+
+
+
```
### CRAN
```
-* installing *source* package ‘coda.plot’ ...
-** package ‘coda.plot’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (coda.plot)
+* using log directory ‘/tmp/workdir/cdcatR/old/cdcatR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘cdcatR/DESCRIPTION’ ... OK
+...
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* DONE
+Status: OK
+
+
+
```
-# cry
+# cdmTools
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/cry
-* Number of recursive dependencies: 50
+* Version: 1.0.6
+* GitHub: https://github.com/pablo-najera/cdmTools
+* Source code: https://github.com/cran/cdmTools
+* Date/Publication: 2025-05-19 08:10:02 UTC
+* Number of recursive dependencies: 121
-Run `revdepcheck::cloud_details(, "cry")` for more info
+Run `revdepcheck::cloud_details(, "cdmTools")` for more info
@@ -262,7 +244,27 @@ Run `revdepcheck::cloud_details(, "cry")` for more info
### Devel
```
-
+* using log directory ‘/tmp/workdir/cdmTools/new/cdmTools.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘cdmTools/DESCRIPTION’ ... OK
+...
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... OK
+* DONE
+Status: OK
@@ -272,194 +274,205 @@ Run `revdepcheck::cloud_details(, "cry")` for more info
### CRAN
```
-
+* using log directory ‘/tmp/workdir/cdmTools/old/cdmTools.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘cdmTools/DESCRIPTION’ ... OK
+...
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... OK
+* DONE
+Status: OK
```
-# ctsem
+# cinaR
-* Version: 3.10.3
-* GitHub: https://github.com/cdriveraus/ctsem
-* Source code: https://github.com/cran/ctsem
-* Date/Publication: 2025-06-21 11:00:02 UTC
-* Number of recursive dependencies: 164
+* Version: 0.2.3
+* GitHub: https://github.com/eonurk/cinaR
+* Source code: https://github.com/cran/cinaR
+* Date/Publication: 2022-05-18 14:00:09 UTC
+* Number of recursive dependencies: 175
-Run `revdepcheck::cloud_details(, "ctsem")` for more info
+Run `revdepcheck::cloud_details(, "cinaR")` for more info
-## In both
-
-* checking whether package ‘ctsem’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘arules’
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘ctsem’ ...
-** package ‘ctsem’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
-using C++17
+* using log directory ‘/tmp/workdir/cinaR/new/cinaR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘cinaR/DESCRIPTION’ ... OK
+...
+* this is package ‘cinaR’ version ‘0.2.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘ChIPseeker’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
-g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
-/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ctsm.o] Error 1
-ERROR: compilation failed for package ‘ctsem’
-* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’
```
### CRAN
```
-* installing *source* package ‘ctsem’ ...
-** package ‘ctsem’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
-using C++17
+* using log directory ‘/tmp/workdir/cinaR/old/cinaR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘cinaR/DESCRIPTION’ ... OK
+...
+* this is package ‘cinaR’ version ‘0.2.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘ChIPseeker’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
-g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
-/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ctsm.o] Error 1
-ERROR: compilation failed for package ‘ctsem’
-* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’
```
-# EcoEnsemble
+# ClusterGVis
-* Version: 1.1.2
-* GitHub: https://github.com/CefasRepRes/EcoEnsemble
-* Source code: https://github.com/cran/EcoEnsemble
-* Date/Publication: 2025-03-18 18:20:02 UTC
-* Number of recursive dependencies: 87
+* Version: 0.1.4
+* GitHub: https://github.com/junjunlab/ClusterGVis
+* Source code: https://github.com/cran/ClusterGVis
+* Date/Publication: 2025-07-19 06:10:02 UTC
+* Number of recursive dependencies: 296
-Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info
+Run `revdepcheck::cloud_details(, "ClusterGVis")` for more info
-## In both
-
-* checking whether package ‘EcoEnsemble’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘EcoEnsemble’ ...
-** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
-using C++17
+* using log directory ‘/tmp/workdir/ClusterGVis/new/ClusterGVis.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ClusterGVis/DESCRIPTION’ ... OK
+...
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
-g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o
-In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
-/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1
-ERROR: compilation failed for package ‘EcoEnsemble’
-* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’
```
### CRAN
```
-* installing *source* package ‘EcoEnsemble’ ...
-** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
-using C++17
+* using log directory ‘/tmp/workdir/ClusterGVis/old/ClusterGVis.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ClusterGVis/DESCRIPTION’ ... OK
+...
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
-g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o
-In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
-/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1
-ERROR: compilation failed for package ‘EcoEnsemble’
-* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’
```
-# fio
+# cocktailApp
-* Version: 0.1.6
-* GitHub: https://github.com/albersonmiranda/fio
-* Source code: https://github.com/cran/fio
-* Date/Publication: 2025-04-06 07:50:02 UTC
-* Number of recursive dependencies: 87
+* Version: 0.2.3
+* GitHub: https://github.com/shabbychef/cocktailApp
+* Source code: https://github.com/cran/cocktailApp
+* Date/Publication: 2023-07-19 13:40:09 UTC
+* Number of recursive dependencies: 92
-Run `revdepcheck::cloud_details(, "fio")` for more info
+Run `revdepcheck::cloud_details(, "cocktailApp")` for more info
## In both
-* checking whether package ‘fio’ can be installed ... ERROR
+* checking whether package ‘cocktailApp’ can be installed ... ERROR
```
Installation failed.
- See ‘/tmp/workdir/fio/new/fio.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/00install.out’ for details.
```
## Installation
@@ -467,200 +480,179 @@ Run `revdepcheck::cloud_details(, "fio")` for more info
### Devel
```
-* installing *source* package ‘fio’ ...
-** package ‘fio’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘cocktailApp’ ...
+** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
** using staged installation
-Error in eval(ei, envir) :
------------------- [UNSUPPORTED RUST VERSION]------------------
-- Minimum supported Rust version is 1.77.
-- Installed Rust version is 1.75.0.
----------------------------------------------------------------
-Calls: source -> withVisible -> eval -> eval
+** R
+** data
+** inst
+** byte-compile and prepare package for lazy loading
+Error: .onLoad failed in loadNamespace() for 'ggtern', details:
+ call: NULL
+ error: object properties are invalid:
+- @lineend must be or , not S3
Execution halted
-ERROR: configuration failed for package ‘fio’
-* removing ‘/tmp/workdir/fio/new/fio.Rcheck/fio’
+ERROR: lazy loading failed for package ‘cocktailApp’
+* removing ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/cocktailApp’
```
### CRAN
```
-* installing *source* package ‘fio’ ...
-** package ‘fio’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘cocktailApp’ ...
+** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
** using staged installation
-Error in eval(ei, envir) :
------------------- [UNSUPPORTED RUST VERSION]------------------
-- Minimum supported Rust version is 1.77.
-- Installed Rust version is 1.75.0.
----------------------------------------------------------------
-Calls: source -> withVisible -> eval -> eval
+** R
+** data
+** inst
+** byte-compile and prepare package for lazy loading
+Error: .onLoad failed in loadNamespace() for 'ggtern', details:
+ call: NULL
+ error: object properties are invalid:
+- @lineend must be or , not S3
Execution halted
-ERROR: configuration failed for package ‘fio’
-* removing ‘/tmp/workdir/fio/old/fio.Rcheck/fio’
+ERROR: lazy loading failed for package ‘cocktailApp’
+* removing ‘/tmp/workdir/cocktailApp/old/cocktailApp.Rcheck/cocktailApp’
```
-# GGally
+# counterfactuals
-* Version: 2.2.1
-* GitHub: https://github.com/ggobi/ggally
-* Source code: https://github.com/cran/GGally
-* Date/Publication: 2024-02-14 00:53:32 UTC
-* Number of recursive dependencies: 142
+* Version: 0.1.6
+* GitHub: https://github.com/dandls/counterfactuals
+* Source code: https://github.com/cran/counterfactuals
+* Date/Publication: 2024-10-17 12:00:06 UTC
+* Number of recursive dependencies: 221
-Run `revdepcheck::cloud_details(, "GGally")` for more info
+Run `revdepcheck::cloud_details(, "counterfactuals")` for more info
-## Newly broken
-
-* checking whether package ‘GGally’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/GGally/new/GGally.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘GGally’ ...
-** package ‘GGally’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in eval(exprs[i], envir) : object 'is.rel' not found
-Error: unable to load R code in package ‘GGally’
-Execution halted
-ERROR: lazy loading failed for package ‘GGally’
-* removing ‘/tmp/workdir/GGally/new/GGally.Rcheck/GGally’
+* using log directory ‘/tmp/workdir/counterfactuals/new/counterfactuals.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘counterfactuals/DESCRIPTION’ ... OK
+...
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
```
### CRAN
```
-* installing *source* package ‘GGally’ ...
-** package ‘GGally’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (GGally)
+* using log directory ‘/tmp/workdir/counterfactuals/old/counterfactuals.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘counterfactuals/DESCRIPTION’ ... OK
+...
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
```
-# ggmosaic
+# cry
-* Version: 0.3.3
-* GitHub: https://github.com/haleyjeppson/ggmosaic
-* Source code: https://github.com/cran/ggmosaic
-* Date/Publication: 2021-02-23 19:50:02 UTC
-* Number of recursive dependencies: 73
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/cry
+* Number of recursive dependencies: 42
-Run `revdepcheck::cloud_details(, "ggmosaic")` for more info
+Run `revdepcheck::cloud_details(, "cry")` for more info
-## Newly broken
+## Error before installation
-* checking whether package ‘ggmosaic’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details.
- ```
+### Devel
-## Newly fixed
+```
-* checking dependencies in R code ... NOTE
- ```
- ':::' call which should be '::': ‘scales:::censor’
- See the note in ?`:::` about the use of this operator.
- Unexported object imported by a ':::' call: ‘productplots:::bound’
- See the note in ?`:::` about the use of this operator.
- ```
-## Installation
-### Devel
-```
-* installing *source* package ‘ggmosaic’ ...
-** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'is.waive' not found
-Error: unable to load R code in package ‘ggmosaic’
-Execution halted
-ERROR: lazy loading failed for package ‘ggmosaic’
-* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’
```
### CRAN
```
-* installing *source* package ‘ggmosaic’ ...
-** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (ggmosaic)
+
+
+
+
```
-# ggmulti
+# ctsem
-* Version: 1.0.7
-* GitHub: NA
-* Source code: https://github.com/cran/ggmulti
-* Date/Publication: 2024-04-09 09:40:05 UTC
-* Number of recursive dependencies: 123
+* Version: 3.10.4
+* GitHub: https://github.com/cdriveraus/ctsem
+* Source code: https://github.com/cran/ctsem
+* Date/Publication: 2025-06-30 16:40:11 UTC
+* Number of recursive dependencies: 166
-Run `revdepcheck::cloud_details(, "ggmulti")` for more info
+Run `revdepcheck::cloud_details(, "ctsem")` for more info
-## Newly broken
+## In both
-* checking whether package ‘ggmulti’ can be installed ... ERROR
+* checking whether package ‘ctsem’ can be installed ... ERROR
```
Installation failed.
- See ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details.
+ ```
+
+* checking package dependencies ... NOTE
+ ```
+ Package suggested but not available for checking: ‘arules’
```
## Installation
@@ -668,192 +660,138 @@ Run `revdepcheck::cloud_details(, "ggmulti")` for more info
### Devel
```
-* installing *source* package ‘ggmulti’ ...
-** package ‘ggmulti’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘ctsem’ ...
+** package ‘ctsem’ successfully unpacked and MD5 sums checked
** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'new_aes' not found
-Error: unable to load R code in package ‘ggmulti’
-Execution halted
-ERROR: lazy loading failed for package ‘ggmulti’
-* removing ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/ggmulti’
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
+...
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
+/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
+ 654 | return internal::first_aligned::alignment),Derived>(m);
+ | ^~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ctsm.o] Error 1
+ERROR: compilation failed for package ‘ctsem’
+* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’
```
### CRAN
```
-* installing *source* package ‘ggmulti’ ...
-** package ‘ggmulti’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘ctsem’ ...
+** package ‘ctsem’ successfully unpacked and MD5 sums checked
** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (ggmulti)
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
+...
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
+/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
+ 654 | return internal::first_aligned::alignment),Derived>(m);
+ | ^~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ctsm.o] Error 1
+ERROR: compilation failed for package ‘ctsem’
+* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’
```
-# ggRandomForests
+# dbrobust
-* Version: 2.2.1
-* GitHub: https://github.com/ehrlinger/ggRandomForests
-* Source code: https://github.com/cran/ggRandomForests
-* Date/Publication: 2022-09-01 09:10:45 UTC
-* Number of recursive dependencies: 96
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/dbrobust
+* Number of recursive dependencies: 128
-Run `revdepcheck::cloud_details(, "ggRandomForests")` for more info
+Run `revdepcheck::cloud_details(, "dbrobust")` for more info
-## In both
-
-* checking whether package ‘ggRandomForests’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ggRandomForests/new/ggRandomForests.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘ggRandomForests’ ...
-** package ‘ggRandomForests’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘var.select’ is not exported by 'namespace:randomForestSRC'
-Execution halted
-ERROR: lazy loading failed for package ‘ggRandomForests’
-* removing ‘/tmp/workdir/ggRandomForests/new/ggRandomForests.Rcheck/ggRandomForests’
+
+
+
+
```
### CRAN
```
-* installing *source* package ‘ggRandomForests’ ...
-** package ‘ggRandomForests’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘var.select’ is not exported by 'namespace:randomForestSRC'
-Execution halted
-ERROR: lazy loading failed for package ‘ggRandomForests’
-* removing ‘/tmp/workdir/ggRandomForests/old/ggRandomForests.Rcheck/ggRandomForests’
+
+
+
+
```
-# ggtern
+# degradr
-* Version: 3.5.0
+* Version: NA
* GitHub: NA
-* Source code: https://github.com/cran/ggtern
-* Date/Publication: 2024-03-24 21:50:02 UTC
-* Number of recursive dependencies: 39
+* Source code: https://github.com/cran/degradr
+* Number of recursive dependencies: 44
-Run `revdepcheck::cloud_details(, "ggtern")` for more info
+Run `revdepcheck::cloud_details(, "degradr")` for more info
-## Newly broken
-
-* checking whether package ‘ggtern’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details.
- ```
-
-## Newly fixed
+## Error before installation
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘chemometrics’
- ```
+### Devel
-## In both
+```
-* checking package dependencies ... NOTE
- ```
- Package which this enhances but not available for checking: ‘sp’
- ```
-## Installation
-### Devel
-```
-* installing *source* package ‘ggtern’ ...
-** package ‘ggtern’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** demo
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'is.zero' not found
-Error: unable to load R code in package ‘ggtern’
-Execution halted
-ERROR: lazy loading failed for package ‘ggtern’
-* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’
```
### CRAN
```
-* installing *source* package ‘ggtern’ ...
-** package ‘ggtern’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** demo
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (ggtern)
+
+
+
+
```
-# metabolic
+# DFD
-* Version: 0.1.2
-* GitHub: https://github.com/fmmattioni/metabolic
-* Source code: https://github.com/cran/metabolic
-* Date/Publication: 2023-10-10 07:40:02 UTC
-* Number of recursive dependencies: 136
+* Version: 0.3.0
+* GitHub: https://github.com/MohmedSoudy/DFD
+* Source code: https://github.com/cran/DFD
+* Date/Publication: 2025-02-11 13:50:11 UTC
+* Number of recursive dependencies: 211
-Run `revdepcheck::cloud_details(, "metabolic")` for more info
+Run `revdepcheck::cloud_details(, "DFD")` for more info
@@ -862,27 +800,27 @@ Run `revdepcheck::cloud_details(, "metabolic")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/metabolic/new/metabolic.Rcheck’
+* using log directory ‘/tmp/workdir/DFD/new/DFD.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
-* running under: Ubuntu 24.04.2 LTS
+* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘metabolic/DESCRIPTION’ ... OK
+* checking for file ‘DFD/DESCRIPTION’ ... OK
...
-* checking data for non-ASCII characters ... NOTE
- Note: found 37 marked UTF-8 strings
-* checking LazyData ... OK
-* checking data for ASCII and uncompressed saves ... OK
-* checking examples ... OK
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘spelling.R’
+* this is package ‘DFD’ version ‘0.3.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘signatureSearch’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
* DONE
-Status: 2 NOTEs
+Status: 1 ERROR
@@ -892,53 +830,88 @@ Status: 2 NOTEs
### CRAN
```
-* using log directory ‘/tmp/workdir/metabolic/old/metabolic.Rcheck’
+* using log directory ‘/tmp/workdir/DFD/old/DFD.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
-* running under: Ubuntu 24.04.2 LTS
+* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘metabolic/DESCRIPTION’ ... OK
+* checking for file ‘DFD/DESCRIPTION’ ... OK
...
-* checking data for non-ASCII characters ... NOTE
- Note: found 37 marked UTF-8 strings
-* checking LazyData ... OK
-* checking data for ASCII and uncompressed saves ... OK
-* checking examples ... OK
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘spelling.R’
+* this is package ‘DFD’ version ‘0.3.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘signatureSearch’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
* DONE
-Status: 2 NOTEs
+Status: 1 ERROR
```
-# multinma
+# dymo
-* Version: 0.8.1
-* GitHub: https://github.com/dmphillippo/multinma
-* Source code: https://github.com/cran/multinma
-* Date/Publication: 2025-05-31 00:00:02 UTC
-* Number of recursive dependencies: 149
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/dymo
+* Number of recursive dependencies: 38
-Run `revdepcheck::cloud_details(, "multinma")` for more info
+Run `revdepcheck::cloud_details(, "dymo")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# EcoEnsemble
+
+
+
+* Version: 1.1.2
+* GitHub: https://github.com/CefasRepRes/EcoEnsemble
+* Source code: https://github.com/cran/EcoEnsemble
+* Date/Publication: 2025-03-18 18:20:02 UTC
+* Number of recursive dependencies: 87
+
+Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info
## In both
-* checking whether package ‘multinma’ can be installed ... ERROR
+* checking whether package ‘EcoEnsemble’ can be installed ... ERROR
```
Installation failed.
- See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details.
```
## Installation
@@ -946,135 +919,68 @@ Run `revdepcheck::cloud_details(, "multinma")` for more info
### Devel
```
-* installing *source* package ‘multinma’ ...
-** package ‘multinma’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘EcoEnsemble’ ...
+** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++17
-g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o
In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
...
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
654 | return internal::first_aligned::alignment),Derived>(m);
| ^~~~~~~~~
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
-make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_survival_param.o] Error 1
-ERROR: compilation failed for package ‘multinma’
-* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1
+ERROR: compilation failed for package ‘EcoEnsemble’
+* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’
```
### CRAN
```
-* installing *source* package ‘multinma’ ...
-** package ‘multinma’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘EcoEnsemble’ ...
+** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++17
-g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o
In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
...
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
654 | return internal::first_aligned::alignment),Derived>(m);
| ^~~~~~~~~
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
-make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_survival_param.o] Error 1
-ERROR: compilation failed for package ‘multinma’
-* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’
-
-
-```
-# MultiTraits
-
-
-
-* Version: 0.5.0
-* GitHub: NA
-* Source code: https://github.com/cran/MultiTraits
-* Date/Publication: 2025-04-20 18:40:02 UTC
-* Number of recursive dependencies: 137
-
-Run `revdepcheck::cloud_details(, "MultiTraits")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘MultiTraits’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘MultiTraits’ ...
-** package ‘MultiTraits’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'ggtern', details:
- call: NULL
- error: object properties are invalid:
-- @lineend must be or , not S3
-Execution halted
-ERROR: lazy loading failed for package ‘MultiTraits’
-* removing ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/MultiTraits’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘MultiTraits’ ...
-** package ‘MultiTraits’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (MultiTraits)
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1
+ERROR: compilation failed for package ‘EcoEnsemble’
+* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’
```
-# OpenMx
+# EGAnet
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/OpenMx
-* Number of recursive dependencies: 159
+* Version: 2.3.0
+* GitHub: https://github.com/hfgolino/EGAnet
+* Source code: https://github.com/cran/EGAnet
+* Date/Publication: 2025-04-09 23:10:15 UTC
+* Number of recursive dependencies: 185
-Run `revdepcheck::cloud_details(, "OpenMx")` for more info
+Run `revdepcheck::cloud_details(, "EGAnet")` for more info
@@ -1083,7 +989,27 @@ Run `revdepcheck::cloud_details(, "OpenMx")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/EGAnet/new/EGAnet.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘EGAnet/DESCRIPTION’ ... OK
+...
+* this is package ‘EGAnet’ version ‘2.3.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘semPlot’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -1093,33 +1019,53 @@ Run `revdepcheck::cloud_details(, "OpenMx")` for more info
### CRAN
```
+* using log directory ‘/tmp/workdir/EGAnet/old/EGAnet.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘EGAnet/DESCRIPTION’ ... OK
+...
+* this is package ‘EGAnet’ version ‘2.3.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘semPlot’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
```
-# pacta.loanbook
+# fio
-* Version: 0.1.0
-* GitHub: https://github.com/RMI-PACTA/pacta.loanbook
-* Source code: https://github.com/cran/pacta.loanbook
-* Date/Publication: 2025-03-17 20:50:02 UTC
-* Number of recursive dependencies: 115
+* Version: 0.1.6
+* GitHub: https://github.com/albersonmiranda/fio
+* Source code: https://github.com/cran/fio
+* Date/Publication: 2025-04-06 07:50:02 UTC
+* Number of recursive dependencies: 85
-Run `revdepcheck::cloud_details(, "pacta.loanbook")` for more info
+Run `revdepcheck::cloud_details(, "fio")` for more info
## In both
-* checking whether package ‘pacta.loanbook’ can be installed ... ERROR
+* checking whether package ‘fio’ can be installed ... ERROR
```
Installation failed.
- See ‘/tmp/workdir/pacta.loanbook/new/pacta.loanbook.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/fio/new/fio.Rcheck/00install.out’ for details.
```
## Installation
@@ -1127,250 +1073,287 @@ Run `revdepcheck::cloud_details(, "pacta.loanbook")` for more info
### Devel
```
-* installing *source* package ‘pacta.loanbook’ ...
-** package ‘pacta.loanbook’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘fio’ ...
+** package ‘fio’ successfully unpacked and MD5 sums checked
** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error : 'market_share' is not an exported object from 'namespace:r2dii.plot'
-Error: unable to load R code in package ‘pacta.loanbook’
+Error in eval(ei, envir) :
+------------------ [UNSUPPORTED RUST VERSION]------------------
+- Minimum supported Rust version is 1.77.
+- Installed Rust version is 1.75.0.
+---------------------------------------------------------------
+Calls: source -> withVisible -> eval -> eval
Execution halted
-ERROR: lazy loading failed for package ‘pacta.loanbook’
-* removing ‘/tmp/workdir/pacta.loanbook/new/pacta.loanbook.Rcheck/pacta.loanbook’
+ERROR: configuration failed for package ‘fio’
+* removing ‘/tmp/workdir/fio/new/fio.Rcheck/fio’
```
### CRAN
```
-* installing *source* package ‘pacta.loanbook’ ...
-** package ‘pacta.loanbook’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘fio’ ...
+** package ‘fio’ successfully unpacked and MD5 sums checked
** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error : 'market_share' is not an exported object from 'namespace:r2dii.plot'
-Error: unable to load R code in package ‘pacta.loanbook’
+Error in eval(ei, envir) :
+------------------ [UNSUPPORTED RUST VERSION]------------------
+- Minimum supported Rust version is 1.77.
+- Installed Rust version is 1.75.0.
+---------------------------------------------------------------
+Calls: source -> withVisible -> eval -> eval
Execution halted
-ERROR: lazy loading failed for package ‘pacta.loanbook’
-* removing ‘/tmp/workdir/pacta.loanbook/old/pacta.loanbook.Rcheck/pacta.loanbook’
+ERROR: configuration failed for package ‘fio’
+* removing ‘/tmp/workdir/fio/old/fio.Rcheck/fio’
```
-# PieGlyph
+# GDINA
-* Version: 1.0.0
-* GitHub: https://github.com/rishvish/PieGlyph
-* Source code: https://github.com/cran/PieGlyph
-* Date/Publication: 2024-06-28 12:00:02 UTC
-* Number of recursive dependencies: 87
+* Version: 2.9.12
+* GitHub: https://github.com/Wenchao-Ma/GDINA
+* Source code: https://github.com/cran/GDINA
+* Date/Publication: 2025-07-02 17:00:02 UTC
+* Number of recursive dependencies: 147
-Run `revdepcheck::cloud_details(, "PieGlyph")` for more info
+Run `revdepcheck::cloud_details(, "GDINA")` for more info
-## Newly broken
-
-* checking whether package ‘PieGlyph’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘PieGlyph’ ...
-** package ‘PieGlyph’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'is.waive' not found
-Error: unable to load R code in package ‘PieGlyph’
-Execution halted
-ERROR: lazy loading failed for package ‘PieGlyph’
-* removing ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/PieGlyph’
+* using log directory ‘/tmp/workdir/GDINA/new/GDINA.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘GDINA/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
```
### CRAN
```
-* installing *source* package ‘PieGlyph’ ...
-** package ‘PieGlyph’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (PieGlyph)
+* using log directory ‘/tmp/workdir/GDINA/old/GDINA.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘GDINA/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
```
-# rmsb
+# genekitr
-* Version: 1.1-2
-* GitHub: NA
-* Source code: https://github.com/cran/rmsb
-* Date/Publication: 2025-04-13 16:30:02 UTC
-* Number of recursive dependencies: 136
+* Version: 1.2.8
+* GitHub: https://github.com/GangLiLab/genekitr
+* Source code: https://github.com/cran/genekitr
+* Date/Publication: 2024-09-06 13:00:06 UTC
+* Number of recursive dependencies: 201
-Run `revdepcheck::cloud_details(, "rmsb")` for more info
+Run `revdepcheck::cloud_details(, "genekitr")` for more info
-## In both
-
-* checking whether package ‘rmsb’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘rmsb’ ...
-** package ‘rmsb’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(x) : there is no package called ‘rstantools’
-Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘rmsb’
-* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’
+* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘genekitr/DESCRIPTION’ ... OK
+...
+* this is package ‘genekitr’ version ‘1.2.8’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-```
-### CRAN
-```
-* installing *source* package ‘rmsb’ ...
-** package ‘rmsb’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(x) : there is no package called ‘rstantools’
-Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘rmsb’
-* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’
-```
-# rshift
-
+```
+### CRAN
-* Version: 3.1.2
-* GitHub: https://github.com/alexhroom/rshift
-* Source code: https://github.com/cran/rshift
-* Date/Publication: 2025-04-06 18:40:02 UTC
-* Number of recursive dependencies: 34
+```
+* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘genekitr/DESCRIPTION’ ... OK
+...
+* this is package ‘genekitr’ version ‘1.2.8’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
-Run `revdepcheck::cloud_details(, "rshift")` for more info
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-
-## In both
-* checking whether package ‘rshift’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rshift/new/rshift.Rcheck/00install.out’ for details.
- ```
-## Installation
+
+```
+# GeneSelectR
+
+
+
+* Version: 1.0.1
+* GitHub: https://github.com/dzhakparov/GeneSelectR
+* Source code: https://github.com/cran/GeneSelectR
+* Date/Publication: 2024-02-03 14:00:05 UTC
+* Number of recursive dependencies: 187
+
+Run `revdepcheck::cloud_details(, "GeneSelectR")` for more info
+
+
+
+## Error before installation
### Devel
```
-* installing *source* package ‘rshift’ ...
-** package ‘rshift’ successfully unpacked and MD5 sums checked
-** using staged installation
-Using cargo 1.75.0
-Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball)
-Building for CRAN.
-Writing `src/Makevars`.
-`tools/config.R` has finished.
-** libs
-using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+* using log directory ‘/tmp/workdir/GeneSelectR/new/GeneSelectR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK
...
-export CARGO_HOME=/tmp/workdir/rshift/new/rshift.Rcheck/00_pkg_src/rshift/src/.cargo && \
-export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/root/.cargo/bin" && \
-RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
-error: failed to parse lock file at: /tmp/workdir/rshift/new/rshift.Rcheck/00_pkg_src/rshift/src/rust/Cargo.lock
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
-Caused by:
- lock file version 4 requires `-Znext-lockfile-bump`
-make: *** [Makevars:28: rust/target/release/librshift.a] Error 101
-ERROR: compilation failed for package ‘rshift’
-* removing ‘/tmp/workdir/rshift/new/rshift.Rcheck/rshift’
```
### CRAN
```
-* installing *source* package ‘rshift’ ...
-** package ‘rshift’ successfully unpacked and MD5 sums checked
-** using staged installation
-Using cargo 1.75.0
-Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball)
-Building for CRAN.
-Writing `src/Makevars`.
-`tools/config.R` has finished.
-** libs
-using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+* using log directory ‘/tmp/workdir/GeneSelectR/old/GeneSelectR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK
...
-export CARGO_HOME=/tmp/workdir/rshift/old/rshift.Rcheck/00_pkg_src/rshift/src/.cargo && \
-export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/root/.cargo/bin" && \
-RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
-error: failed to parse lock file at: /tmp/workdir/rshift/old/rshift.Rcheck/00_pkg_src/rshift/src/rust/Cargo.lock
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
-Caused by:
- lock file version 4 requires `-Znext-lockfile-bump`
-make: *** [Makevars:28: rust/target/release/librshift.a] Error 101
-ERROR: compilation failed for package ‘rshift’
-* removing ‘/tmp/workdir/rshift/old/rshift.Rcheck/rshift’
```
-# RSP
+# ggmosaic
-* Version: 0.4
-* GitHub: NA
-* Source code: https://github.com/cran/RSP
-* Date/Publication: 2023-09-24 21:00:02 UTC
-* Number of recursive dependencies: 243
+* Version: 0.3.3
+* GitHub: https://github.com/haleyjeppson/ggmosaic
+* Source code: https://github.com/cran/ggmosaic
+* Date/Publication: 2021-02-23 19:50:02 UTC
+* Number of recursive dependencies: 70
-Run `revdepcheck::cloud_details(, "RSP")` for more info
+Run `revdepcheck::cloud_details(, "ggmosaic")` for more info
## In both
-* checking whether package ‘RSP’ can be installed ... ERROR
+* checking whether package ‘ggmosaic’ can be installed ... ERROR
```
Installation failed.
- See ‘/tmp/workdir/RSP/new/RSP.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details.
```
## Installation
@@ -1378,193 +1361,3392 @@ Run `revdepcheck::cloud_details(, "RSP")` for more info
### Devel
```
-* installing *source* package ‘RSP’ ...
-** package ‘RSP’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘ggmosaic’ ...
+** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
** using staged installation
** R
+** data
+*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘OpenMx’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
+Error in get(x, envir = ns, inherits = FALSE) :
+ object 'is.waive' not found
+Error: unable to load R code in package ‘ggmosaic’
Execution halted
-ERROR: lazy loading failed for package ‘RSP’
-* removing ‘/tmp/workdir/RSP/new/RSP.Rcheck/RSP’
+ERROR: lazy loading failed for package ‘ggmosaic’
+* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’
```
### CRAN
```
-* installing *source* package ‘RSP’ ...
-** package ‘RSP’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘ggmosaic’ ...
+** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
** using staged installation
** R
+** data
+*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘OpenMx’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
+Error in get(x, envir = ns, inherits = FALSE) :
+ object 'is.waive' not found
+Error: unable to load R code in package ‘ggmosaic’
Execution halted
-ERROR: lazy loading failed for package ‘RSP’
-* removing ‘/tmp/workdir/RSP/old/RSP.Rcheck/RSP’
+ERROR: lazy loading failed for package ‘ggmosaic’
+* removing ‘/tmp/workdir/ggmosaic/old/ggmosaic.Rcheck/ggmosaic’
```
-# rstanarm
+# ggpicrust2
-* Version: 2.32.1
-* GitHub: https://github.com/stan-dev/rstanarm
-* Source code: https://github.com/cran/rstanarm
-* Date/Publication: 2024-01-18 23:00:03 UTC
-* Number of recursive dependencies: 139
+* Version: 2.5.2
+* GitHub: https://github.com/cafferychen777/ggpicrust2
+* Source code: https://github.com/cran/ggpicrust2
+* Date/Publication: 2025-08-25 23:00:02 UTC
+* Number of recursive dependencies: 296
-Run `revdepcheck::cloud_details(, "rstanarm")` for more info
+Run `revdepcheck::cloud_details(, "ggpicrust2")` for more info
-## In both
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/ggpicrust2/new/ggpicrust2.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ggpicrust2/DESCRIPTION’ ... OK
+...
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking R/sysdata.rda ... OK
+* checking examples ... OK
+* DONE
+Status: 2 NOTEs
+
-* checking whether package ‘rstanarm’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details.
- ```
-## Installation
-### Devel
```
-* installing *source* package ‘rstanarm’ ...
-** package ‘rstanarm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
-using C++17
-"/opt/R/4.4.0/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan
-Wrote C++ file "stan_files/bernoulli.cc"
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/ggpicrust2/old/ggpicrust2.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ggpicrust2/DESCRIPTION’ ... OK
+...
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking R/sysdata.rda ... OK
+* checking examples ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+# ggsem
+
+
+
+* Version: 0.2.4
+* GitHub: https://github.com/smin95/ggsem
+* Source code: https://github.com/cran/ggsem
+* Date/Publication: 2025-02-02 22:50:02 UTC
+* Number of recursive dependencies: 166
+
+Run `revdepcheck::cloud_details(, "ggsem")` for more info
+
+
+
+## Error before installation
+### Devel
+```
+* using log directory ‘/tmp/workdir/ggsem/new/ggsem.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ggsem/DESCRIPTION’ ... OK
...
-/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here
-/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stan_files/continuous.o] Error 1
-rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc
-ERROR: compilation failed for package ‘rstanarm’
-* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... OK
+* DONE
+Status: 1 NOTE
+
+
+
```
### CRAN
```
-* installing *source* package ‘rstanarm’ ...
-** package ‘rstanarm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
-using C++17
-"/opt/R/4.4.0/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan
-Wrote C++ file "stan_files/bernoulli.cc"
+* using log directory ‘/tmp/workdir/ggsem/old/ggsem.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ggsem/DESCRIPTION’ ... OK
+...
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... OK
+* DONE
+Status: 1 NOTE
+
-...
-/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here
-/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stan_files/continuous.o] Error 1
-rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc
-ERROR: compilation failed for package ‘rstanarm’
-* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’
```
-# scplot
+# ggtern
-* Version: 0.5.1
+* Version: 3.5.0
* GitHub: NA
-* Source code: https://github.com/cran/scplot
-* Date/Publication: 2025-03-01 13:10:03 UTC
-* Number of recursive dependencies: 114
+* Source code: https://github.com/cran/ggtern
+* Date/Publication: 2024-03-24 21:50:02 UTC
+* Number of recursive dependencies: 33
-Run `revdepcheck::cloud_details(, "scplot")` for more info
+Run `revdepcheck::cloud_details(, "ggtern")` for more info
-## Newly broken
+## In both
-* checking whether package ‘scplot’ can be installed ... ERROR
+* checking whether package ‘ggtern’ can be installed ... ERROR
```
Installation failed.
- See ‘/tmp/workdir/scplot/new/scplot.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details.
+ ```
+
+* checking package dependencies ... NOTE
```
+ Package which this enhances but not available for checking: ‘sp’
+ ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘ggtern’ ...
+** package ‘ggtern’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** data
+** demo
+** inst
+** byte-compile and prepare package for lazy loading
+Error in get(x, envir = ns, inherits = FALSE) :
+ object 'is.zero' not found
+Error: unable to load R code in package ‘ggtern’
+Execution halted
+ERROR: lazy loading failed for package ‘ggtern’
+* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘ggtern’ ...
+** package ‘ggtern’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** data
+** demo
+** inst
+** byte-compile and prepare package for lazy loading
+Error in get(x, envir = ns, inherits = FALSE) :
+ object 'is.zero' not found
+Error: unable to load R code in package ‘ggtern’
+Execution halted
+ERROR: lazy loading failed for package ‘ggtern’
+* removing ‘/tmp/workdir/ggtern/old/ggtern.Rcheck/ggtern’
+
+
+```
+# grandR
+
+
+
+* Version: 0.2.6
+* GitHub: https://github.com/erhard-lab/grandR
+* Source code: https://github.com/cran/grandR
+* Date/Publication: 2025-01-22 22:10:02 UTC
+* Number of recursive dependencies: 267
+
+Run `revdepcheck::cloud_details(, "grandR")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘grandR/DESCRIPTION’ ... OK
+...
+* checking line endings in C/C++/Fortran sources/headers ... OK
+* checking compiled code ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘grandR/DESCRIPTION’ ... OK
+...
+* checking line endings in C/C++/Fortran sources/headers ... OK
+* checking compiled code ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+# groupedHyperframe
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/groupedHyperframe
+* Number of recursive dependencies: 77
+
+Run `revdepcheck::cloud_details(, "groupedHyperframe")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# immcp
+
+
+
+* Version: 1.0.3
+* GitHub: https://github.com/YuanlongHu/immcp
+* Source code: https://github.com/cran/immcp
+* Date/Publication: 2022-05-12 05:50:02 UTC
+* Number of recursive dependencies: 187
+
+Run `revdepcheck::cloud_details(, "immcp")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘immcp/DESCRIPTION’ ... OK
+...
+* this is package ‘immcp’ version ‘1.0.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'clusterProfiler', 'arules'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘immcp/DESCRIPTION’ ... OK
+...
+* this is package ‘immcp’ version ‘1.0.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'clusterProfiler', 'arules'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# jmv
+
+
+
+* Version: 2.7.7
+* GitHub: https://github.com/jamovi/jmv
+* Source code: https://github.com/cran/jmv
+* Date/Publication: 2025-09-18 00:40:02 UTC
+* Number of recursive dependencies: 188
+
+Run `revdepcheck::cloud_details(, "jmv")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/jmv/new/jmv.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘jmv/DESCRIPTION’ ... OK
+...
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/jmv/old/jmv.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘jmv/DESCRIPTION’ ... OK
+...
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+# latentFactoR
+
+
+
+* Version: 0.0.6
+* GitHub: NA
+* Source code: https://github.com/cran/latentFactoR
+* Date/Publication: 2024-04-18 21:23:04 UTC
+* Number of recursive dependencies: 197
+
+Run `revdepcheck::cloud_details(, "latentFactoR")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/latentFactoR/new/latentFactoR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘latentFactoR/DESCRIPTION’ ... OK
+...
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* DONE
+Status: OK
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/latentFactoR/old/latentFactoR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘latentFactoR/DESCRIPTION’ ... OK
+...
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* DONE
+Status: OK
+
+
+
+
+
+```
+# lcsm
+
+
+
+* Version: 0.3.2
+* GitHub: https://github.com/milanwiedemann/lcsm
+* Source code: https://github.com/cran/lcsm
+* Date/Publication: 2023-02-25 23:40:02 UTC
+* Number of recursive dependencies: 137
+
+Run `revdepcheck::cloud_details(, "lcsm")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/lcsm/new/lcsm.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘lcsm/DESCRIPTION’ ... OK
+...
+* this is package ‘lcsm’ version ‘0.3.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘semPlot’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/lcsm/old/lcsm.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘lcsm/DESCRIPTION’ ... OK
+...
+* this is package ‘lcsm’ version ‘0.3.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘semPlot’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# manymome
+
+
+
+* Version: 0.3.1
+* GitHub: https://github.com/sfcheung/manymome
+* Source code: https://github.com/cran/manymome
+* Date/Publication: 2025-08-22 05:40:02 UTC
+* Number of recursive dependencies: 158
+
+Run `revdepcheck::cloud_details(, "manymome")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/manymome/new/manymome.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘manymome/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/manymome/old/manymome.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘manymome/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+# ModStatR
+
+
+
+* Version: 1.4.1
+* GitHub: https://github.com/fbertran/ModStatR
+* Source code: https://github.com/cran/ModStatR
+* Date/Publication: 2025-09-12 22:50:26 UTC
+* Number of recursive dependencies: 306
+
+Run `revdepcheck::cloud_details(, "ModStatR")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/ModStatR/new/ModStatR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ModStatR/DESCRIPTION’ ... OK
+...
+* checking data for non-ASCII characters ... NOTE
+ Note: found 20578 marked UTF-8 strings
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/ModStatR/old/ModStatR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ModStatR/DESCRIPTION’ ... OK
+...
+* checking data for non-ASCII characters ... NOTE
+ Note: found 20578 marked UTF-8 strings
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+# multinma
+
+
+
+* Version: 0.8.1
+* GitHub: https://github.com/dmphillippo/multinma
+* Source code: https://github.com/cran/multinma
+* Date/Publication: 2025-05-31 00:00:02 UTC
+* Number of recursive dependencies: 150
+
+Run `revdepcheck::cloud_details(, "multinma")` for more info
+
+
+
+## In both
+
+* checking whether package ‘multinma’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details.
+ ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘multinma’ ...
+** package ‘multinma’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
+...
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
+/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
+ 654 | return internal::first_aligned::alignment),Derived>(m);
+ | ^~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_survival_param.o] Error 1
+ERROR: compilation failed for package ‘multinma’
+* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘multinma’ ...
+** package ‘multinma’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
+...
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
+/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
+ 654 | return internal::first_aligned::alignment),Derived>(m);
+ | ^~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_survival_param.o] Error 1
+ERROR: compilation failed for package ‘multinma’
+* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’
+
+
+```
+# neatStats
+
+
+
+* Version: 1.13.5
+* GitHub: https://github.com/gasparl/neatstats
+* Source code: https://github.com/cran/neatStats
+* Date/Publication: 2025-08-21 08:30:02 UTC
+* Number of recursive dependencies: 131
+
+Run `revdepcheck::cloud_details(, "neatStats")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/neatStats/new/neatStats.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘neatStats/DESCRIPTION’ ... OK
+...
+* this is package ‘neatStats’ version ‘1.13.5’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/neatStats/old/neatStats.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘neatStats/DESCRIPTION’ ... OK
+...
+* this is package ‘neatStats’ version ‘1.13.5’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# negligible
+
+
+
+* Version: 0.1.9
+* GitHub: NA
+* Source code: https://github.com/cran/negligible
+* Date/Publication: 2024-09-09 15:20:02 UTC
+* Number of recursive dependencies: 147
+
+Run `revdepcheck::cloud_details(, "negligible")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/negligible/new/negligible.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘negligible/DESCRIPTION’ ... OK
+...
+* this is package ‘negligible’ version ‘0.1.9’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/negligible/old/negligible.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘negligible/DESCRIPTION’ ... OK
+...
+* this is package ‘negligible’ version ‘0.1.9’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# numbat
+
+
+
+* Version: 1.5.1
+* GitHub: https://github.com/kharchenkolab/numbat
+* Source code: https://github.com/cran/numbat
+* Date/Publication: 2025-10-21 17:00:02 UTC
+* Number of recursive dependencies: 144
+
+Run `revdepcheck::cloud_details(, "numbat")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/numbat/new/numbat.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘numbat/DESCRIPTION’ ... OK
+...
+* this is package ‘numbat’ version ‘1.5.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'ggtree', 'scistreer'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/numbat/old/numbat.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘numbat/DESCRIPTION’ ... OK
+...
+* this is package ‘numbat’ version ‘1.5.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'ggtree', 'scistreer'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# OlinkAnalyze
+
+
+
+* Version: 4.3.2
+* GitHub: https://github.com/Olink-Proteomics/OlinkRPackage
+* Source code: https://github.com/cran/OlinkAnalyze
+* Date/Publication: 2025-09-24 22:20:09 UTC
+* Number of recursive dependencies: 214
+
+Run `revdepcheck::cloud_details(, "OlinkAnalyze")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+# OpenMx
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/OpenMx
+* Number of recursive dependencies: 151
+
+Run `revdepcheck::cloud_details(, "OpenMx")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# parameters
+
+
+
+* Version: 0.28.2
+* GitHub: https://github.com/easystats/parameters
+* Source code: https://github.com/cran/parameters
+* Date/Publication: 2025-09-10 15:50:02 UTC
+* Number of recursive dependencies: 480
+
+Run `revdepcheck::cloud_details(, "parameters")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/parameters/new/parameters.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘parameters/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/parameters/old/parameters.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘parameters/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+# pctax
+
+
+
+* Version: 0.1.3
+* GitHub: https://github.com/Asa12138/pctax
+* Source code: https://github.com/cran/pctax
+* Date/Publication: 2024-12-02 10:00:02 UTC
+* Number of recursive dependencies: 255
+
+Run `revdepcheck::cloud_details(, "pctax")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/pctax/new/pctax.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘pctax/DESCRIPTION’ ... OK
+...
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/pctax/old/pctax.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘pctax/DESCRIPTION’ ... OK
+...
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+# phylosem
+
+
+
+* Version: 1.1.4
+* GitHub: https://github.com/James-Thorson-NOAA/phylosem
+* Source code: https://github.com/cran/phylosem
+* Date/Publication: 2024-04-02 21:15:03 UTC
+* Number of recursive dependencies: 216
+
+Run `revdepcheck::cloud_details(, "phylosem")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/phylosem/new/phylosem.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘phylosem/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/phylosem/old/phylosem.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘phylosem/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+# predictionInterval
+
+
+
+* Version: 1.0.0
+* GitHub: NA
+* Source code: https://github.com/cran/predictionInterval
+* Date/Publication: 2016-08-20 15:39:24
+* Number of recursive dependencies: 49
+
+Run `revdepcheck::cloud_details(, "predictionInterval")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/predictionInterval/new/predictionInterval.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘predictionInterval/DESCRIPTION’ ... OK
+...
+* checking extension type ... Package
+* this is package ‘predictionInterval’ version ‘1.0.0’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/predictionInterval/old/predictionInterval.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘predictionInterval/DESCRIPTION’ ... OK
+...
+* checking extension type ... Package
+* this is package ‘predictionInterval’ version ‘1.0.0’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# psychonetrics
+
+
+
+* Version: 0.13.2
+* GitHub: https://github.com/SachaEpskamp/psychonetrics
+* Source code: https://github.com/cran/psychonetrics
+* Date/Publication: 2025-10-22 05:10:02 UTC
+* Number of recursive dependencies: 140
+
+Run `revdepcheck::cloud_details(, "psychonetrics")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/psychonetrics/new/psychonetrics.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘psychonetrics/DESCRIPTION’ ... OK
+...
+* checking line endings in C/C++/Fortran sources/headers ... OK
+* checking line endings in Makefiles ... OK
+* checking compilation flags in Makevars ... OK
+* checking for GNU extensions in Makefiles ... OK
+* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
+* checking use of PKG_*FLAGS in Makefiles ... OK
+* checking compiled code ... OK
+* checking examples ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/psychonetrics/old/psychonetrics.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘psychonetrics/DESCRIPTION’ ... OK
+...
+* checking line endings in C/C++/Fortran sources/headers ... OK
+* checking line endings in Makefiles ... OK
+* checking compilation flags in Makevars ... OK
+* checking for GNU extensions in Makefiles ... OK
+* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
+* checking use of PKG_*FLAGS in Makefiles ... OK
+* checking compiled code ... OK
+* checking examples ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+# psycModel
+
+
+
+* Version: 0.5.0
+* GitHub: https://github.com/jasonmoy28/psycModel
+* Source code: https://github.com/cran/psycModel
+* Date/Publication: 2023-11-01 06:00:02 UTC
+* Number of recursive dependencies: 203
+
+Run `revdepcheck::cloud_details(, "psycModel")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/psycModel/new/psycModel.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘psycModel/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/psycModel/old/psycModel.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘psycModel/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+# pubh
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/pubh
+* Number of recursive dependencies: 156
+
+Run `revdepcheck::cloud_details(, "pubh")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# rattle
+
+
+
+* Version: 5.5.1
+* GitHub: NA
+* Source code: https://github.com/cran/rattle
+* Date/Publication: 2022-03-21 13:10:02 UTC
+* Number of recursive dependencies: 218
+
+Run `revdepcheck::cloud_details(, "rattle")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/rattle/new/rattle.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘rattle/DESCRIPTION’ ... OK
+...
+--- failed re-building ‘rattle.Rnw’
+
+SUMMARY: processing the following file failed:
+ ‘rattle.Rnw’
+
+Error: Vignette re-building failed.
+Execution halted
+
+* DONE
+Status: 1 WARNING, 3 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/rattle/old/rattle.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘rattle/DESCRIPTION’ ... OK
+...
+--- failed re-building ‘rattle.Rnw’
+
+SUMMARY: processing the following file failed:
+ ‘rattle.Rnw’
+
+Error: Vignette re-building failed.
+Execution halted
+
+* DONE
+Status: 1 WARNING, 3 NOTEs
+
+
+
+
+
+```
+# ReporterScore
+
+
+
+* Version: 0.1.9
+* GitHub: https://github.com/Asa12138/ReporterScore
+* Source code: https://github.com/cran/ReporterScore
+* Date/Publication: 2024-11-28 14:10:06 UTC
+* Number of recursive dependencies: 252
+
+Run `revdepcheck::cloud_details(, "ReporterScore")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/ReporterScore/new/ReporterScore.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ReporterScore/DESCRIPTION’ ... OK
+...
+* checking data for non-ASCII characters ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/ReporterScore/old/ReporterScore.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ReporterScore/DESCRIPTION’ ... OK
+...
+* checking data for non-ASCII characters ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+# Revticulate
+
+
+
+* Version: 1.0.0
+* GitHub: NA
+* Source code: https://github.com/cran/Revticulate
+* Date/Publication: 2022-03-15 23:30:07 UTC
+* Number of recursive dependencies: 176
+
+Run `revdepcheck::cloud_details(, "Revticulate")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/Revticulate/new/Revticulate.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘Revticulate/DESCRIPTION’ ... OK
+...
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/Revticulate/old/Revticulate.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘Revticulate/DESCRIPTION’ ... OK
+...
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
+```
+# rmsb
+
+
+
+* Version: 1.1-2
+* GitHub: NA
+* Source code: https://github.com/cran/rmsb
+* Date/Publication: 2025-04-13 16:30:02 UTC
+* Number of recursive dependencies: 135
+
+Run `revdepcheck::cloud_details(, "rmsb")` for more info
+
+
+
+## In both
+
+* checking whether package ‘rmsb’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details.
+ ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘rmsb’ ...
+** package ‘rmsb’ successfully unpacked and MD5 sums checked
+** using staged installation
+Error in loadNamespace(x) : there is no package called ‘rstantools’
+Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
+Execution halted
+ERROR: configuration failed for package ‘rmsb’
+* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘rmsb’ ...
+** package ‘rmsb’ successfully unpacked and MD5 sums checked
+** using staged installation
+Error in loadNamespace(x) : there is no package called ‘rstantools’
+Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
+Execution halted
+ERROR: configuration failed for package ‘rmsb’
+* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’
+
+
+```
+# Rnest
+
+
+
+* Version: 1.2
+* GitHub: NA
+* Source code: https://github.com/cran/Rnest
+* Date/Publication: 2025-06-19 13:40:02 UTC
+* Number of recursive dependencies: 86
+
+Run `revdepcheck::cloud_details(, "Rnest")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/Rnest/new/Rnest.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘Rnest/DESCRIPTION’ ... OK
+...
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* DONE
+Status: OK
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/Rnest/old/Rnest.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘Rnest/DESCRIPTION’ ... OK
+...
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* DONE
+Status: OK
+
+
+
+
+
+```
+# rosetta
+
+
+
+* Version: 0.3.12
+* GitHub: NA
+* Source code: https://github.com/cran/rosetta
+* Date/Publication: 2023-03-05 22:00:02 UTC
+* Number of recursive dependencies: 173
+
+Run `revdepcheck::cloud_details(, "rosetta")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/rosetta/new/rosetta.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘rosetta/DESCRIPTION’ ... OK
+...
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/rosetta/old/rosetta.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘rosetta/DESCRIPTION’ ... OK
+...
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+# rSDR
+
+
+
+* Version: 1.0.2.1
+* GitHub: NA
+* Source code: https://github.com/cran/rSDR
+* Date/Publication: 2025-10-28 08:20:08 UTC
+* Number of recursive dependencies: 149
+
+Run `revdepcheck::cloud_details(, "rSDR")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/rSDR/new/rSDR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘rSDR/DESCRIPTION’ ... OK
+...
+--- failed re-building ‘rSDR_vignette.Rmd’
+
+SUMMARY: processing the following file failed:
+ ‘rSDR_vignette.Rmd’
+
+Error: Vignette re-building failed.
+Execution halted
+
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/rSDR/old/rSDR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘rSDR/DESCRIPTION’ ... OK
+...
+--- failed re-building ‘rSDR_vignette.Rmd’
+
+SUMMARY: processing the following file failed:
+ ‘rSDR_vignette.Rmd’
+
+Error: Vignette re-building failed.
+Execution halted
+
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# rshift
+
+
+
+* Version: 3.1.2
+* GitHub: https://github.com/alexhroom/rshift
+* Source code: https://github.com/cran/rshift
+* Date/Publication: 2025-04-06 18:40:02 UTC
+* Number of recursive dependencies: 30
+
+Run `revdepcheck::cloud_details(, "rshift")` for more info
+
+
+
+## In both
+
+* checking whether package ‘rshift’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/rshift/new/rshift.Rcheck/00install.out’ for details.
+ ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘rshift’ ...
+** package ‘rshift’ successfully unpacked and MD5 sums checked
+** using staged installation
+Using cargo 1.75.0
+Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball)
+Building for CRAN.
+Writing `src/Makevars`.
+`tools/config.R` has finished.
+** libs
+using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+...
+export CARGO_HOME=/tmp/workdir/rshift/new/rshift.Rcheck/00_pkg_src/rshift/src/.cargo && \
+export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/root/.cargo/bin" && \
+RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
+error: failed to parse lock file at: /tmp/workdir/rshift/new/rshift.Rcheck/00_pkg_src/rshift/src/rust/Cargo.lock
+
+Caused by:
+ lock file version 4 requires `-Znext-lockfile-bump`
+make: *** [Makevars:28: rust/target/release/librshift.a] Error 101
+ERROR: compilation failed for package ‘rshift’
+* removing ‘/tmp/workdir/rshift/new/rshift.Rcheck/rshift’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘rshift’ ...
+** package ‘rshift’ successfully unpacked and MD5 sums checked
+** using staged installation
+Using cargo 1.75.0
+Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball)
+Building for CRAN.
+Writing `src/Makevars`.
+`tools/config.R` has finished.
+** libs
+using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+...
+export CARGO_HOME=/tmp/workdir/rshift/old/rshift.Rcheck/00_pkg_src/rshift/src/.cargo && \
+export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/root/.cargo/bin" && \
+RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
+error: failed to parse lock file at: /tmp/workdir/rshift/old/rshift.Rcheck/00_pkg_src/rshift/src/rust/Cargo.lock
+
+Caused by:
+ lock file version 4 requires `-Znext-lockfile-bump`
+make: *** [Makevars:28: rust/target/release/librshift.a] Error 101
+ERROR: compilation failed for package ‘rshift’
+* removing ‘/tmp/workdir/rshift/old/rshift.Rcheck/rshift’
+
+
+```
+# rstanarm
+
+
+
+* Version: 2.32.2
+* GitHub: https://github.com/stan-dev/rstanarm
+* Source code: https://github.com/cran/rstanarm
+* Date/Publication: 2025-09-30 08:00:02 UTC
+* Number of recursive dependencies: 141
+
+Run `revdepcheck::cloud_details(, "rstanarm")` for more info
+
+
+
+## In both
+
+* checking whether package ‘rstanarm’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details.
+ ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘rstanarm’ ...
+** package ‘rstanarm’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/StanHeaders/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c init.cpp -o init.o
+
+...
+/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:91:0: required from ‘void stan::math::internal::quad_form_vari::chain() [with Ta = double; int Ra = -1; int Ca = -1; Tb = stan::math::var_value; int Rb = -1; int Cb = 1]’
+/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here
+/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
+ 654 | return internal::first_aligned::alignment),Derived>(m);
+ | ^~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_continuous.o] Error 1
+ERROR: compilation failed for package ‘rstanarm’
+* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘rstanarm’ ...
+** package ‘rstanarm’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/StanHeaders/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c init.cpp -o init.o
+
+...
+/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:91:0: required from ‘void stan::math::internal::quad_form_vari::chain() [with Ta = double; int Ra = -1; int Ca = -1; Tb = stan::math::var_value; int Rb = -1; int Cb = 1]’
+/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here
+/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
+ 654 | return internal::first_aligned::alignment),Derived>(m);
+ | ^~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_continuous.o] Error 1
+ERROR: compilation failed for package ‘rstanarm’
+* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’
+
+
+```
+# RVA
+
+
+
+* Version: 0.0.5
+* GitHub: https://github.com/THERMOSTATS/RVA
+* Source code: https://github.com/cran/RVA
+* Date/Publication: 2021-11-01 21:40:02 UTC
+* Number of recursive dependencies: 213
+
+Run `revdepcheck::cloud_details(, "RVA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘RVA/DESCRIPTION’ ... OK
+...
+* this is package ‘RVA’ version ‘0.0.5’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘RVA/DESCRIPTION’ ... OK
+...
+* this is package ‘RVA’ version ‘0.0.5’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# SCpubr
+
+
+
+* Version: 3.0.0
+* GitHub: https://github.com/enblacar/SCpubr
+* Source code: https://github.com/cran/SCpubr
+* Date/Publication: 2025-08-20 08:40:02 UTC
+* Number of recursive dependencies: 293
+
+Run `revdepcheck::cloud_details(, "SCpubr")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘SCpubr/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘SCpubr/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+# semtree
+
+
+
+* Version: 0.9.22
+* GitHub: https://github.com/brandmaier/semtree
+* Source code: https://github.com/cran/semtree
+* Date/Publication: 2025-07-28 11:20:02 UTC
+* Number of recursive dependencies: 123
+
+Run `revdepcheck::cloud_details(, "semtree")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/semtree/new/semtree.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘semtree/DESCRIPTION’ ... OK
+...
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘OpenMx’
+
+Package suggested but not available for checking: ‘ctsemOMX’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/semtree/old/semtree.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘semtree/DESCRIPTION’ ... OK
+...
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘OpenMx’
+
+Package suggested but not available for checking: ‘ctsemOMX’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# sprtt
+
+
+
+* Version: 0.2.0
+* GitHub: https://github.com/MeikeSteinhilber/sprtt
+* Source code: https://github.com/cran/sprtt
+* Date/Publication: 2023-07-06 13:50:02 UTC
+* Number of recursive dependencies: 147
+
+Run `revdepcheck::cloud_details(, "sprtt")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/sprtt/new/sprtt.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘sprtt/DESCRIPTION’ ... OK
+...
+* this is package ‘sprtt’ version ‘0.2.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/sprtt/old/sprtt.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘sprtt/DESCRIPTION’ ... OK
+...
+* this is package ‘sprtt’ version ‘0.2.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# StatTeacherAssistant
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/StatTeacherAssistant
+* Number of recursive dependencies: 123
+
+Run `revdepcheck::cloud_details(, "StatTeacherAssistant")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# stelfi
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/stelfi
+* Number of recursive dependencies: 101
+
+Run `revdepcheck::cloud_details(, "stelfi")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# streamDAG
+
+
+
+* Version: 1.6
+* GitHub: NA
+* Source code: https://github.com/cran/streamDAG
+* Date/Publication: 2025-10-16 15:30:02 UTC
+* Number of recursive dependencies: 142
+
+Run `revdepcheck::cloud_details(, "streamDAG")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘streamDAG/DESCRIPTION’ ... OK
+* this is package ‘streamDAG’ version ‘1.6’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘asbio’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘streamDAG/DESCRIPTION’ ... OK
+* this is package ‘streamDAG’ version ‘1.6’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘asbio’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# SurprisalAnalysis
+
+
+
+* Version: 0.2
+* GitHub: NA
+* Source code: https://github.com/cran/SurprisalAnalysis
+* Date/Publication: 2025-09-10 08:30:13 UTC
+* Number of recursive dependencies: 208
+
+Run `revdepcheck::cloud_details(, "SurprisalAnalysis")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/SurprisalAnalysis/new/SurprisalAnalysis.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘SurprisalAnalysis/DESCRIPTION’ ... OK
+...
+* this is package ‘SurprisalAnalysis’ version ‘0.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/SurprisalAnalysis/old/SurprisalAnalysis.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘SurprisalAnalysis/DESCRIPTION’ ... OK
+...
+* this is package ‘SurprisalAnalysis’ version ‘0.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# Surrogate
+
+
+
+* Version: 3.4.1
+* GitHub: https://github.com/florianstijven/Surrogate-development
+* Source code: https://github.com/cran/Surrogate
+* Date/Publication: 2025-04-29 04:40:02 UTC
+* Number of recursive dependencies: 192
+
+Run `revdepcheck::cloud_details(, "Surrogate")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/Surrogate/new/Surrogate.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘Surrogate/DESCRIPTION’ ... OK
+...
+* this is package ‘Surrogate’ version ‘3.4.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/Surrogate/old/Surrogate.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘Surrogate/DESCRIPTION’ ... OK
+...
+* this is package ‘Surrogate’ version ‘3.4.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# tabledown
+
+
+
+* Version: 1.0.0
+* GitHub: https://github.com/masiraji/tabledown
+* Source code: https://github.com/cran/tabledown
+* Date/Publication: 2024-05-02 13:40:03 UTC
+* Number of recursive dependencies: 166
+
+Run `revdepcheck::cloud_details(, "tabledown")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/tabledown/new/tabledown.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tabledown/DESCRIPTION’ ... OK
+...
+* checking if there is a namespace ... OK
+* checking for executable files ... OK
+* checking for hidden files and directories ... OK
+* checking for portable file names ... OK
+* checking for sufficient/correct file permissions ... OK
+* checking whether package ‘tabledown’ can be installed ... ERROR
+Installation failed.
+See ‘/tmp/workdir/tabledown/new/tabledown.Rcheck/00install.out’ for details.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/tabledown/old/tabledown.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tabledown/DESCRIPTION’ ... OK
+...
+* checking if there is a namespace ... OK
+* checking for executable files ... OK
+* checking for hidden files and directories ... OK
+* checking for portable file names ... OK
+* checking for sufficient/correct file permissions ... OK
+* checking whether package ‘tabledown’ can be installed ... ERROR
+Installation failed.
+See ‘/tmp/workdir/tabledown/old/tabledown.Rcheck/00install.out’ for details.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# TELP
+
+
+
+* Version: 1.0.3
+* GitHub: NA
+* Source code: https://github.com/cran/TELP
+* Date/Publication: 2025-05-09 15:00:05 UTC
+* Number of recursive dependencies: 109
+
+Run `revdepcheck::cloud_details(, "TELP")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/TELP/new/TELP.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TELP/DESCRIPTION’ ... OK
+...
+* checking extension type ... Package
+* this is package ‘TELP’ version ‘1.0.3’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'arules', 'arulesViz'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/TELP/old/TELP.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TELP/DESCRIPTION’ ... OK
+...
+* checking extension type ... Package
+* this is package ‘TELP’ version ‘1.0.3’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'arules', 'arulesViz'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# TestAnaAPP
+
+
+
+* Version: 1.1.2
+* GitHub: https://github.com/jiangyouxiang/TestAnaAPP
+* Source code: https://github.com/cran/TestAnaAPP
+* Date/Publication: 2024-11-09 04:00:02 UTC
+* Number of recursive dependencies: 264
+
+Run `revdepcheck::cloud_details(, "TestAnaAPP")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TestAnaAPP/DESCRIPTION’ ... OK
+...
+* this is package ‘TestAnaAPP’ version ‘1.1.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘semPlot’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/TestAnaAPP/old/TestAnaAPP.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TestAnaAPP/DESCRIPTION’ ... OK
+...
+* this is package ‘TestAnaAPP’ version ‘1.1.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘semPlot’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# tidybins
+
+
+
+* Version: 0.1.1
+* GitHub: https://github.com/Harrison4192/tidybins
+* Source code: https://github.com/cran/tidybins
+* Date/Publication: 2024-06-12 04:50:02 UTC
+* Number of recursive dependencies: 222
+
+Run `revdepcheck::cloud_details(, "tidybins")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/tidybins/new/tidybins.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidybins/DESCRIPTION’ ... OK
+...
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/tidybins/old/tidybins.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidybins/DESCRIPTION’ ... OK
+...
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+# tidycomm
+
+
+
+* Version: 0.4.2
+* GitHub: https://github.com/tidycomm/tidycomm
+* Source code: https://github.com/cran/tidycomm
+* Date/Publication: 2025-08-27 12:00:02 UTC
+* Number of recursive dependencies: 141
+
+Run `revdepcheck::cloud_details(, "tidycomm")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/tidycomm/new/tidycomm.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidycomm/DESCRIPTION’ ... OK
+...
+* this is package ‘tidycomm’ version ‘0.4.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-## Installation
-### Devel
-```
-* installing *source* package ‘scplot’ ...
-** package ‘scplot’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0.
-ℹ Please use the `linewidth` argument instead.
-ℹ The deprecated feature was likely used in the scplot package.
- Please report the issue to the authors.
-Error in `class<-`(`*tmp*`, value = "list") :
- cannot coerce type 'object' to vector of type 'list'
-Error: unable to load R code in package ‘scplot’
-Execution halted
-ERROR: lazy loading failed for package ‘scplot’
-* removing ‘/tmp/workdir/scplot/new/scplot.Rcheck/scplot’
```
### CRAN
```
-* installing *source* package ‘scplot’ ...
-** package ‘scplot’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (scplot)
+* using log directory ‘/tmp/workdir/tidycomm/old/tidycomm.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidycomm/DESCRIPTION’ ... OK
+...
+* this is package ‘tidycomm’ version ‘0.4.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
```
-# StatTeacherAssistant
+# tidySEM
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/StatTeacherAssistant
-* Number of recursive dependencies: 123
+* Version: 0.2.9
+* GitHub: https://github.com/cjvanlissa/tidySEM
+* Source code: https://github.com/cran/tidySEM
+* Date/Publication: 2025-07-30 18:20:02 UTC
+* Number of recursive dependencies: 222
-Run `revdepcheck::cloud_details(, "StatTeacherAssistant")` for more info
+Run `revdepcheck::cloud_details(, "tidySEM")` for more info
@@ -1573,7 +4755,27 @@ Run `revdepcheck::cloud_details(, "StatTeacherAssistant")` for more info
### Devel
```
-
+* using log directory ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidySEM/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
@@ -1583,24 +4785,44 @@ Run `revdepcheck::cloud_details(, "StatTeacherAssistant")` for more info
### CRAN
```
-
+* using log directory ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidySEM/DESCRIPTION’ ... OK
+...
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes ... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
```
-# streamDAG
+# tinyarray
-* Version: 1.5-9
-* GitHub: NA
-* Source code: https://github.com/cran/streamDAG
-* Date/Publication: 2025-01-14 21:50:02 UTC
-* Number of recursive dependencies: 137
+* Version: 2.4.3
+* GitHub: https://github.com/xjsun1221/tinyarray
+* Source code: https://github.com/cran/tinyarray
+* Date/Publication: 2025-03-05 13:20:02 UTC
+* Number of recursive dependencies: 252
-Run `revdepcheck::cloud_details(, "streamDAG")` for more info
+Run `revdepcheck::cloud_details(, "tinyarray")` for more info
@@ -1609,20 +4831,22 @@ Run `revdepcheck::cloud_details(, "streamDAG")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’
+* using log directory ‘/tmp/workdir/tinyarray/new/tinyarray.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
-* running under: Ubuntu 24.04.2 LTS
+* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘streamDAG/DESCRIPTION’ ... OK
-* this is package ‘streamDAG’ version ‘1.5-9’
+* checking for file ‘tinyarray/DESCRIPTION’ ... OK
+...
+* this is package ‘tinyarray’ version ‘2.4.3’
+* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘asbio’
+Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -1637,20 +4861,22 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’
+* using log directory ‘/tmp/workdir/tinyarray/old/tinyarray.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
-* running under: Ubuntu 24.04.2 LTS
+* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘streamDAG/DESCRIPTION’ ... OK
-* this is package ‘streamDAG’ version ‘1.5-9’
+* checking for file ‘tinyarray/DESCRIPTION’ ... OK
+...
+* this is package ‘tinyarray’ version ‘2.4.3’
+* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘asbio’
+Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -1662,125 +4888,79 @@ Status: 1 ERROR
```
-# TestAnaAPP
+# TransProR
-* Version: 1.1.2
-* GitHub: https://github.com/jiangyouxiang/TestAnaAPP
-* Source code: https://github.com/cran/TestAnaAPP
-* Date/Publication: 2024-11-09 04:00:02 UTC
-* Number of recursive dependencies: 263
+* Version: 1.0.7
+* GitHub: https://github.com/SSSYDYSSS/TransProR
+* Source code: https://github.com/cran/TransProR
+* Date/Publication: 2025-09-12 12:10:02 UTC
+* Number of recursive dependencies: 196
-Run `revdepcheck::cloud_details(, "TestAnaAPP")` for more info
+Run `revdepcheck::cloud_details(, "TransProR")` for more info
-## In both
-
-* checking whether package ‘TestAnaAPP’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘TestAnaAPP’ ...
-** package ‘TestAnaAPP’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘OpenMx’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘TestAnaAPP’
-* removing ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck/TestAnaAPP’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘TestAnaAPP’ ...
-** package ‘TestAnaAPP’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘OpenMx’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘TestAnaAPP’
-* removing ‘/tmp/workdir/TestAnaAPP/old/TestAnaAPP.Rcheck/TestAnaAPP’
-
+* using log directory ‘/tmp/workdir/TransProR/new/TransProR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TransProR/DESCRIPTION’ ... OK
+...
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘ggtree’
-```
-# tidydr
+Package suggested but not available for checking: ‘ggtreeExtra’
-
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-* Version: 0.0.5
-* GitHub: https://github.com/YuLab-SMU/tidydr
-* Source code: https://github.com/cran/tidydr
-* Date/Publication: 2023-03-08 09:20:02 UTC
-* Number of recursive dependencies: 75
-Run `revdepcheck::cloud_details(, "tidydr")` for more info
-
-## Newly broken
-* checking whether package ‘tidydr’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details.
- ```
+```
+### CRAN
-## Installation
+```
+* using log directory ‘/tmp/workdir/TransProR/old/TransProR.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TransProR/DESCRIPTION’ ... OK
+...
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘ggtree’
-### Devel
+Package suggested but not available for checking: ‘ggtreeExtra’
-```
-* installing *source* package ‘tidydr’ ...
-** package ‘tidydr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'len0_null' not found
-Error: unable to load R code in package ‘tidydr’
-Execution halted
-ERROR: lazy loading failed for package ‘tidydr’
-* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-```
-### CRAN
-```
-* installing *source* package ‘tidydr’ ...
-** package ‘tidydr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (tidydr)
```
@@ -1792,13 +4972,13 @@ ERROR: lazy loading failed for package ‘tidydr’
* GitHub: https://github.com/jschoeley/tricolore
* Source code: https://github.com/cran/tricolore
* Date/Publication: 2024-05-15 15:00:02 UTC
-* Number of recursive dependencies: 104
+* Number of recursive dependencies: 103
Run `revdepcheck::cloud_details(, "tricolore")` for more info
-## Newly broken
+## In both
* checking whether package ‘tricolore’ can be installed ... ERROR
```
@@ -1806,13 +4986,6 @@ Run `revdepcheck::cloud_details(, "tricolore")` for more info
See ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/00install.out’ for details.
```
-## Newly fixed
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 2 marked UTF-8 strings
- ```
-
## Installation
### Devel
@@ -1847,14 +5020,13 @@ ERROR: lazy loading failed for package ‘tricolore’
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (tricolore)
+Error: .onLoad failed in loadNamespace() for 'ggtern', details:
+ call: NULL
+ error: object properties are invalid:
+- @lineend must be or , not S3
+Execution halted
+ERROR: lazy loading failed for package ‘tricolore’
+* removing ‘/tmp/workdir/tricolore/old/tricolore.Rcheck/tricolore’
```
@@ -1862,11 +5034,11 @@ ERROR: lazy loading failed for package ‘tricolore’
-* Version: 1.0.2
+* Version: 1.0.3
* GitHub: https://github.com/alexander-pastukhov/tridim-regression
* Source code: https://github.com/cran/TriDimRegression
-* Date/Publication: 2023-09-13 14:10:03 UTC
-* Number of recursive dependencies: 95
+* Date/Publication: 2025-10-09 16:50:02 UTC
+* Number of recursive dependencies: 91
Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info
@@ -1910,77 +5082,79 @@ ERROR: configuration failed for package ‘TriDimRegression’
```
-# xpose
+# ufs
-* Version: 0.4.19
-* GitHub: https://github.com/UUPharmacometrics/xpose
-* Source code: https://github.com/cran/xpose
-* Date/Publication: 2025-01-07 20:00:02 UTC
-* Number of recursive dependencies: 104
+* Version: 25.7.1
+* GitHub: NA
+* Source code: https://github.com/cran/ufs
+* Date/Publication: 2025-07-29 12:10:02 UTC
+* Number of recursive dependencies: 146
-Run `revdepcheck::cloud_details(, "xpose")` for more info
+Run `revdepcheck::cloud_details(, "ufs")` for more info
-## Newly broken
-
-* checking whether package ‘xpose’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/xpose/new/xpose.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘xpose’ ...
-** package ‘xpose’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-Error in get("print.ggplot", envir = asNamespace("ggplot2")) :
- object 'print.ggplot' not found
-Warning: namespace ‘xpose’ is not available and has been replaced
-by .GlobalEnv when processing object ‘xpdb_ex_pk’
+* using log directory ‘/tmp/workdir/ufs/new/ufs.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ufs/DESCRIPTION’ ... OK
...
-Warning: namespace ‘xpose’ is not available and has been replaced
-by .GlobalEnv when processing object ‘xpdb_ex_pk’
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get("print.ggplot", envir = asNamespace("ggplot2")) :
- object 'print.ggplot' not found
-Error: unable to load R code in package ‘xpose’
-Execution halted
-ERROR: lazy loading failed for package ‘xpose’
-* removing ‘/tmp/workdir/xpose/new/xpose.Rcheck/xpose’
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
```
### CRAN
```
-* installing *source* package ‘xpose’ ...
-** package ‘xpose’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (xpose)
+* using log directory ‘/tmp/workdir/ufs/old/ufs.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+ gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+ GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ufs/DESCRIPTION’ ... OK
+...
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
```
diff --git a/revdep/problems.md b/revdep/problems.md
index 075f42dd58..8f51549b4d 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,14 +1,55 @@
-# adklakedata
+# adproclus
-* Version: 0.6.1
-* GitHub: https://github.com/lawinslow/adklakedata
-* Source code: https://github.com/cran/adklakedata
-* Date/Publication: 2018-02-16 19:08:16 UTC
-* Number of recursive dependencies: 61
+* Version: 2.0.0
+* GitHub: https://github.com/henry-heppe/adproclus
+* Source code: https://github.com/cran/adproclus
+* Date/Publication: 2024-08-17 18:00:01 UTC
+* Number of recursive dependencies: 133
+
+Run `revdepcheck::cloud_details(, "adproclus")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Complete output:
+ > # This file is part of the standard setup for testthat.
+ > # It is recommended that you do not modify it.
+ > #
+ > # Where should you do additional test configuration?
+ > # Learn more about the roles of various files in:
+ > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
+ > # * https://testthat.r-lib.org/articles/special-files.html
+ ...
+ ══ Failed tests ════════════════════════════════════════════════════════════════
+ ── Failure ('test-visualize.R:52:9'): Scree plots low dimensional ──────────────
+ Expected `plot_scree_adpc(model_selection, grid = TRUE)` to run without any conditions.
+ i Actually got a with text:
+ `geom_line()`: Each group consists of only one observation.
+ i Do you need to adjust the group aesthetic?
+
+ [ FAIL 1 | WARN 0 | SKIP 0 | PASS 74 ]
+ Error: Test failures
+ Execution halted
+ ```
+
+# allMT
+
+
+
+* Version: 0.1.0
+* GitHub: https://github.com/tmungle/allMT
+* Source code: https://github.com/cran/allMT
+* Date/Publication: 2023-04-20 17:32:33 UTC
+* Number of recursive dependencies: 138
-Run `revdepcheck::cloud_details(, "adklakedata")` for more info
+Run `revdepcheck::cloud_details(, "allMT")` for more info
@@ -16,83 +57,188 @@ Run `revdepcheck::cloud_details(, "adklakedata")` for more info
* checking examples ... ERROR
```
- Running examples in ‘adklakedata-Ex.R’ failed
+ Running examples in ‘allMT-Ex.R’ failed
The error most likely occurred in:
- > ### Name: adk_lake_shapes
- > ### Title: Return path to Lake Polygons Shapefile
- > ### Aliases: adk_lake_shapes
+ > ### Name: plot_progression
+ > ### Title: Graphical representation of maintenance therapy data for single
+ > ### patient
+ > ### Aliases: plot_progression
>
> ### ** Examples
>
- > library(sf)
- Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE
- > bl = read_sf(adklakedata::adk_shape())
- Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
- package tibble not available: install first?
- Calls: read_sf ... st_read -> st_read.character -> process_cpl_read_ogr
+ ...
+ Quitting
+ Bye Bye: Did you know that Jupiter is biggest planet in our solar system :)?
+ Warning in ggplot2::scale_y_continuous(trans = "log10", breaks = c(0, 0.5, :
+ log-10 transformation introduced infinite values.
+ Warning in ggplot2::scale_y_continuous(trans = "log10", breaks = c(0, 0.5, :
+ log-10 transformation introduced infinite values.
+ Error in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
+ invalid mathematical annotation
+ Calls: ... -> widthDetails -> widthDetails.text -> grid.Call
Execution halted
```
## In both
-* checking LazyData ... NOTE
+* checking Rd files ... NOTE
```
- 'LazyData' is specified without a 'data' directory
+ checkRd: (-1) compare_cohorts.Rd:35: Lost braces in \itemize; meant \describe ?
+ checkRd: (-1) compare_cohorts.Rd:36: Lost braces in \itemize; meant \describe ?
```
-# adsoRptionCMF
+# APCI
-* Version: 0.1.0
+* Version: 1.0.8
* GitHub: NA
-* Source code: https://github.com/cran/adsoRptionCMF
-* Date/Publication: 2025-06-05 10:00:05 UTC
-* Number of recursive dependencies: 46
+* Source code: https://github.com/cran/APCI
+* Date/Publication: 2024-09-02 20:20:06 UTC
+* Number of recursive dependencies: 75
-Run `revdepcheck::cloud_details(, "adsoRptionCMF")` for more info
+Run `revdepcheck::cloud_details(, "APCI")` for more info
## Newly broken
-* checking examples ... ERROR
+* checking tests ... ERROR
```
- Running examples in ‘adsoRptionCMF-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: fit_freundlichLM
- > ### Title: Freundlich Isotherm Linear Analysis
- > ### Aliases: fit_freundlichLM
- >
- > ### ** Examples
- >
- > Ce <- c(0.01353, 0.04648, 0.13239, 0.27714, 0.41600, 0.63607, 0.80435, 1.10327, 1.58223)
+ Running ‘1_tests.R’
+ Running the tests in ‘tests/1_tests.R’ failed.
+ Complete output:
+ > # install the package and use this script to test the package
+ > library("APCI")
+ > # or: remotes::install_github("jiahui1902/APCI")
+ > test_data <- APCI::women9017
+ > test_data$acc <- as.factor(test_data$acc)
+ > test_data$pcc <- as.factor(test_data$pcc)
+ > test_data$educc <- as.factor(test_data$educc)
...
- 17. │ └─l$compute_geom_2(d, theme = plot@theme)
- 18. │ └─ggplot2 (local) compute_geom_2(..., self = self)
- 19. │ └─self$geom$use_defaults(...)
- 20. │ └─ggplot2 (local) use_defaults(..., self = self)
- 21. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
- 22. │ └─vctrs::list_sizes(x)
- 23. └─vctrs:::stop_scalar_type(``(``), "x$label", ``)
- 24. └─vctrs:::stop_vctrs(...)
- 25. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
- Execution halted
+ -0.355316789 0.089582104 0.192153615 -0.331514454 0.179289902
+ acc8:pcc3 acc9:pcc3 acc1:pcc4 acc2:pcc4 acc3:pcc4
+ -0.119021995 0.149440647 -0.484785372 -0.013962924 0.292056275
+ acc4:pcc4 acc5:pcc4 acc6:pcc4 acc7:pcc4 acc8:pcc4
+ 0.302556444 0.215656449 -0.171245134 -0.083395132 -0.217705607
+ acc9:pcc4 acc1:pcc5 acc2:pcc5 acc3:pcc5 acc4:pcc5
+ 0.125040240 0.105797087 0.356674102 -0.086783879 -0.100255900
+ acc5:pcc5 acc6:pcc5 acc7:pcc5 acc8:pcc5 acc9:pcc5
+ -0.587743743 -0.362151437 0.333929747 0.603889317 -0.348507261
+ Killed
```
-# adw
+# bmgarch
-* Version: 0.4.0
-* GitHub: https://github.com/PanfengZhang/adw
-* Source code: https://github.com/cran/adw
-* Date/Publication: 2024-04-15 19:10:16 UTC
-* Number of recursive dependencies: 59
+* Version: 2.0.0
+* GitHub: https://github.com/ph-rast/bmgarch
+* Source code: https://github.com/cran/bmgarch
+* Date/Publication: 2023-09-12 00:40:02 UTC
+* Number of recursive dependencies: 78
+
+Run `revdepcheck::cloud_details(, "bmgarch")` for more info
+
+
+
+## Newly broken
+
+* checking whether package ‘bmgarch’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/00install.out’ for details.
+ ```
+
+## Newly fixed
+
+* checking installed package size ... NOTE
+ ```
+ installed size is 303.9Mb
+ sub-directories of 1Mb or more:
+ libs 303.0Mb
+ ```
+
+* checking Rd files ... NOTE
+ ```
+ checkRd: (-1) dot-pred_array_to_df.Rd:20: Lost braces; missing escapes or markup?
+ 20 | Helper function for as.data.frame.{fitted, forecast}. Converts predictive array to data.frame.
+ | ^
+ ```
+
+* checking for GNU extensions in Makefiles ... NOTE
+ ```
+ GNU make is a SystemRequirements.
+ ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘bmgarch’ ...
+** package ‘bmgarch’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
+...
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
+/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
+ 654 | return internal::first_aligned::alignment),Derived>(m);
+ | ^~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_DCCMGARCH.o] Error 1
+ERROR: compilation failed for package ‘bmgarch’
+* removing ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/bmgarch’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘bmgarch’ ...
+** package ‘bmgarch’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+using C++17
+
+
+g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
+...
+** inst
+** byte-compile and prepare package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** testing if installed package can be loaded from temporary location
+** checking absolute paths in shared objects and dynamic libraries
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (bmgarch)
+
+
+```
+# chest
+
+
+
+* Version: 0.3.7
+* GitHub: NA
+* Source code: https://github.com/cran/chest
+* Date/Publication: 2023-03-23 09:50:13 UTC
+* Number of recursive dependencies: 64
-Run `revdepcheck::cloud_details(, "adw")` for more info
+Run `revdepcheck::cloud_details(, "chest")` for more info
@@ -100,87 +246,65 @@ Run `revdepcheck::cloud_details(, "adw")` for more info
* checking examples ... ERROR
```
- Running examples in ‘adw-Ex.R’ failed
+ Running examples in ‘chest-Ex.R’ failed
The error most likely occurred in:
- > ### Name: adw
- > ### Title: Angular Distance Weighting Interpolation.
- > ### Aliases: adw
+ > ### Name: chest_plot
+ > ### Title: Plot effect estimate and change-in-estimate values (ggplot type)
+ > ### Aliases: chest_plot
>
> ### ** Examples
>
- > set.seed(2)
+ > vlist <- c("Age", "Sex", "Married", "Education", "Income")
...
- 4 111.75 31.25 -0.47570806
- 5 112.25 31.25 -1.57521787
- 6 112.75 31.25 -1.10541492
- >
- > # example 2
- > hmap <- cnmap::getMap(code = "410000") |> sf::st_make_valid() # return a 'sf' object.
- Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
- package tibble not available: install first?
- Calls: ... st_read -> st_read.character -> process_cpl_read_ogr
+ 11. │ └─base::withCallingHandlers(...)
+ 12. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
+ 13. └─l$compute_position(d, layout)
+ 14. └─ggplot2 (local) compute_position(..., self = self)
+ 15. └─self$position$use_defaults(data, self$aes_params)
+ 16. └─ggplot2 (local) use_defaults(..., self = self)
+ 17. └─ggplot2:::check_aesthetics(new, nrow(data))
+ 18. └─cli::cli_abort(...)
+ 19. └─rlang::abort(...)
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
- --- re-building ‘Introduction.Rmd’ using rmarkdown
+ ...
+ --- re-building ‘chest-vignette.Rmd’ using rmarkdown
- Quitting from Introduction.Rmd:47-74 [unnamed-chunk-3]
+ Quitting from chest-vignette.Rmd:58-65 [coxhp]
+ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error in `process_cpl_read_ogr()`:
- ! package tibble not available: install first?
- ---
- Backtrace:
- ...
- Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
- package tibble not available: install first?
- --- failed re-building ‘Introduction.Rmd’
+ Error: processing vignette 'chest-vignette.Rmd' failed with diagnostics:
+ ...
+ Caused by error in `check_aesthetics()`:
+ ! Aesthetics must be either length 1 or the same as the data (6).
+ ✖ Fix the following mappings: `nudge_x`.
+ --- failed re-building ‘chest-vignette.Rmd’
SUMMARY: processing the following file failed:
- ‘Introduction.Rmd’
+ ‘chest-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
```
-# afex
-
-
-
-* Version: 1.4-1
-* GitHub: https://github.com/singmann/afex
-* Source code: https://github.com/cran/afex
-* Date/Publication: 2024-09-01 16:10:02 UTC
-* Number of recursive dependencies: 237
-
-Run `revdepcheck::cloud_details(, "afex")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown
- ```
-
-# AgroR
+# decisionSupport
-* Version: 1.3.6
+* Version: 1.115
* GitHub: NA
-* Source code: https://github.com/cran/AgroR
-* Date/Publication: 2024-04-24 02:20:18 UTC
-* Number of recursive dependencies: 117
+* Source code: https://github.com/cran/decisionSupport
+* Date/Publication: 2025-08-19 18:00:02 UTC
+* Number of recursive dependencies: 175
-Run `revdepcheck::cloud_details(, "AgroR")` for more info
+Run `revdepcheck::cloud_details(, "decisionSupport")` for more info
@@ -188,157 +312,174 @@ Run `revdepcheck::cloud_details(, "AgroR")` for more info
* checking examples ... ERROR
```
- Running examples in ‘AgroR-Ex.R’ failed
+ Running examples in ‘decisionSupport-Ex.R’ failed
The error most likely occurred in:
- > ### Name: TBARPLOT.reverse
- > ### Title: Graph: Reverse graph of DICT, DBCT and DQL output when
- > ### geom="bar"
- > ### Aliases: TBARPLOT.reverse
- > ### Keywords: Experimental
+ > ### Name: empirical_EVPI
+ > ### Title: Expected value of perfect information (EVPI) for a simple model
+ > ### with the predictor variable sampled from a normal distribution with.
+ > ### Aliases: empirical_EVPI summary.EVPI_res summary_empirical_EVPI
+ > ### plot.EVPI_res plot_empirical_EVPI
+ > ### Keywords: "Value Information" of
>
- > ### ** Examples
...
- 3 7.822709e-05 0.59104221 0.46541352 0.3244232 4.189412
- 4 1.496061e-02 0.09984009 0.09849058 0.1332682 6.462590
- 5 1.757687e-04 0.67552390 0.42726077 0.3008609 2.566743
- 6 1.138255e-04 0.70461554 0.37578092 0.6357482 2.093636
- > TBARPLOT.reverse(a)
- Warning in geom_text(aes(label = letra, y = media + desvio + sup), position = position_dodge(0.9), :
- Ignoring empty aesthetics: `size` and `family`.
- Error in if (colo == "gray") { : argument is of length zero
- Calls: TBARPLOT.reverse
+ 14. │ └─ggplot2 (local) finish_statistics(..., self = self)
+ 15. │ └─self$stat$finish_layer(data, self$computed_stat_params)
+ 16. │ └─ggplot2 (local) finish_layer(...)
+ 17. │ └─ggplot2::flipped_names(params$flipped_aes)
+ 18. └─base::.handleSimpleError(...)
+ 19. └─rlang (local) h(simpleError(msg, call))
+ 20. └─handlers[[1L]](cnd)
+ 21. └─cli::cli_abort(...)
+ 22. └─rlang::abort(...)
Execution halted
```
-# AgroReg
+# foqat
-* Version: 1.2.10
-* GitHub: NA
-* Source code: https://github.com/cran/AgroReg
-* Date/Publication: 2024-01-16 12:50:16 UTC
-* Number of recursive dependencies: 115
+* Version: 2.0.8.2
+* GitHub: https://github.com/tianshu129/foqat
+* Source code: https://github.com/cran/foqat
+* Date/Publication: 2023-09-30 06:10:02 UTC
+* Number of recursive dependencies: 68
-Run `revdepcheck::cloud_details(, "AgroReg")` for more info
+Run `revdepcheck::cloud_details(, "foqat")` for more info
## Newly broken
-* checking examples ... ERROR
+* checking re-building of vignette outputs ... ERROR
```
- Running examples in ‘AgroReg-Ex.R’ failed
- The error most likely occurred in:
+ Error(s) in re-building vignettes:
+ --- re-building ‘Air_Quality.Rmd’ using rmarkdown
+ --- finished re-building ‘Air_Quality.Rmd’
- > ### Name: adjust_scale
- > ### Title: Utils: Adjust y and x scale
- > ### Aliases: adjust_scale
- >
- > ### ** Examples
- >
- > library(AgroReg)
- ...
- > data("aristolochia")
- > attach(aristolochia)
- > a=LM(trat,resp)
+ --- re-building ‘Atmospheric_Radiation.Rmd’ using rmarkdown
+ --- finished re-building ‘Atmospheric_Radiation.Rmd’
- > b=LL(trat,resp,npar = "LL.3")
- > a=plot_arrange(list(a,b),gray = TRUE)
- Error in equation[[i]] <- plots[[i]][[3]]$plot$s :
- replacement has length zero
- Calls: plot_arrange
- Execution halted
+ --- re-building ‘Basic_Functions.Rmd’ using rmarkdown
+ --- finished re-building ‘Basic_Functions.Rmd’
+
+ --- re-building ‘Particle_Size_Distribution.Rmd’ using rmarkdown
```
-# alookr
+# ggformula
-* Version: 0.3.9
-* GitHub: https://github.com/choonghyunryu/alookr
-* Source code: https://github.com/cran/alookr
-* Date/Publication: 2024-02-11 07:30:02 UTC
-* Number of recursive dependencies: 168
+* Version: 1.0.0
+* GitHub: https://github.com/ProjectMOSAIC/ggformula
+* Source code: https://github.com/cran/ggformula
+* Date/Publication: 2025-10-06 05:10:25 UTC
+* Number of recursive dependencies: 133
-Run `revdepcheck::cloud_details(, "alookr")` for more info
+Run `revdepcheck::cloud_details(, "ggformula")` for more info
## Newly broken
-* checking examples ... ERROR
+* checking for code/documentation mismatches ... WARNING
```
- Running examples in ‘alookr-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: compare_plot
- > ### Title: Comparison plot of train set and test set
- > ### Aliases: compare_plot
- >
- > ### ** Examples
- >
- > library(dplyr)
+ Codoc mismatches from Rd file 'gf_lines.Rd':
+ gf_abline
+ Code: function(object = NULL, gformula = NULL, data = NULL, ...,
+ slope, intercept, color, linetype, linewidth, alpha,
+ xlab, ylab, title, subtitle, caption, stat =
+ "identity", show.legend = NA, show.help = NULL,
+ inherit = FALSE, environment = parent.frame())
+ Docs: function(object = NULL, gformula = NULL, data = NULL, ...,
+ slope, intercept, color, linetype, linewidth, alpha,
+ xlab, ylab, title, subtitle, caption, show.legend =
...
- > sb %>%
- + compare_plot()
- Warning: `unite_()` was deprecated in tidyr 1.2.0.
- ℹ Please use `unite()` instead.
- ℹ The deprecated feature was likely used in the ggmosaic package.
- Please report the issue at .
- Error in make_title(..., self = self) :
- unused arguments ("dataset class", "x")
- Calls: %>% ... labels -> -> resolve_label ->
- Execution halted
+ xintercept, color, linetype, linewidth, alpha, xlab,
+ ylab, title, subtitle, caption, position = "identity",
+ show.legend = NA, show.help = NULL, inherit = FALSE,
+ environment = parent.frame())
+ Argument names in code not in docs:
+ stat
+ Mismatches in argument names (first 3):
+ Position: 15 Code: stat Docs: position
+ Position: 16 Code: position Docs: show.legend
+ Position: 17 Code: show.legend Docs: show.help
+ ```
+
+## In both
+
+* checking installed package size ... NOTE
+ ```
+ installed size is 9.9Mb
+ sub-directories of 1Mb or more:
+ R 1.5Mb
+ doc 2.3Mb
+ help 1.6Mb
```
-# AnalysisLin
+# ggiraph
-* Version: 0.1.2
-* GitHub: NA
-* Source code: https://github.com/cran/AnalysisLin
-* Date/Publication: 2024-01-30 00:10:10 UTC
-* Number of recursive dependencies: 118
+* Version: 0.9.2
+* GitHub: https://github.com/davidgohel/ggiraph
+* Source code: https://github.com/cran/ggiraph
+* Date/Publication: 2025-10-07 15:00:02 UTC
+* Number of recursive dependencies: 87
-Run `revdepcheck::cloud_details(, "AnalysisLin")` for more info
+Run `revdepcheck::cloud_details(, "ggiraph")` for more info
## Newly broken
-* checking examples ... ERROR
+* checking tests ... ERROR
```
- Running examples in ‘AnalysisLin-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: qq_plot
- > ### Title: QQ Plots for Numerical Variables
- > ### Aliases: qq_plot
- >
- > ### ** Examples
- >
- > data(mtcars)
- > qq_plot(mtcars)
- Error in eval(substitute(expr), data, enclos = parent.frame()) :
- object 'x' not found
- Calls: qq_plot ... to_basic.GeomAbline -> with -> with.default -> eval -> eval
- Execution halted
+ Running ‘tinytest.R’
+ Running the tests in ‘tests/tinytest.R’ failed.
+ Complete output:
+ > if (requireNamespace("tinytest", quietly = TRUE)) {
+ + tinytest::test_package("ggiraph")
+ + }
+
+ test-annotate_interactive.R... 0 tests
+ test-annotate_interactive.R... 0 tests
+ test-annotate_interactive.R... 0 tests
+ ...
+ diff| Mean relative difference: 1
+ info| legend labels
+ ----- FAILED[data]: test-guide_legend_interactive.R<64--109>
+ call| expect_equal(tooltips, c("Male", "Female"), info = "legend labels tooltips")
+ diff| Modes: character, list
+ diff| Lengths: 2, 0
+ diff| target is character, current is list
+ info| legend labels tooltips
+ Error: 4 out of 1286 tests failed
+ Execution halted
+ ```
+
+## In both
+
+* checking installed package size ... NOTE
+ ```
+ installed size is 8.2Mb
+ sub-directories of 1Mb or more:
+ R 1.5Mb
+ libs 5.2Mb
```
-# andurinha
+# ggpp
-* Version: 0.0.2
-* GitHub: https://github.com/noemiallefs/andurinha
-* Source code: https://github.com/cran/andurinha
-* Date/Publication: 2020-08-13 08:40:02 UTC
-* Number of recursive dependencies: 74
+* Version: 0.5.9
+* GitHub: https://github.com/aphalo/ggpp
+* Source code: https://github.com/cran/ggpp
+* Date/Publication: 2025-06-28 04:40:02 UTC
+* Number of recursive dependencies: 76
-Run `revdepcheck::cloud_details(, "andurinha")` for more info
+Run `revdepcheck::cloud_details(, "ggpp")` for more info
@@ -350,75 +491,77 @@ Run `revdepcheck::cloud_details(, "andurinha")` for more info
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
- > library(andurinha)
- >
- > test_check("andurinha")
- sample absMax
- 1 A 0.465
- 2 B 0.402
+ > library(ggpp)
+ Loading required package: ggplot2
+ Registered S3 methods overwritten by 'ggpp':
+ method from
+ heightDetails.titleGrob ggplot2
+ widthDetails.titleGrob ggplot2
...
- ── Failure ('test_funtionsOutput.R:29:3'): plotPeaks return a ggplot objetc ────
- class(...) not equal to c("gg", "ggplot").
- Lengths differ: 5 is not 2
- ── Failure ('test_funtionsOutput.R:32:3'): plotPeaks return a ggplot objetc ────
- class(...) not equal to c("gg", "ggplot").
- Lengths differ: 5 is not 2
-
- [ FAIL 4 | WARN 0 | SKIP 0 | PASS 43 ]
+ * stat_fmt_tb/stat-fmt-tb-2.svg
+ * stat_fmt_tb/stat-fmt-tb-3.svg
+ * stat_fmt_tb/stat-fmt-tb-4.svg
+ * stat_panel_counts/stat-group-counts-x.svg
+ * stat_panel_counts/stat-group-counts-xy-color.svg
+ * stat_panel_counts/stat-group-counts-y.svg
+ * stat_panel_counts/stat-panel-counts-x.svg
+ * stat_panel_counts/stat-panel-counts-y.svg
Error: Test failures
Execution halted
```
-# animbook
+# ggside
-* Version: 1.0.0
-* GitHub: https://github.com/KrisanatA/animbook
-* Source code: https://github.com/cran/animbook
-* Date/Publication: 2023-12-05 17:50:07 UTC
-* Number of recursive dependencies: 85
+* Version: 0.4.0
+* GitHub: https://github.com/jtlandis/ggside
+* Source code: https://github.com/cran/ggside
+* Date/Publication: 2025-09-13 05:10:41 UTC
+* Number of recursive dependencies: 69
-Run `revdepcheck::cloud_details(, "animbook")` for more info
+Run `revdepcheck::cloud_details(, "ggside")` for more info
## Newly broken
-* checking examples ... ERROR
+* checking for code/documentation mismatches ... WARNING
```
- Running examples in ‘animbook-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: anim_animate
- > ### Title: Modified the ggplot object
- > ### Aliases: anim_animate
- >
- > ### ** Examples
- >
- > animbook <- anim_prep(data = osiris, id = ID, values = sales, time = year, group = japan)
- >
- > plot <- wallaby_plot(animbook)
- You can now use the animbook::anim_animate() function to
- transform it into an animated object
- >
- > animate <- anim_animate(plot)
- Error in plot$plot_env : object of type 'object' is not subsettable
- Calls: anim_animate
- Execution halted
+ Codoc mismatches from Rd file 'geom_xsideabline.Rd':
+ geom_xsideabline
+ Code: function(mapping = NULL, data = NULL, stat = "identity", ...,
+ slope, intercept, na.rm = FALSE, show.legend = NA,
+ inherit.aes = FALSE)
+ Docs: function(mapping = NULL, data = NULL, ..., slope, intercept,
+ na.rm = FALSE, show.legend = NA)
+ Argument names in code not in docs:
+ stat inherit.aes
+ Mismatches in argument names (first 3):
+ ...
+ position = "identity", ..., xintercept, na.rm = FALSE,
+ show.legend = NA, inherit.aes = FALSE)
+ Docs: function(mapping = NULL, data = NULL, position = "identity",
+ ..., xintercept, na.rm = FALSE, show.legend = NA)
+ Argument names in code not in docs:
+ stat inherit.aes
+ Mismatches in argument names (first 3):
+ Position: 3 Code: stat Docs: position
+ Position: 4 Code: position Docs: ...
+ Position: 5 Code: ... Docs: xintercept
```
-# ANN2
+# ggsurveillance
-* Version: 2.3.4
-* GitHub: https://github.com/bflammers/ANN2
-* Source code: https://github.com/cran/ANN2
-* Date/Publication: 2020-12-01 10:00:02 UTC
-* Number of recursive dependencies: 48
+* Version: 0.5.1
+* GitHub: https://github.com/biostats-dev/ggsurveillance
+* Source code: https://github.com/cran/ggsurveillance
+* Date/Publication: 2025-07-02 10:00:09 UTC
+* Number of recursive dependencies: 101
-Run `revdepcheck::cloud_details(, "ANN2")` for more info
+Run `revdepcheck::cloud_details(, "ggsurveillance")` for more info
@@ -426,15782 +569,47 @@ Run `revdepcheck::cloud_details(, "ANN2")` for more info
* checking tests ... ERROR
```
+ Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
- > library(testthat)
- > library(ANN2)
- >
- > # Only test if not on mac
- > if (tolower(Sys.info()[["sysname"]]) != "darwin") {
- + test_check("ANN2")
- + }
+ > # This file is part of the standard setup for testthat.
+ > # It is recommended that you do not modify it.
+ > #
+ > # Where should you do additional test configuration?
+ > # Learn more about the roles of various files in:
+ > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
...
- ── Failure ('test-plotting.R:59:3'): the reconstruction_plot.ANN() function works correctly ──
- p_AE$labels$colour not equal to "col".
- target is NULL, current is character
- ── Failure ('test-plotting.R:77:3'): the compression_plot.ANN() function works correctly ──
- p_AE$labels$colour not equal to "col".
- target is NULL, current is character
-
- [ FAIL 5 | WARN 2 | SKIP 4 | PASS 143 ]
+ • stat_last_value/3-geom-label-last-value-nudge.svg
+ • stat_last_value/4-geom-text-last-value-repel-min-segment.svg
+ • stat_last_value/5-geom-label-last-value-repel-custom.svg
+ • stat_last_value/6-stat-last-value-abs-nudge-date.svg
+ • stat_last_value/7-stat-last-value-na-at-end.svg
Error: Test failures
+ In addition: Warning message:
+ In Sys.setlocale("LC_ALL", "en_GB.UTF-8") :
+ OS reports request to set locale to "en_GB.UTF-8" cannot be honored
Execution halted
```
## In both
-* checking C++ specification ... NOTE
+* checking data for non-ASCII characters ... NOTE
```
- Specified C++11: please drop specification unless essential
+ Note: found 364 marked UTF-8 strings
```
-* checking installed package size ... NOTE
- ```
- installed size is 48.9Mb
- sub-directories of 1Mb or more:
- cereal 1.4Mb
- libs 47.4Mb
- ```
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# APackOfTheClones
-
-
-
-* Version: 1.2.4
-* GitHub: https://github.com/Qile0317/APackOfTheClones
-* Source code: https://github.com/cran/APackOfTheClones
-* Date/Publication: 2024-11-18 22:30:02 UTC
-* Number of recursive dependencies: 174
-
-Run `revdepcheck::cloud_details(, "APackOfTheClones")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘APackOfTheClones-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: APOTCPlot
- > ### Title: Various variations of visualizations of clonal expansion
- > ### post-RunAPOTC
- > ### Aliases: APOTCPlot
- >
- > ### ** Examples
- >
- ...
- by .GlobalEnv when processing object ‘combined_pbmc’
- Warning: namespace ‘colorspace’ is not available and has been replaced
- by .GlobalEnv when processing object ‘combined_pbmc’
- >
- > combined_pbmc <- RunAPOTC(
- + combined_pbmc, run_id = "run1", verbose = FALSE
- + )
- >
- > # plotting with default arguments will plot the latest "run1"
- > clonal_packing_plot <- APOTCPlot(combined_pbmc)
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/tests.html
- ...
- 27. │ └─vctrs:::stop_names(...)
- 28. │ └─vctrs:::stop_vctrs(...)
- 29. │ └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
- 30. ├─APackOfTheClones:::name_latest_legend_layer(.)
- 31. │ └─plt %>% name_latest_layer(.ApotcLegendLayerName)
- 32. └─APackOfTheClones:::name_latest_layer(., .ApotcLegendLayerName)
-
- [ FAIL 5 | WARN 57 | SKIP 10 | PASS 239 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘APackOfTheClones-install.Rmd’ using rmarkdown
- --- finished re-building ‘APackOfTheClones-install.Rmd’
-
- --- re-building ‘APackOfTheClones-runs.Rmd’ using rmarkdown
- ```
-
-## In both
-
-* checking contents of ‘data’ directory ... WARNING
- ```
- Output for data("combined_pbmc", package = "APackOfTheClones"):
- Warning: namespace ‘colorspace’ is not available and has been replaced
- by .GlobalEnv when processing object ‘combined_pbmc’
- Warning: namespace ‘colorspace’ is not available and has been replaced
- by .GlobalEnv when processing object ‘combined_pbmc’
- Warning: namespace ‘colorspace’ is not available and has been replaced
- by .GlobalEnv when processing object ‘combined_pbmc’
- Warning: namespace ‘colorspace’ is not available and has been replaced
- by .GlobalEnv when processing object ‘combined_pbmc’
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 7.6Mb
- sub-directories of 1Mb or more:
- help 1.1Mb
- libs 5.3Mb
- ```
-
-# applicable
-
-
-
-* Version: 0.1.1
-* GitHub: https://github.com/tidymodels/applicable
-* Source code: https://github.com/cran/applicable
-* Date/Publication: 2024-04-25 00:00:04 UTC
-* Number of recursive dependencies: 114
-
-Run `revdepcheck::cloud_details(, "applicable")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(applicable)
- Loading required package: ggplot2
- >
- > test_check("applicable")
- Loading required package: dplyr
- ...
- `expected` is a character vector ('percentile')
- ── Failure ('test-plot.R:36:3'): output of autoplot.apd_pca is correct when options=distance are provided ──
- ad_plot$labels$y (`actual`) not equal to "percentile" (`expected`).
-
- `actual` is NULL
- `expected` is a character vector ('percentile')
-
- [ FAIL 3 | WARN 0 | SKIP 22 | PASS 90 ]
- Error: Test failures
- Execution halted
- ```
-
-# arena2r
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/pedroliman/arena2r
-* Source code: https://github.com/cran/arena2r
-* Date/Publication: 2018-10-19 15:30:03 UTC
-* Number of recursive dependencies: 86
-
-Run `revdepcheck::cloud_details(, "arena2r")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(arena2r)
- >
- > test_check("arena2r")
- [ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ...
- ── Failure ('tests_arena2r.R:31:3'): plots_sao_gerados ─────────────────────────
- `plot_conf` has type 'object', not 'list'.
- ── Failure ('tests_arena2r.R:32:3'): plots_sao_gerados ─────────────────────────
- `plot_scat` has type 'object', not 'list'.
- ── Failure ('tests_arena2r.R:33:3'): plots_sao_gerados ─────────────────────────
- `plot_box` has type 'object', not 'list'.
-
- [ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘purrr’ ‘shinyBS’ ‘shinydashboard’ ‘shinyjs’
- All declared Imports should be used.
- ```
-
-# ASRgenomics
-
-
-
-* Version: 1.1.4
-* GitHub: NA
-* Source code: https://github.com/cran/ASRgenomics
-* Date/Publication: 2024-01-29 21:20:02 UTC
-* Number of recursive dependencies: 136
-
-Run `revdepcheck::cloud_details(, "ASRgenomics")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/tests.html
- ...
- `expected[2:2]`: "ggplot"
- ── Failure ('test-qc.R:58:3'): filters work ────────────────────────────────────
- class(M_filter$plot.maf) (`actual`) not equal to c("gg", "ggplot") (`expected`).
-
- `actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
- `expected[2:2]`: "ggplot"
-
- [ FAIL 5 | WARN 7 | SKIP 0 | PASS 258 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 8.9Mb
- sub-directories of 1Mb or more:
- data 8.5Mb
- ```
-
-# assignPOP
-
-
-
-* Version: 1.3.0
-* GitHub: https://github.com/alexkychen/assignPOP
-* Source code: https://github.com/cran/assignPOP
-* Date/Publication: 2024-03-13 08:30:02 UTC
-* Number of recursive dependencies: 138
-
-Run `revdepcheck::cloud_details(, "assignPOP")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(assignPOP)
- >
- > test_check("assignPOP")
-
- Correct assignment rates were estimated!!
- A total of 3 assignment tests for 3 pops.
- ...
- ── Failure ('test_accuracy.R:8:3'): Calculate assignment accuracy for Monte-Carlo results ──
- `plot` has type 'object', not 'list'.
- ── Failure ('test_accuracy.R:18:3'): Calculate assignment accuracy for K-fold results ──
- `plot` has type 'object', not 'list'.
- ── Failure ('test_membership.R:5:3'): Plot membership probability ──────────────
- `plot` has type 'object', not 'list'.
-
- [ FAIL 3 | WARN 0 | SKIP 0 | PASS 39 ]
- Error: Test failures
- Execution halted
- ```
-
-# autocogs
-
-
-
-* Version: 0.1.4
-* GitHub: https://github.com/schloerke/autocogs
-* Source code: https://github.com/cran/autocogs
-* Date/Publication: 2021-05-29 17:00:05 UTC
-* Number of recursive dependencies: 70
-
-Run `revdepcheck::cloud_details(, "autocogs")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(autocogs)
- >
- > test_check("autocogs")
- [ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ...
- 8. └─autocogs (local) FUN(X[[i]], ...)
- 9. └─base::lapply(...)
- 10. └─autocogs (local) FUN(X[[i]], ...)
- 11. ├─base::do.call(fn, args)
- 12. └─autocogs (local) ``(...)
- 13. └─base::do.call(loess, c(core_params, params$method.args))
-
- [ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘MASS’ ‘broom’ ‘diptest’ ‘ggplot2’ ‘hexbin’ ‘moments’
- All declared Imports should be used.
- ```
-
-# autoplotly
-
-
-
-* Version: 0.1.4
-* GitHub: https://github.com/terrytangyuan/autoplotly
-* Source code: https://github.com/cran/autoplotly
-* Date/Publication: 2021-04-18 06:50:11 UTC
-* Number of recursive dependencies: 85
-
-Run `revdepcheck::cloud_details(, "autoplotly")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(autoplotly)
- >
- > test_check("autoplotly")
- [ FAIL 2 | WARN 1 | SKIP 0 | PASS 5 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ...
- `expected`: TRUE
- ── Failure ('test_all.R:16:3'): autoplotly is composable with additional ggplot2 elements ──
- inherits(p$ggplot_obj, "ggplot") is not TRUE
-
- `actual`: FALSE
- `expected`: TRUE
-
- [ FAIL 2 | WARN 1 | SKIP 0 | PASS 5 ]
- Error: Test failures
- Execution halted
- ```
-
-# bartMan
-
-
-
-* Version: 0.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/bartMan
-* Date/Publication: 2024-07-24 12:10:02 UTC
-* Number of recursive dependencies: 132
-
-Run `revdepcheck::cloud_details(, "bartMan")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘bartMan’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bartMan’ ...
-** package ‘bartMan’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in eval(exprs[i], envir) : object 'justify_grobs' not found
-Error: unable to load R code in package ‘bartMan’
-Execution halted
-ERROR: lazy loading failed for package ‘bartMan’
-* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bartMan’ ...
-** package ‘bartMan’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (bartMan)
-
-
-```
-# bayesAB
-
-
-
-* Version: 1.1.3
-* GitHub: https://github.com/FrankPortman/bayesAB
-* Source code: https://github.com/cran/bayesAB
-* Date/Publication: 2021-06-25 00:50:02 UTC
-* Number of recursive dependencies: 69
-
-Run `revdepcheck::cloud_details(, "bayesAB")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(bayesAB)
- >
- > test_check("bayesAB")
- [ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-dists.R:34:3'): Success ──────────────────────────────────────
- plotNormalInvGamma(3, 1, 1, 1)$labels$y not equal to "sig_sq".
- target is NULL, current is character
-
- [ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) plotDistributions.Rd:32: Lost braces
- 32 | plot{...} functions are generated programmatically so the function calls in
- | ^
- ```
-
-# bayesassurance
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/jpan928/bayesassurance_rpackage
-* Source code: https://github.com/cran/bayesassurance
-* Date/Publication: 2022-06-17 10:40:17 UTC
-* Number of recursive dependencies: 84
-
-Run `revdepcheck::cloud_details(, "bayesassurance")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(bayesassurance)
- >
- > test_check("bayesassurance")
- [1] 20 10
- [1] 30 10
- [1] 40 10
- ...
- Error in `out$plot$labels`: object of type 'object' is not subsettable
- Backtrace:
- ▆
- 1. └─testthat::expect_identical(out$plot$labels$y, "Power/Assurance") at test-pwr_curves.R:114:3
- 2. └─testthat::quasi_label(enquo(object), label, arg = "object")
- 3. └─rlang::eval_bare(expr, quo_get_env(quo))
-
- [ FAIL 15 | WARN 92 | SKIP 0 | PASS 125 ]
- Error: Test failures
- Execution halted
- ```
-
-# BayesCVI
-
-
-
-* Version: 1.0.1
-* GitHub: NA
-* Source code: https://github.com/cran/BayesCVI
-* Date/Publication: 2024-09-04 15:50:02 UTC
-* Number of recursive dependencies: 30
-
-Run `revdepcheck::cloud_details(, "BayesCVI")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘BayesCVI’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘BayesCVI’
- See ‘/tmp/workdir/BayesCVI/new/BayesCVI.Rcheck/00install.out’ for details.
- ```
-
-# BayesianReasoning
-
-
-
-* Version: 0.4.2
-* GitHub: https://github.com/gorkang/BayesianReasoning
-* Source code: https://github.com/cran/BayesianReasoning
-* Date/Publication: 2023-11-14 11:33:20 UTC
-* Number of recursive dependencies: 104
-
-Run `revdepcheck::cloud_details(, "BayesianReasoning")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(BayesianReasoning)
- >
- > test_check("BayesianReasoning")
-
- Plot created in: ./FP_10_sens_100_screening_1667_diagnostic_44.png
-
- ...
- `names(expected)` is absent
- ── Failure ('test-PPV_heatmap.R:1097:3'): Plot with line overlay ───────────────
- vapply(p$result$layers, function(x) class(x$geom)[1], "") (`actual`) not identical to c("GeomTile", "GeomSegment", "GeomPoint", "GeomMarkRect") (`expected`).
-
- `names(actual)` is a character vector ('geom_tile', 'annotate', 'annotate...3', 'geom_mark_rect')
- `names(expected)` is absent
-
- [ FAIL 8 | WARN 16 | SKIP 4 | PASS 115 ]
- Error: Test failures
- Execution halted
- ```
-
-# BayesMultiMode
-
-
-
-* Version: 0.7.3
-* GitHub: https://github.com/paullabonne/BayesMultiMode
-* Source code: https://github.com/cran/BayesMultiMode
-* Date/Publication: 2024-10-31 15:30:06 UTC
-* Number of recursive dependencies: 104
-
-Run `revdepcheck::cloud_details(, "BayesMultiMode")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘BayesMultiMode’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
- See ‘/tmp/workdir/BayesMultiMode/new/BayesMultiMode.Rcheck/00install.out’ for details.
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 6.5Mb
- sub-directories of 1Mb or more:
- help 6.1Mb
- ```
-
-# BCEA
-
-
-
-* Version: 2.4.7
-* GitHub: https://github.com/n8thangreen/BCEA
-* Source code: https://github.com/cran/BCEA
-* Date/Publication: 2025-01-14 12:30:08 UTC
-* Number of recursive dependencies: 123
-
-Run `revdepcheck::cloud_details(, "BCEA")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘BCEA-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: plot.bcea
- > ### Title: Summary Plot of the Health Economic Analysis
- > ### Aliases: plot.bcea
- > ### Keywords: hplot
- >
- > ### ** Examples
- >
- ...
- 21. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
- 22. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
- 23. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
- 24. │ └─base::withCallingHandlers(...)
- 25. └─ggplot2::merge_element(t2[[item]], t1[[item]])
- 26. ├─S7::S7_dispatch()
- 27. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...)
- 28. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.")
- 29. └─rlang::abort(...)
- Execution halted
- ```
-
-# bdsm
-
-
-
-* Version: 0.2.1
-* GitHub: NA
-* Source code: https://github.com/cran/bdsm
-* Date/Publication: 2025-05-02 18:50:02 UTC
-* Number of recursive dependencies: 110
-
-Run `revdepcheck::cloud_details(, "bdsm")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
- > # * https://testthat.r-lib.org/articles/special-files.html
- ...
- [2] "ggplot" -
- [3] "ggplot2::gg" -
- [4] "S7_object" -
- [5] "gg" | "gg" [1]
- - "ggplot" [2]
- [6] "ggarrange" | "ggarrange" [3]
-
- [ FAIL 10 | WARN 0 | SKIP 6 | PASS 69 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘bdsm_vignette.Rnw’ using Sweave
- Error: processing vignette 'bdsm_vignette.Rnw' failed with diagnostics:
- Running 'texi2dvi' on 'bdsm_vignette.tex' failed.
- LaTeX errors:
- ! LaTeX Error: File `vmargin.sty' not found.
-
- Type X to quit or to proceed,
- or enter new name. (Default extension: sty)
- ...
- l.5 \usepackage
- {amsmath}^^M
- ! ==> Fatal error occurred, no output PDF file produced!
- --- failed re-building ‘bdsm_vignette.Rnw’
-
- SUMMARY: processing the following file failed:
- ‘bdsm_vignette.Rnw’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# BeeBDC
-
-
-
-* Version: 1.2.1
-* GitHub: https://github.com/jbdorey/BeeBDC
-* Source code: https://github.com/cran/BeeBDC
-* Date/Publication: 2024-11-04 04:10:02 UTC
-* Number of recursive dependencies: 217
-
-Run `revdepcheck::cloud_details(, "BeeBDC")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/tests.html
- > # * https://testthat.r-lib.org/reference/test_package.html#special-files
- ...
- attributes(testOut)$class (`actual`) not equal to c("gg", "ggplot") (`expected`).
-
- `actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
- `expected[2:2]`: "ggplot"
- ── Failure ('test-summaryMaps.R:23:3'): summaryMaps expected class ─────────────
- `testMap` has type 'object', not 'list'.
-
- [ FAIL 8 | WARN 5 | SKIP 0 | PASS 242 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 219 marked UTF-8 strings
- ```
-
-# benchr
-
-
-
-* Version: 0.2.5
-* GitHub: NA
-* Source code: https://github.com/cran/benchr
-* Date/Publication: 2020-03-07 06:30:03 UTC
-* Number of recursive dependencies: 28
-
-Run `revdepcheck::cloud_details(, "benchr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘tinytest.R’
- Running the tests in ‘tests/tinytest.R’ failed.
- Complete output:
- > if (requireNamespace("tinytest", quietly = TRUE)) {
- + tinytest::test_package("benchr")
- + }
-
- test-benchmark.R.............. 0 tests 0% 10 20 30 40 50 60 70 80 90 100%
- [----|----|----|----|----|----|----|----|----|----|
- **************************************************|
- ...
- call| expect_equal(class(pp2), c("gg", "ggplot"))
- diff| Lengths (2, 5) differ (string compare on first 2)
- diff| 1 string mismatch
- ----- FAILED[attr]: test-plot.R<62--62>
- call| expect_equal(pp2$labels, list(x = "replications", y = "time",
- call| --> colour = NULL))
- diff| Attributes: < names for current but not for target >
- diff| Attributes: < Length mismatch: comparison on first 0 components >
- Error: 10 out of 176 tests failed
- Execution halted
- ```
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# biclustermd
-
-
-
-* Version: 0.2.3
-* GitHub: https://github.com/jreisner/biclustermd
-* Source code: https://github.com/cran/biclustermd
-* Date/Publication: 2021-06-17 15:10:06 UTC
-* Number of recursive dependencies: 81
-
-Run `revdepcheck::cloud_details(, "biclustermd")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(biclustermd)
- Loading required package: ggplot2
- Loading required package: tidyr
-
- Attaching package: 'tidyr'
-
- ...
- ── Failure ('test-autoplot_biclustermd.R:6:3'): autoplot_biclustermd() correctly plots cluster lines ──
- ap$data[[3]]$xintercept[-1] not equal to cumsum(colSums(sbc$P)) + 0.5.
- Classes differ: 'mapped_discrete'/'numeric' is not 'numeric'
- ── Failure ('test-autoplot_biclustermd.R:7:3'): autoplot_biclustermd() correctly plots cluster lines ──
- ap$data[[4]]$yintercept[-1] not equal to cumsum(colSums(sbc$Q)) + 0.5.
- Classes differ: 'mapped_discrete'/'numeric' is not 'numeric'
-
- [ FAIL 2 | WARN 0 | SKIP 0 | PASS 66 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘nycflights13’
- All declared Imports should be used.
- ```
-
-# biometryassist
-
-
-
-* Version: 1.3.0
-* GitHub: https://github.com/biometryhub/biometryassist
-* Source code: https://github.com/cran/biometryassist
-* Date/Publication: 2025-06-11 11:00:12 UTC
-* Number of recursive dependencies: 85
-
-Run `revdepcheck::cloud_details(, "biometryassist")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(biometryassist)
- >
- > test_check("biometryassist")
- Starting 2 test processes
- [ FAIL 7 | WARN 0 | SKIP 157 | PASS 311 ]
-
- ...
- • resplot/resplot-for-asreml-pt-2.svg
- • resplot/resplot-for-asreml-pt-3.svg
- • resplot/resplot-for-asreml-single.svg
- • resplot/resplot-for-lme4.svg
- • resplot/resplot-for-sommer-mmer.svg
- • resplot/resplot-for-sommer-mmes.svg
- • resplot/resplot-onepage-true.svg
- • resplot/resplot-with-smaller-call.svg
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Packages which this enhances but not available for checking:
- 'asreml', 'ARTool', 'lme4', 'sommer'
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘lme4’
- ```
-
-# BiVariAn
-
-
-
-* Version: 1.0.1
-* GitHub: https://github.com/AndresFloresG/BiVariAn
-* Source code: https://github.com/cran/BiVariAn
-* Date/Publication: 2025-03-05 13:10:02 UTC
-* Number of recursive dependencies: 198
-
-Run `revdepcheck::cloud_details(, "BiVariAn")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘BiVariAn-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: auto_bar_categ
- > ### Title: Automatic generation of barplot with percentages
- > ### Aliases: auto_bar_categ
- >
- > ### ** Examples
- >
- > data<-data.frame(categ = rep(letters[1:2], 10),
- ...
- 1. └─BiVariAn::auto_bar_categ(data = data, groupvar = "categ", lang_labs = "EN")
- 2. └─BiVariAn (local) theme_func()
- 3. ├─... %+replace% ...
- 4. │ └─ggplot2::is_theme(e1)
- 5. │ └─S7::S7_inherits(x, class_theme)
- 6. └─ggprism::theme_prism(...)
- 7. └─parent %+replace% t
- 8. └─cli::cli_abort("{.code %+replace%} requires two theme objects")
- 9. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
- ...
- 4. │ └─ggplot2::is_theme(e1)
- 5. │ └─S7::S7_inherits(x, class_theme)
- 6. └─ggprism::theme_prism(...)
- 7. └─parent %+replace% t
- 8. └─cli::cli_abort("{.code %+replace%} requires two theme objects")
- 9. └─rlang::abort(...)
-
- [ FAIL 8 | WARN 2 | SKIP 7 | PASS 100 ]
- Error: Test failures
- Execution halted
- ```
-
-# brolgar
-
-
-
-* Version: 1.0.1
-* GitHub: https://github.com/njtierney/brolgar
-* Source code: https://github.com/cran/brolgar
-* Date/Publication: 2024-05-10 14:50:34 UTC
-* Number of recursive dependencies: 100
-
-Run `revdepcheck::cloud_details(, "brolgar")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘brolgar-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: facet_sample
- > ### Title: Facet data into groups to facilitate exploration
- > ### Aliases: facet_sample
- >
- > ### ** Examples
- >
- > library(ggplot2)
- > ggplot(heights,
- + aes(x = year,
- + y = height_cm,
- + group = country)) +
- + geom_line() +
- + facet_sample()
- Error in if (params$as.table) { : argument is of length zero
- Calls: ... -> setup -> -> compute_layout
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘exploratory-modelling.Rmd’ using rmarkdown
- ```
-
-# bullseye
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/cbhurley/bullseye
-* Source code: https://github.com/cran/bullseye
-* Date/Publication: 2025-05-09 10:10:02 UTC
-* Number of recursive dependencies: 158
-
-Run `revdepcheck::cloud_details(, "bullseye")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘bullseye-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: add_nobs_to_pairwise
- > ### Title: Adds number of observations column to pairwise tibble
- > ### Aliases: add_nobs_to_pairwise
- >
- > ### ** Examples
- >
- > irisc <- pairwise_scores(iris[40:150,], by= "Species")
- ...
- 20. │ └─base::lapply(...)
- 21. │ └─ggplot2 (local) FUN(X[[i]], ...)
- 22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
- 23. │ └─self$draw_panel(...)
- 24. └─base::.handleSimpleError(...)
- 25. └─rlang (local) h(simpleError(msg, call))
- 26. └─handlers[[1L]](cnd)
- 27. └─cli::cli_abort(...)
- 28. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘calc_pairwise.Rmd’ using rmarkdown
- --- finished re-building ‘calc_pairwise.Rmd’
-
- --- re-building ‘integrating.Rmd’ using rmarkdown
- ```
-
-# calmr
-
-
-
-* Version: 0.7.0
-* GitHub: https://github.com/victor-navarro/calmr
-* Source code: https://github.com/cran/calmr
-* Date/Publication: 2025-05-11 21:30:02 UTC
-* Number of recursive dependencies: 105
-
-Run `revdepcheck::cloud_details(, "calmr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(calmr)
-
- Attaching package: 'calmr'
-
- The following object is masked from 'package:stats':
- ...
- ── Failure ('test-RSA.R:64:3'): plotting RSA with a test works ─────────────────
- `plt` does not have names.
- ── Failure ('test-graphs.R:15:3'): calmr_model_graph works ─────────────────────
- `g` does not have names.
- ── Failure ('test-graphs.R:25:3'): calmr_model_graph takes a trial ─────────────
- `g` does not have names.
-
- [ FAIL 4 | WARN 0 | SKIP 0 | PASS 246 ]
- Error: Test failures
- Execution halted
- ```
-
-# canvasXpress
-
-
-
-* Version: 1.56.1
-* GitHub: https://github.com/neuhausi/canvasXpress
-* Source code: https://github.com/cran/canvasXpress
-* Date/Publication: 2025-04-08 19:30:02 UTC
-* Number of recursive dependencies: 146
-
-Run `revdepcheck::cloud_details(, "canvasXpress")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(canvasXpress)
- > require(canvasXpress.data)
- Loading required package: canvasXpress.data
- >
- > test_check("canvasXpress")
- Loading required package: htmlwidgets
- ...
- 2. │ └─base::withCallingHandlers(...)
- 3. └─canvasXpress::ggplot.as.list(gplot)
- 4. └─canvasXpress:::gg_cxplot(o, "canvas", ...)
- 5. └─canvasXpress:::gg_theme(o)
- 6. ├─base::as.character(e[[a]])
- 7. └─base::as.character.default(e[[a]])
-
- [ FAIL 9 | WARN 1 | SKIP 479 | PASS 58 ]
- Error: Test failures
- Execution halted
- ```
-
-# carbonr
-
-
-
-* Version: 0.2.1
-* GitHub: NA
-* Source code: https://github.com/cran/carbonr
-* Date/Publication: 2024-10-16 18:10:09 UTC
-* Number of recursive dependencies: 99
-
-Run `revdepcheck::cloud_details(, "carbonr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(carbonr)
- >
- > test_check("carbonr")
- [ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ...
- ── Failure ('test-output_display.R:15:3'): output_display generates gg/ggplot object ──
- class(output1) not equal to c("gg", "ggplot").
- Lengths differ: 5 is not 2
- ── Failure ('test-output_display.R:16:3'): output_display generates gg/ggplot object ──
- class(output2) not equal to c("gg", "ggplot").
- Lengths differ: 5 is not 2
-
- [ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘sp’ ‘tibble’
- All declared Imports should be used.
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 710 marked UTF-8 strings
- ```
-
-# caretEnsemble
-
-
-
-* Version: 4.0.1
-* GitHub: https://github.com/zachmayer/caretEnsemble
-* Source code: https://github.com/cran/caretEnsemble
-* Date/Publication: 2024-09-12 21:50:09 UTC
-* Number of recursive dependencies: 174
-
-Run `revdepcheck::cloud_details(, "caretEnsemble")` for more info
-
-
-
-## Newly broken
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.2Mb
- sub-directories of 1Mb or more:
- data 4.5Mb
- ```
-
-# cartographr
-
-
-
-* Version: 0.2.2
-* GitHub: https://github.com/da-wi/cartographr
-* Source code: https://github.com/cran/cartographr
-* Date/Publication: 2024-06-28 14:50:09 UTC
-* Number of recursive dependencies: 95
-
-Run `revdepcheck::cloud_details(, "cartographr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
- > # * https://testthat.r-lib.org/articles/special-files.html
- ...
- > test_check("cartographr")
- [ FAIL 1 | WARN 1 | SKIP 0 | PASS 106 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-utils.R:13:3'): add_attribution returns correct ggplot2 labs object ──
- `result` inherits from 'ggplot2::labels'/'gg'/'S7_object' not 'labels'.
-
- [ FAIL 1 | WARN 1 | SKIP 0 | PASS 106 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.3Mb
- sub-directories of 1Mb or more:
- data 3.5Mb
- ```
-
-# causact
-
-
-
-* Version: 0.5.7
-* GitHub: https://github.com/flyaflya/causact
-* Source code: https://github.com/cran/causact
-* Date/Publication: 2025-01-15 21:20:01 UTC
-* Number of recursive dependencies: 98
-
-Run `revdepcheck::cloud_details(, "causact")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(causact)
- WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment.
-
- Attaching package: 'causact'
-
- The following objects are masked from 'package:stats':
- ...
- WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment.
- [ FAIL 1 | WARN 1 | SKIP 0 | PASS 60 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-dag_plot.R:4:3'): dag plot creates graph ─────────────────────
- `plotGr` has type 'object', not 'list'.
-
- [ FAIL 1 | WARN 1 | SKIP 0 | PASS 60 ]
- Error: Test failures
- Execution halted
- ```
-
-# CausalImpact
-
-
-
-* Version: 1.3.0
-* GitHub: NA
-* Source code: https://github.com/cran/CausalImpact
-* Date/Publication: 2022-11-09 08:40:40 UTC
-* Number of recursive dependencies: 73
-
-Run `revdepcheck::cloud_details(, "CausalImpact")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘CausalImpact_import_test.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # Copyright 2014-2022 Google Inc. All rights reserved.
- > #
- > # Licensed under the Apache License, Version 2.0 (the "License");
- > # you may not use this file except in compliance with the License.
- > # You may obtain a copy of the License at
- > #
- ...
- Lengths differ: 5 is not 2
- ── Failure ('test-impact-plot.R:147:3'): CreateImpactPlot ──────────────────────
- !isTRUE(all.equal(q1, q2, check.environment = FALSE)) is not TRUE
-
- `actual`: FALSE
- `expected`: TRUE
-
- [ FAIL 3 | WARN 4 | SKIP 0 | PASS 738 ]
- Error: Test failures
- Execution halted
- ```
-
-# centerline
-
-
-
-* Version: 0.2.2
-* GitHub: https://github.com/atsyplenkov/centerline
-* Source code: https://github.com/cran/centerline
-* Date/Publication: 2025-03-16 04:40:02 UTC
-* Number of recursive dependencies: 108
-
-Run `revdepcheck::cloud_details(, "centerline")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘centerline-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: geom_cnt_text
- > ### Title: Plot label or text on centerline with ggplot2
- > ### Aliases: geom_cnt_text geom_cnt_label
- >
- > ### ** Examples
- >
- > ## Don't show:
- ...
- 24. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
- 25. │ └─self$draw_panel(...)
- 26. │ └─geomtextpath (local) draw_panel(...)
- 27. │ └─geomtextpath:::sf_textgrob(...)
- 28. └─base::.handleSimpleError(...)
- 29. └─rlang (local) h(simpleError(msg, call))
- 30. └─handlers[[1L]](cnd)
- 31. └─cli::cli_abort(...)
- 32. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
- > # * https://testthat.r-lib.org/articles/special-files.html
- ...
- 6. └─base::lapply(...)
- 7. └─ggplot2 (local) FUN(X[[i]], ...)
- 8. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
- 9. └─self$draw_panel(...)
- 10. └─geomtextpath (local) draw_panel(...)
- 11. └─geomtextpath:::sf_textgrob(...)
-
- [ FAIL 3 | WARN 0 | SKIP 0 | PASS 245 ]
- Error: Test failures
- Execution halted
- ```
-
-# Certara.Xpose.NLME
-
-
-
-* Version: 2.0.2
-* GitHub: NA
-* Source code: https://github.com/cran/Certara.Xpose.NLME
-* Date/Publication: 2025-01-28 15:50:10 UTC
-* Number of recursive dependencies: 98
-
-Run `revdepcheck::cloud_details(, "Certara.Xpose.NLME")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘Certara.Xpose.NLME-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: eta_vs_cov
- > ### Title: ETAs vs covariate Plot
- > ### Aliases: eta_vs_cov
- >
- > ### ** Examples
- >
- > eta_vs_cov(xpose::xpdb_ex_pk,
- ...
- 4. ├─purrr::map_if(...)
- 5. │ └─purrr:::where_if(.x, .p)
- 6. │ └─rlang::is_logical(.p)
- 7. ├─stringr::str_detect(., "@")
- 8. │ └─stringr:::check_lengths(string, pattern)
- 9. │ └─vctrs::vec_size_common(...)
- 10. └─vctrs:::stop_scalar_type(``(``), "string", ``)
- 11. └─vctrs:::stop_vctrs(...)
- 12. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
- Execution halted
- ```
-
-# cheem
-
-
-
-* Version: 0.4.0.0
-* GitHub: https://github.com/nspyrison/cheem
-* Source code: https://github.com/cran/cheem
-* Date/Publication: 2023-11-08 21:30:02 UTC
-* Number of recursive dependencies: 148
-
-Run `revdepcheck::cloud_details(, "cheem")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(cheem)
- --------------------------------------------------------
- cheem --- version 0.4.0.0
- Please share bugs, suggestions, and feature requests at:
- https://github.com/nspyrison/cheem/issues/
- --------------------------------------------------------
- ...
- `expected[2:2]`: "ggplot"
- ── Failure ('test-2_visualization.r:66:3'): radial_cheem_tour ──────────────────
- class(r_ggt) (`actual`) not equal to c("gg", "ggplot") (`expected`).
-
- `actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
- `expected[2:2]`: "ggplot"
-
- [ FAIL 6 | WARN 0 | SKIP 0 | PASS 10 ]
- Error: Test failures
- Execution halted
- ```
-
-# circumplex
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/jmgirard/circumplex
-* Source code: https://github.com/cran/circumplex
-* Date/Publication: 2024-10-28 04:30:02 UTC
-* Number of recursive dependencies: 93
-
-Run `revdepcheck::cloud_details(, "circumplex")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(circumplex)
- >
- > test_check("circumplex")
- [ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ]
-
- ══ Skipped tests (20) ══════════════════════════════════════════════════════════
- ...
- [ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ]
- Deleting unused snapshots:
- • ssm_plot/many-circle-repel.svg
- • ssm_plot/many-curve-plots.svg
- • ssm_plot/measure-contrast-circle-ssm.svg
- • ssm_plot/measure-contrast-curve-ssm.svg
- • ssm_plot/single-group-mean-ssm-no-palette.svg
- • ssm_plot/single-group-mean-ssm-with-labels.svg
- Error: Test failures
- Execution halted
- ```
-
-# clifro
-
-
-
-* Version: 3.2-5
-* GitHub: https://github.com/ropensci/clifro
-* Source code: https://github.com/cran/clifro
-* Date/Publication: 2021-05-24 05:50:02 UTC
-* Number of recursive dependencies: 80
-
-Run `revdepcheck::cloud_details(, "clifro")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘test-all.R’
- Running the tests in ‘tests/test-all.R’ failed.
- Complete output:
- > library(testthat)
- > library(clifro)
- >
- > test_check("clifro")
- [ FAIL 1 | WARN 1 | SKIP 4 | PASS 10 ]
-
- ...
- • On CRAN (4): 'test-cf_find_station.R:4:3', 'test-cf_last_query.R:4:3',
- 'test-cf_query.R:4:3', 'test-cf_station.R:4:3'
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-windrose.R:15:3'): windrose ──────────────────────────────────
- tt$labels inherits from `'ggplot2::labels'/'gg'/'S7_object'` not `'character'`.
-
- [ FAIL 1 | WARN 1 | SKIP 4 | PASS 10 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) cf_save_kml.Rd:68: Lost braces
- 68 | \code{\link{cf_find_station}} and code{vignette("choose-station")} for
- | ^
- ```
-
-# climwin
-
-
-
-* Version: 1.2.31
-* GitHub: https://github.com/LiamDBailey/climwin
-* Source code: https://github.com/cran/climwin
-* Date/Publication: 2025-06-08 16:40:02 UTC
-* Number of recursive dependencies: 80
-
-Run `revdepcheck::cloud_details(, "climwin")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(climwin)
- >
- > test_check("climwin")
-
- |
- | | 0%
- ...
- `expected`: TRUE
- ── Failure ('testplotwin.R:15:3'): plotwin produces a graph ────────────────────
- attr(test, "class")[1] == "gg" is not TRUE
-
- `actual`: FALSE
- `expected`: TRUE
-
- [ FAIL 7 | WARN 761 | SKIP 3 | PASS 790 ]
- Error: Test failures
- Execution halted
- ```
-
-# clockSim
-
-
-
-* Version: 0.1.2
-* GitHub: https://github.com/yeyuan98/clockSim
-* Source code: https://github.com/cran/clockSim
-* Date/Publication: 2025-04-22 20:10:01 UTC
-* Number of recursive dependencies: 78
-
-Run `revdepcheck::cloud_details(, "clockSim")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘clockSim’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
- See ‘/tmp/workdir/clockSim/new/clockSim.Rcheck/00install.out’ for details.
- ```
-
-# cmcR
-
-
-
-* Version: 0.1.11
-* GitHub: NA
-* Source code: https://github.com/cran/cmcR
-* Date/Publication: 2022-12-10 14:00:02 UTC
-* Number of recursive dependencies: 120
-
-Run `revdepcheck::cloud_details(, "cmcR")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(cmcR)
- >
- > test_check("cmcR",reporter = SummaryReporter)
- adding: bindata/ (stored 0%)
- adding: bindata/data.bin (deflated 58%)
- adding: main.xml (deflated 62%)
- ...
-
- ── 2. Failure ('test-diagnosticTools.R:104:3'): diagnosticTools functions work a
- all(unlist(purrr::map(cmcPlt_list, ~class(.) == c("gg", "ggplot")))) is not TRUE
-
- `actual`: FALSE
- `expected`: TRUE
-
- ══ DONE ════════════════════════════════════════════════════════════════════════
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.5Mb
- sub-directories of 1Mb or more:
- data 2.5Mb
- doc 2.3Mb
- ```
-
-# cnmap
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/PanfengZhang/cnmap
-* Source code: https://github.com/cran/cnmap
-* Date/Publication: 2024-04-02 12:42:06 UTC
-* Number of recursive dependencies: 58
-
-Run `revdepcheck::cloud_details(, "cnmap")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘cnmap-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: getMap
- > ### Title: China Map Data from AutoNavi Map
- > ### Aliases: getMap
- >
- > ### ** Examples
- >
- > library(cnmap)
- >
- > map1 <- getMap(code = "110000") # get the map data of Beijing City
- Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
- package tibble not available: install first?
- Calls: getMap ... st_read -> st_read.character -> process_cpl_read_ogr
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘Introduction.Rmd’ using rmarkdown
-
- Quitting from Introduction.Rmd:28-35 [unnamed-chunk-3]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error in `process_cpl_read_ogr()`:
- ! package tibble not available: install first?
- ---
- Backtrace:
- ...
-
- Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
- package tibble not available: install first?
- --- failed re-building ‘Introduction.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘Introduction.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# cocktailApp
-
-
-
-* Version: 0.2.3
-* GitHub: https://github.com/shabbychef/cocktailApp
-* Source code: https://github.com/cran/cocktailApp
-* Date/Publication: 2023-07-19 13:40:09 UTC
-* Number of recursive dependencies: 93
-
-Run `revdepcheck::cloud_details(, "cocktailApp")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘cocktailApp’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/00install.out’ for details.
- ```
-
-## Newly fixed
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 14729 marked UTF-8 strings
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘cocktailApp’ ...
-** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'ggtern', details:
- call: NULL
- error: object properties are invalid:
-- @lineend must be or , not S3
-Execution halted
-ERROR: lazy loading failed for package ‘cocktailApp’
-* removing ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/cocktailApp’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘cocktailApp’ ...
-** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (cocktailApp)
-
-
-```
-# coda.plot
-
-
-
-* Version: 0.1.9
-* GitHub: NA
-* Source code: https://github.com/cran/coda.plot
-* Date/Publication: 2025-04-20 21:30:02 UTC
-* Number of recursive dependencies: 41
-
-Run `revdepcheck::cloud_details(, "coda.plot")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘coda.plot’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘coda.plot’ ...
-** package ‘coda.plot’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'ggtern', details:
- call: NULL
- error: object properties are invalid:
-- @lineend must be or , not S3
-Execution halted
-ERROR: lazy loading failed for package ‘coda.plot’
-* removing ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/coda.plot’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘coda.plot’ ...
-** package ‘coda.plot’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (coda.plot)
-
-
-```
-# conquestr
-
-
-
-* Version: 1.5.1
-* GitHub: NA
-* Source code: https://github.com/cran/conquestr
-* Date/Publication: 2025-05-18 07:50:02 UTC
-* Number of recursive dependencies: 77
-
-Run `revdepcheck::cloud_details(, "conquestr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(conquestr)
- >
- > test_check("conquestr")
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-ConQuestRout.R:10:3'): Rout file is of correct type ──────────
- `myRoutPlot` has type 'object', not 'list'.
-
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ]
- Error: Test failures
- Execution halted
- ```
-
-# constructive
-
-
-
-* Version: 1.1.0
-* GitHub: https://github.com/cynkra/constructive
-* Source code: https://github.com/cran/constructive
-* Date/Publication: 2025-01-10 14:10:01 UTC
-* Number of recursive dependencies: 111
-
-Run `revdepcheck::cloud_details(, "constructive")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(constructive)
- >
- > test_check("constructive")
- [ FAIL 6 | WARN 2 | SKIP 113 | PASS 24 ]
-
- ══ Skipped tests (113) ═════════════════════════════════════════════════════════
- ...
- 13. │ └─constructive:::strip_theme(x)
- 14. │ └─constructive:::`$<-`(`*tmp*`, size, value = NULL)
- 15. │ └─constructive:::`[[<-`(...)
- 16. └─rlang (local) ``(``)
- 17. └─handlers[[1L]](cnd)
- 18. └─rlang::abort(...)
-
- [ FAIL 6 | WARN 2 | SKIP 113 | PASS 24 ]
- Error: Test failures
- Execution halted
- ```
-
-# CoSMoS
-
-
-
-* Version: 2.1.0
-* GitHub: https://github.com/TycheLab/CoSMoS
-* Source code: https://github.com/cran/CoSMoS
-* Date/Publication: 2021-05-29 23:20:08 UTC
-* Number of recursive dependencies: 77
-
-Run `revdepcheck::cloud_details(, "CoSMoS")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘vignette.Rmd’ using rmarkdown
- ```
-
-# countfitteR
-
-
-
-* Version: 1.4
-* GitHub: https://github.com/BioGenies/countfitteR
-* Source code: https://github.com/cran/countfitteR
-* Date/Publication: 2020-09-30 21:30:02 UTC
-* Number of recursive dependencies: 87
-
-Run `revdepcheck::cloud_details(, "countfitteR")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(countfitteR)
- >
- > test_check("countfitteR")
- [ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ]
-
- ...
- 1. ├─testthat::expect_equal(p$labels[[1]], "x") at testing.R:45:3
- 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
- 3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
- 4. ├─p$labels[[1]]
- 5. ├─S7:::`[[.S7_object`(p$labels, 1)
- 6. └─base::NextMethod()
-
- [ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) summary_fitlist.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) summary_fitlist.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) summary_fitlist.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) summary_fitlist.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) summary_fitlist.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
- ```
-
-# covidcast
-
-
-
-* Version: 0.5.2
-* GitHub: https://github.com/cmu-delphi/covidcast
-* Source code: https://github.com/cran/covidcast
-* Date/Publication: 2023-07-12 23:40:06 UTC
-* Number of recursive dependencies: 89
-
-Run `revdepcheck::cloud_details(, "covidcast")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(covidcast)
- We encourage COVIDcast API users to register on our mailing list:
- https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api
- We'll send announcements about new data sources, package updates,
- server maintenance, and new features.
- >
- ...
- • plot/default-county-choropleth.svg
- • plot/default-hrr-choropleth-with-include.svg
- • plot/default-msa-choropleth-with-include.svg
- • plot/default-state-choropleth-with-include.svg
- • plot/default-state-choropleth-with-range.svg
- • plot/state-choropleth-with-no-metadata.svg
- • plot/state-line-graph-with-range.svg
- • plot/state-line-graph-with-stderrs.svg
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘correlation-utils.Rmd’ using rmarkdown
- --- finished re-building ‘correlation-utils.Rmd’
-
- --- re-building ‘covidcast.Rmd’ using rmarkdown
- ```
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 20 marked UTF-8 strings
- ```
-
-# cowplot
-
-
-
-* Version: 1.1.3
-* GitHub: https://github.com/wilkelab/cowplot
-* Source code: https://github.com/cran/cowplot
-* Date/Publication: 2024-01-22 23:22:51 UTC
-* Number of recursive dependencies: 96
-
-Run `revdepcheck::cloud_details(, "cowplot")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(cowplot)
- >
- > test_check("cowplot")
- [ FAIL 1 | WARN 4 | SKIP 7 | PASS 54 ]
-
- ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
- ...
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test_ggdraw.R:7:3'): basic ggdraw usage ───────────────────────────
- methods::is(g) not equal to "gg".
- 1/1 mismatches
- x[1]: "ggplot2::ggplot"
- y[1]: "gg"
-
- [ FAIL 1 | WARN 4 | SKIP 7 | PASS 54 ]
- Error: Test failures
- Execution halted
- ```
-
-# ctrialsgov
-
-
-
-* Version: 0.2.5
-* GitHub: NA
-* Source code: https://github.com/cran/ctrialsgov
-* Date/Publication: 2021-10-18 16:00:02 UTC
-* Number of recursive dependencies: 96
-
-Run `revdepcheck::cloud_details(, "ctrialsgov")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ctrialsgov)
- >
- > test_check("ctrialsgov")
- [NCT04553939] ible Local Advanved |Bladder| Cancer
- [NCT03517995] of Sulforaphane in |Bladder| Cancer Chemoprevent
- [NCT04210479] Comparison of |Bladder| Filling vs. Non-Fil
- ...
- [1] "ctgov_bar_plot" - "gg" [2]
- [2] "ggplot2::ggplot" -
- [3] "ggplot" -
- [4] "ggplot2::gg" -
- [5] "S7_object" -
- [6] "gg" - "ggplot" [3]
-
- [ FAIL 1 | WARN 6 | SKIP 0 | PASS 44 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 1350 marked UTF-8 strings
- ```
-
-# cvms
-
-
-
-* Version: 1.7.0
-* GitHub: https://github.com/ludvigolsen/cvms
-* Source code: https://github.com/cran/cvms
-* Date/Publication: 2025-03-07 11:30:07 UTC
-* Number of recursive dependencies: 152
-
-Run `revdepcheck::cloud_details(, "cvms")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(cvms)
- >
- > if (require("xpectr")) {
- + test_check("cvms")
- + }
- Loading required package: xpectr
- ...
- names for target but not for current
- ── Failure ('test_plotting_functions.R:359:3'): plot_confusion_matrix() with sum tiles, class order, and intensity_by percentage ──
- `labels` not equal to list(...).
- Attributes: < names for target but not for current >
- Attributes: < Length mismatch: comparison on first 0 components >
- Length mismatch: comparison on first 4 components
-
- [ FAIL 15 | WARN 0 | SKIP 71 | PASS 3602 ]
- Error: Test failures
- Execution halted
- ```
-
-# cylcop
-
-
-
-* Version: 0.2.0
-* GitHub: https://github.com/r-lib/devtools
-* Source code: https://github.com/cran/cylcop
-* Date/Publication: 2022-10-29 22:00:21 UTC
-* Number of recursive dependencies: 95
-
-Run `revdepcheck::cloud_details(, "cylcop")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘cylcop-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: plot_circ_hist
- > ### Title: Circular Histogram of Turn Angles
- > ### Aliases: plot_circ_hist
- >
- > ### ** Examples
- >
- > set.seed(123)
- ...
- 23. │ └─l$compute_geom_2(d, theme = plot@theme)
- 24. │ └─ggplot2 (local) compute_geom_2(..., self = self)
- 25. │ └─self$geom$use_defaults(...)
- 26. │ └─ggplot2 (local) use_defaults(..., self = self)
- 27. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
- 28. │ └─vctrs::list_sizes(x)
- 29. └─vctrs:::stop_scalar_type(``(``), "x$label", ``)
- 30. └─vctrs:::stop_vctrs(...)
- 31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
- Execution halted
- ```
-
-## In both
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) gammamix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) gammamix.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) gammamix.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) gammamix.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) joint.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) joint.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) joint.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) lnormmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) lnormmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) lnormmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
- ...
- checkRd: (-1) vonmisesmix.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) vonmisesmix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) weibullmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) weibullmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) weibullmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) weibullmix.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) wrappedcauchy.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) wrappedcauchy.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) wrappedcauchy.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) wrappedcauchy.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
- ```
-
-# D2MCS
-
-
-
-* Version: 1.0.1
-* GitHub: https://github.com/drordas/D2MCS
-* Source code: https://github.com/cran/D2MCS
-* Date/Publication: 2022-08-23 11:40:02 UTC
-* Number of recursive dependencies: 178
-
-Run `revdepcheck::cloud_details(, "D2MCS")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘test_all.R’
- Running the tests in ‘tests/test_all.R’ failed.
- Complete output:
- > testthat::test_check("D2MCS")
- Loading required package: D2MCS
- [ FAIL 5 | WARN 6 | SKIP 15 | PASS 755 ]
-
- ══ Skipped tests (15) ══════════════════════════════════════════════════════════
- • On CRAN (2): 'test_D2MCS.R:129:3', 'test_D2MCS.R:213:3'
- • {ranger} is not installed (13): 'test_D2MCS.R:411:3',
- ...
- ── Failure ('test_clustering.strategies.TypeBasedStrategy.R:226:3'): TypeBasedStrategy works ──
- c("gg", "ggplot") not equal to class(strategyNoReal$plot()).
- Lengths differ: 2 is not 5
- ── Failure ('test_clustering.strategies.TypeBasedStrategy.R:234:3'): TypeBasedStrategy works ──
- c("gg", "ggplot") not equal to class(strategyNoBinary$plot()).
- Lengths differ: 2 is not 5
-
- [ FAIL 5 | WARN 6 | SKIP 15 | PASS 755 ]
- Error: Test failures
- Execution halted
- ```
-
-# dabestr
-
-
-
-* Version: 2025.3.14
-* GitHub: https://github.com/ACCLAB/dabestr
-* Source code: https://github.com/cran/dabestr
-* Date/Publication: 2025-02-26 12:50:02 UTC
-* Number of recursive dependencies: 82
-
-Run `revdepcheck::cloud_details(, "dabestr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/tests.html
- > # * https://testthat.r-lib.org/reference/test_package.html#special-files
- ...
- • 001_plotter/two-groups-unpaired-mean-diff-colour-float-true.svg
- • 001_plotter/two-groups-unpaired-mean-diff-float-false.svg
- • 001_plotter/two-groups-unpaired-mean-diff-float-true.svg
- • 002_forest_plot/deltadelta-forest-plot-mean-diff.svg
- • 002_forest_plot/deltadelta-forest-plot-with-plot-kwargs.svg
- • 002_forest_plot/minimeta-forest-plot-mean-diff.svg
- • 002_forest_plot/minimeta-forest-plot-median-diff.svg
- • 002_forest_plot/minimeta-forest-plot-with-plot-kwargs.svg
- Error: Test failures
- Execution halted
- ```
-
-# daiquiri
-
-
-
-* Version: 1.1.1
-* GitHub: https://github.com/ropensci/daiquiri
-* Source code: https://github.com/cran/daiquiri
-* Date/Publication: 2023-07-18 16:50:09 UTC
-* Number of recursive dependencies: 104
-
-Run `revdepcheck::cloud_details(, "daiquiri")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(daiquiri)
- >
- > test_check("daiquiri")
-
- Quitting from report_htmldoc.Rmd:466-528 [daiquiri-individual-fields]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- ...
- 36. └─rlang::abort(message, ..., call = call, arg = arg)
-
- [ FAIL 4 | WARN 0 | SKIP 8 | PASS 472 ]
- Deleting unused snapshots:
- • aggregate_data/test_[ALL_FIELDS_COMBINED].csv
- • aggregate_data/test_[DUPLICATES].csv
- • aggregate_data/test_col1.csv
- • aggregate_data/test_col2.csv
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘daiquiri.Rmd’ using rmarkdown
- ```
-
-# DAISIEprep
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/joshwlambert/DAISIEprep
-* Source code: https://github.com/cran/DAISIEprep
-* Date/Publication: 2024-12-18 00:20:02 UTC
-* Number of recursive dependencies: 145
-
-Run `revdepcheck::cloud_details(, "DAISIEprep")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(DAISIEprep)
- >
- > test_check("DAISIEprep")
- [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ]
-
- ══ Skipped tests (14) ══════════════════════════════════════════════════════════
- ...
- ── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ───
- `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings.
- ── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ──
- `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings.
- ── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ──
- `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings.
-
- [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ]
- Error: Test failures
- Execution halted
- ```
-
-# dams
-
-
-
-* Version: 0.3.0
-* GitHub: https://github.com/jsta/dams
-* Source code: https://github.com/cran/dams
-* Date/Publication: 2020-05-20 16:00:03 UTC
-* Number of recursive dependencies: 87
-
-Run `revdepcheck::cloud_details(, "dams")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘dams.Rmd’ using rmarkdown
- ```
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 5 marked UTF-8 strings
- ```
-
-# Deducer
-
-
-
-* Version: 0.9-0
-* GitHub: NA
-* Source code: https://github.com/cran/Deducer
-* Date/Publication: 2025-05-07 13:50:06 UTC
-* Number of recursive dependencies: 114
-
-Run `revdepcheck::cloud_details(, "Deducer")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘Deducer’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘Deducer’
- See ‘/tmp/workdir/Deducer/new/Deducer.Rcheck/00install.out’ for details.
- ```
-
-# dendextend
-
-
-
-* Version: 1.19.0
-* GitHub: https://github.com/talgalili/dendextend
-* Source code: https://github.com/cran/dendextend
-* Date/Publication: 2024-11-15 10:40:06 UTC
-* Number of recursive dependencies: 128
-
-Run `revdepcheck::cloud_details(, "dendextend")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- >
- > library(dendextend)
-
- ---------------------
- Welcome to dendextend version 1.19.0
- Type citation('dendextend') for how to cite the package.
- ...
- [ FAIL 1 | WARN 2 | SKIP 0 | PASS 872 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-ggdend.R:168:4'): ggplot doesn't have warnings for dendrograms ──
- names(ggplot_build(g)) not identical to c("data", "layout", "plot").
- target is NULL, current is character
-
- [ FAIL 1 | WARN 2 | SKIP 0 | PASS 872 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Packages which this enhances but not available for checking:
- 'ggdendro', 'dendroextras', 'Hmisc', 'WGCNA', 'moduleColor',
- 'distory', 'phangorn', 'zoo'
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 6.9Mb
- sub-directories of 1Mb or more:
- doc 5.8Mb
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Packages unavailable to check Rd xrefs: ‘WGCNA’, ‘dendroextras’, ‘moduleColor’, ‘distory’, ‘phangorn’, ‘ggdendro’, ‘zoo’
- ```
-
-# DImodelsVis
-
-
-
-* Version: 1.0.1
-* GitHub: NA
-* Source code: https://github.com/cran/DImodelsVis
-* Date/Publication: 2024-02-26 14:10:15 UTC
-* Number of recursive dependencies: 111
-
-Run `revdepcheck::cloud_details(, "DImodelsVis")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘DImodelsVis-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: conditional_ternary
- > ### Title: Conditional ternary diagrams
- > ### Aliases: conditional_ternary
- >
- > ### ** Examples
- >
- > library(DImodels)
- ...
- 14. │ └─base::withCallingHandlers(...)
- 15. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
- 16. └─l$compute_position(d, layout)
- 17. └─ggplot2 (local) compute_position(..., self = self)
- 18. └─self$position$use_defaults(data, self$aes_params)
- 19. └─ggplot2 (local) use_defaults(..., self = self)
- 20. └─ggplot2:::check_aesthetics(new, nrow(data))
- 21. └─cli::cli_abort(...)
- 22. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘DImodelsVis-with-complex-models.Rmd’ using rmarkdown
- ```
-
-# directlabels
-
-
-
-* Version: 2025.5.20
-* GitHub: https://github.com/tdhock/directlabels
-* Source code: https://github.com/cran/directlabels
-* Date/Publication: 2025-05-20 10:50:02 UTC
-* Number of recursive dependencies: 79
-
-Run `revdepcheck::cloud_details(, "directlabels")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘examples.Rmd’ using knitr
- ```
-
-# DiSCos
-
-
-
-* Version: 0.1.1
-* GitHub: https://github.com/Davidvandijcke/DiSCos
-* Source code: https://github.com/cran/DiSCos
-* Date/Publication: 2024-07-23 03:30:03 UTC
-* Number of recursive dependencies: 118
-
-Run `revdepcheck::cloud_details(, "DiSCos")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
- > # * https://testthat.r-lib.org/articles/special-files.html
- ...
- `expected`: TRUE
- ── Failure ('test-DiSCoTEA.R:142:3'): cdfDiff works ────────────────────────────
- typeof(discot$plot) == "list" is not TRUE
-
- `actual`: FALSE
- `expected`: TRUE
-
- [ FAIL 8 | WARN 2 | SKIP 1 | PASS 107 ]
- Error: Test failures
- Execution halted
- ```
-
-# distributions3
-
-
-
-* Version: 0.2.2
-* GitHub: https://github.com/alexpghayes/distributions3
-* Source code: https://github.com/cran/distributions3
-* Date/Publication: 2024-09-16 16:20:02 UTC
-* Number of recursive dependencies: 88
-
-Run `revdepcheck::cloud_details(, "distributions3")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(distributions3)
-
- Attaching package: 'distributions3'
-
- The following object is masked from 'package:stats':
-
- ...
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-plot.R:50:3'): ggplot2 implementation works ──────────────────
- `print(gg1)` produced warnings.
- ── Failure ('test-plot.R:56:3'): ggplot2 implementation works ──────────────────
- `print(gg3)` produced warnings.
-
- [ FAIL 2 | WARN 14 | SKIP 0 | PASS 2766 ]
- Error: Test failures
- Execution halted
- ```
-
-# dittoViz
-
-
-
-* Version: 1.0.3
-* GitHub: https://github.com/dtm2451/dittoViz
-* Source code: https://github.com/cran/dittoViz
-* Date/Publication: 2025-02-25 18:30:02 UTC
-* Number of recursive dependencies: 95
-
-Run `revdepcheck::cloud_details(, "dittoViz")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘dittoViz-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: freqPlot
- > ### Title: Plot discrete observation frequencies per sample and per
- > ### grouping
- > ### Aliases: freqPlot
- >
- > ### ** Examples
- >
- ...
- ▆
- 1. └─dittoViz::freqPlot(...)
- 2. └─dittoViz::yPlot(...)
- 3. └─dittoViz:::.yPlot_add_data_y_direction(...)
- 4. └─ggplot2::geom_violin(draw_quantiles = vlnplot.quantiles)
- 5. └─ggplot2:::check_numeric(draw_quantiles)
- 6. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
- 7. └─ggplot2:::stop_input_type(...)
- 8. └─rlang::abort(message, ..., call = call, arg = arg)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(dittoViz)
- Loading required package: ggplot2
- > test_check("dittoViz")
- Picking joint bandwidth of 11.2
- Picking joint bandwidth of 11.2
- Picking joint bandwidth of 11.2
- ...
- 6. └─dittoViz:::.yPlot_add_data_y_direction(...)
- 7. └─ggplot2::geom_violin(draw_quantiles = vlnplot.quantiles)
- 8. └─ggplot2:::check_numeric(draw_quantiles)
- 9. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
- 10. └─ggplot2:::stop_input_type(...)
- 11. └─rlang::abort(message, ..., call = call, arg = arg)
-
- [ FAIL 37 | WARN 19 | SKIP 0 | PASS 220 ]
- Error: Test failures
- Execution halted
- ```
-
-# duke
-
-
-
-* Version: 0.0.3
-* GitHub: https://github.com/aidangildea/duke
-* Source code: https://github.com/cran/duke
-* Date/Publication: 2023-12-15 21:50:16 UTC
-* Number of recursive dependencies: 85
-
-Run `revdepcheck::cloud_details(, "duke")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/tests.html
- > # * https://testthat.r-lib.org/reference/test_package.html#special-files
- ...
- 2. │ └─testthat:::expect_condition_matching(...)
- 3. │ └─testthat:::quasi_capture(...)
- 4. │ ├─testthat (local) .capture(...)
- 5. │ │ └─base::withCallingHandlers(...)
- 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
- 7. └─testthat::expect_equal(ggplot2::layer_data(p3)$fill[9], "#B5B5B5")
-
- [ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘duke.Rmd’ using rmarkdown
- ```
-
-# easyalluvial
-
-
-
-* Version: 0.3.2
-* GitHub: https://github.com/erblast/easyalluvial
-* Source code: https://github.com/cran/easyalluvial
-* Date/Publication: 2023-12-07 13:40:06 UTC
-* Number of recursive dependencies: 148
-
-Run `revdepcheck::cloud_details(, "easyalluvial")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(easyalluvial)
- >
- > test_check("easyalluvial")
- [ FAIL 3 | WARN 6 | SKIP 18 | PASS 41 ]
-
- ══ Skipped tests (18) ══════════════════════════════════════════════════════════
- ...
- • plot_marginal_histograms/mod-num-num.svg
- • plot_marginal_histograms/mod-num-pred-train.svg
- • plot_marginal_histograms/plot-hist-long-cat-fill.svg
- • plot_marginal_histograms/plot-hist-long-cat.svg
- • plot_marginal_histograms/plot-hist-long-num-has-fill.svg
- • plot_marginal_histograms/plot-hist-long-num-is-fill.svg
- • plot_marginal_histograms/plot-hist-long-num.svg
- • plot_marginal_histograms/plot-hist-wide-num.svg
- Error: Test failures
- Execution halted
- ```
-
-# easysurv
-
-
-
-* Version: 2.0.1
-* GitHub: https://github.com/Maple-Health-Group/easysurv
-* Source code: https://github.com/cran/easysurv
-* Date/Publication: 2024-06-21 10:30:06 UTC
-* Number of recursive dependencies: 152
-
-Run `revdepcheck::cloud_details(, "easysurv")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘easysurv-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: get_km
- > ### Title: Generate Kaplan-Meier estimates
- > ### Aliases: get_km
- >
- > ### ** Examples
- >
- > km_results <- get_km(
- ...
- Poor Poor 228 145 3.101736 0.1772520 2.183562 1.978082 2.619178
- Median follow-up
- Good 4.452055
- Medium 4.712329
- Poor 4.115068
-
- Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = "{n.risk}", :
- argument "risktable_height" is missing, with no default
- Calls: ... ggsurvfit_build -> -> .construct_risktable
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘easysurv.Rmd’ using rmarkdown
-
- Quitting from easysurv.Rmd:148-157 [km]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error in `.construct_risktable()`:
- ! argument "risktable_height" is missing, with no default
- ---
- Backtrace:
- ...
-
- Error: processing vignette 'easysurv.Rmd' failed with diagnostics:
- argument "risktable_height" is missing, with no default
- --- failed re-building ‘easysurv.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘easysurv.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# ecocbo
-
-
-
-* Version: 0.12.0
-* GitHub: NA
-* Source code: https://github.com/cran/ecocbo
-* Date/Publication: 2024-08-21 08:00:02 UTC
-* Number of recursive dependencies: 114
-
-Run `revdepcheck::cloud_details(, "ecocbo")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/tests.html
- > # * https://testthat.r-lib.org/reference/test_package.html#special-files
- ...
- |======================================================================| 100%
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 26 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-plot_power.R:5:3'): plots are plotted ────────────────────────
- plot_power(epiBetaR, n = 4, m = 4, method = "power") has type 'object', not 'list'.
-
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 26 ]
- Error: Test failures
- Execution halted
- ```
-
-# EGM
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/shah-in-boots/EGM
-* Source code: https://github.com/cran/EGM
-* Date/Publication: 2024-05-23 16:10:05 UTC
-* Number of recursive dependencies: 73
-
-Run `revdepcheck::cloud_details(, "EGM")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(EGM)
- Loading required package: vctrs
- Loading required package: data.table
- > EGM::set_wfdb_path("/usr/local/bin")
- >
- > test_check("EGM")
- ...
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-ggm.R:63:2'): theming works ──────────────────────────────────
- g$labels$x (`actual`) not equal to "sample" (`expected`).
-
- `actual` is NULL
- `expected` is a character vector ('sample')
-
- [ FAIL 1 | WARN 9 | SKIP 19 | PASS 43 ]
- Error: Test failures
- Execution halted
- ```
-
-# eks
-
-
-
-* Version: 1.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/eks
-* Date/Publication: 2025-05-18 17:30:02 UTC
-* Number of recursive dependencies: 78
-
-Run `revdepcheck::cloud_details(, "eks")` for more info
-
-
-
-## Newly broken
-
-* checking S3 generic/method consistency ... WARNING
- ```
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.scale_rem:
- function(object, plot, object_name)
- See section ‘Generic functions and methods’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-# ENMTools
-
-
-
-* Version: 1.1.2
-* GitHub: NA
-* Source code: https://github.com/cran/ENMTools
-* Date/Publication: 2024-01-16 12:50:11 UTC
-* Number of recursive dependencies: 284
-
-Run `revdepcheck::cloud_details(, "ENMTools")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ENMTools)
- Loading required package: dismo
- Loading required package: raster
- Loading required package: sp
- >
- > test_check("ENMTools")
- ...
- `actual`: FALSE
- `expected`: TRUE
- Backtrace:
- ▆
- 1. └─ENMTools (local) expect_enmtools_model(cyreni.glm.raster2) at test_ENMTools.R:249:3
- 2. └─testthat::expect_true(...) at test_ENMTools.R:66:3
-
- [ FAIL 9 | WARN 0 | SKIP 3 | PASS 167 ]
- Error: Test failures
- Execution halted
- ```
-
-# epos
-
-
-
-* Version: 1.1
-* GitHub: https://github.com/bernd-mueller/epos
-* Source code: https://github.com/cran/epos
-* Date/Publication: 2024-03-15 10:10:02 UTC
-* Number of recursive dependencies: 94
-
-Run `revdepcheck::cloud_details(, "epos")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(epos)
- >
- > test_check("epos")
- [ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ...
- [1] 1 - 11 == -10
- Backtrace:
- ▆
- 1. └─testthat::expect_that(length(tanimotobaseline), equals(11)) at test_createTanimotoBaseline.R:47:3
- 2. └─testthat (local) condition(object)
- 3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
-
- [ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘testthat’
- All declared Imports should be used.
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 15 marked UTF-8 strings
- ```
-
-# EQUALSTATS
-
-
-
-* Version: 0.5.0
-* GitHub: NA
-* Source code: https://github.com/cran/EQUALSTATS
-* Date/Publication: 2024-09-23 08:30:02 UTC
-* Number of recursive dependencies: 128
-
-Run `revdepcheck::cloud_details(, "EQUALSTATS")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘EQUALSTATS-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: function.Survival_Analysis
- > ### Title: Perform Survival Analysis
- > ### Aliases: function.Survival_Analysis
- >
- > ### ** Examples
- >
- > # Create simulated data ####
- ...
- > rv$second_menu_choice <- NA
- > rv$entry[[1]] <- "Admission to care home"
- > rv$entry[[2]] <- "Follow-up"
- > rv$entry[[3]] <- "Treatment"
- > # Final function ####
- > Results <- function.Survival_Analysis(Predefined_lists, rv)
- Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = c("{n.risk}", :
- argument "risktable_height" is missing, with no default
- Calls: function.Survival_Analysis
- Execution halted
- ```
-
-## In both
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘lmerTest’
- ```
-
-# equatiomatic
-
-
-
-* Version: 0.3.6
-* GitHub: https://github.com/datalorax/equatiomatic
-* Source code: https://github.com/cran/equatiomatic
-* Date/Publication: 2025-03-10 16:50:09 UTC
-* Number of recursive dependencies: 145
-
-Run `revdepcheck::cloud_details(, "equatiomatic")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘colors.Rmd’ using rmarkdown
- --- finished re-building ‘colors.Rmd’
-
- --- re-building ‘equatiomatic.Rmd’ using rmarkdown
- --- finished re-building ‘equatiomatic.Rmd’
-
- --- re-building ‘forecast-arima.Rmd’ using rmarkdown
- --- finished re-building ‘forecast-arima.Rmd’
-
- --- re-building ‘lme4-lmer.Rmd’ using rmarkdown
- --- finished re-building ‘lme4-lmer.Rmd’
-
- --- re-building ‘plotting-integration.Rmd’ using rmarkdown
- ```
-
-# errors
-
-
-
-* Version: 0.4.3
-* GitHub: https://github.com/r-quantities/errors
-* Source code: https://github.com/cran/errors
-* Date/Publication: 2025-01-18 18:10:05 UTC
-* Number of recursive dependencies: 65
-
-Run `revdepcheck::cloud_details(, "errors")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘errors-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: geom_errors
- > ### Title: Errorbars for 'errors' objects
- > ### Aliases: geom_errors
- >
- > ### ** Examples
- >
- > if (requireNamespace("ggplot2", quietly=TRUE)) {
- ...
- 23. │ └─self$draw_panel(data, panel_params, coord, width = 0.05, height = 0.05)
- 24. │ └─errors (local) draw_panel(...)
- 25. │ ├─base::append(...)
- 26. │ └─ggplot2::GeomErrorbarh$draw_panel(...)
- 27. └─base::.handleSimpleError(...)
- 28. └─rlang (local) h(simpleError(msg, call))
- 29. └─handlers[[1L]](cnd)
- 30. └─cli::cli_abort(...)
- 31. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘rjournal.Rmd’ using rmarkdown
-
- Quitting from rjournal.Rmd:252-272 [plot]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- NULL
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error: processing vignette 'rjournal.Rmd' failed with diagnostics:
- ...
- ℹ Error occurred in the 2nd layer.
- Caused by error in `draw_panel()`:
- ! unused argument (height = NULL)
- --- failed re-building ‘rjournal.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘rjournal.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-## Newly fixed
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘rjournal.Rmd’ using rmarkdown
-
- tlmgr: Remote database at https://mirrors.mit.edu/CTAN/systems/texlive/tlnet
- (revision 75567 of the texlive-scripts package)
- seems to be older than the local installation
- (revision 75579 of texlive-scripts);
- please use a different mirror and/or wait a day or two.
-
- ...
-
- Error: processing vignette 'rjournal.Rmd' failed with diagnostics:
- LaTeX failed to compile /tmp/workdir/errors/old/errors.Rcheck/vign_test/errors/vignettes/rjournal.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See rjournal.log for more info.
- --- failed re-building ‘rjournal.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘rjournal.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# eventstudyr
-
-
-
-* Version: 1.1.3
-* GitHub: https://github.com/JMSLab/eventstudyr
-* Source code: https://github.com/cran/eventstudyr
-* Date/Publication: 2024-03-04 15:00:02 UTC
-* Number of recursive dependencies: 97
-
-Run `revdepcheck::cloud_details(, "eventstudyr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(eventstudyr)
- >
- > test_check("eventstudyr")
- Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument.
- Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument.
- Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument.
- ...
- `expected` is a character vector ('ci_lower')
- ── Failure ('test-EventStudyPlot.R:128:5'): confidence intervals are appropriately present or absent ──
- p_ci$labels$ymax (`actual`) not equal to "ci_upper" (`expected`).
-
- `actual` is NULL
- `expected` is a character vector ('ci_upper')
-
- [ FAIL 6 | WARN 0 | SKIP 0 | PASS 258 ]
- Error: Test failures
- Execution halted
- ```
-
-# ez
-
-
-
-* Version: 4.4-0
-* GitHub: https://github.com/mike-lawrence/ez
-* Source code: https://github.com/cran/ez
-* Date/Publication: 2016-11-02 18:17:31
-* Number of recursive dependencies: 62
-
-Run `revdepcheck::cloud_details(, "ez")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ez-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: ezPlot
- > ### Title: Plot data from a factorial experiment
- > ### Aliases: ezPlot
- >
- > ### ** Examples
- >
- > #Read in the ANT data (see ?ANT).
- ...
- Backtrace:
- ▆
- 1. └─ez::ezPlot(...)
- 2. ├─base::eval(parse(text = p))
- 3. │ └─base::eval(parse(text = p))
- 4. └─ggplot2::facet_grid(facets = . ~ group, scales = "free_y")
- 5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)")
- 6. └─lifecycle:::deprecate_stop0(msg)
- 7. └─rlang::cnd_signal(...)
- Execution halted
- ```
-
-## In both
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ?
- ```
-
-# ezEDA
-
-
-
-* Version: 0.1.1
-* GitHub: https://github.com/kviswana/ezEDA
-* Source code: https://github.com/cran/ezEDA
-* Date/Publication: 2021-06-29 04:40:10 UTC
-* Number of recursive dependencies: 76
-
-Run `revdepcheck::cloud_details(, "ezEDA")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ezEDA)
- >
- > test_check("ezEDA")
- [ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ...
- ── Error ('test_two_measures_relationship.R:19:3'): y axis is labeled 'hwy' ────
- Error in `expect_match(p$labels$y, "hwy")`: is.character(act$val) is not TRUE
- Backtrace:
- ▆
- 1. └─testthat::expect_match(p$labels$y, "hwy") at test_two_measures_relationship.R:19:3
- 2. └─base::stopifnot(is.character(act$val))
-
- [ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ]
- Error: Test failures
- Execution halted
- ```
-
-# ezplot
-
-
-
-* Version: 0.7.13
-* GitHub: NA
-* Source code: https://github.com/cran/ezplot
-* Date/Publication: 2024-01-28 11:30:05 UTC
-* Number of recursive dependencies: 105
-
-Run `revdepcheck::cloud_details(, "ezplot")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ezplot-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: variable_plot
- > ### Title: variable_plot
- > ### Aliases: variable_plot
- >
- > ### ** Examples
- >
- > suppressPackageStartupMessages(library(tsibble))
- > library(tsibbledata)
- > variable_plot(ansett, "Week", "Passengers", facet_x = "Class", yoy = TRUE)
- Error: object properties are invalid:
- - @linewidth must be , , or , not
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ezplot)
- > suppressPackageStartupMessages(library(tsibble))
- >
- > test_check("ezplot")
- [ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ]
-
- ...
- 2. ├─ggplot2::theme(...)
- 3. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL)
- 4. │ └─base::mget(args, envir = env)
- 5. └─ggplot2::element_rect(fill = NA, colour = NA, linewidth = NA)
- 6. └─S7::new_object(...)
- 7. └─S7::validate(object, recursive = !parent_validated)
-
- [ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘bar_plot.Rmd’ using rmarkdown
- ```
-
-# fabletools
-
-
-
-* Version: 0.5.0
-* GitHub: https://github.com/tidyverts/fabletools
-* Source code: https://github.com/cran/fabletools
-* Date/Publication: 2024-09-17 07:30:02 UTC
-* Number of recursive dependencies: 104
-
-Run `revdepcheck::cloud_details(, "fabletools")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(dplyr)
-
- Attaching package: 'dplyr'
-
- The following object is masked from 'package:testthat':
-
- ...
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-graphics.R:327:3'): autoplot_dcmp_ts() ───────────────────────
- `print(p)` produced messages.
- ── Failure ('test-graphics.R:346:3'): autoplot_dcmp_ts() ───────────────────────
- `print(p)` produced messages.
-
- [ FAIL 2 | WARN 0 | SKIP 1 | PASS 292 ]
- Error: Test failures
- Execution halted
- ```
-
-# fairmodels
-
-
-
-* Version: 1.2.1
-* GitHub: https://github.com/ModelOriented/fairmodels
-* Source code: https://github.com/cran/fairmodels
-* Date/Publication: 2022-08-23 19:50:06 UTC
-* Number of recursive dependencies: 83
-
-Run `revdepcheck::cloud_details(, "fairmodels")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘fairmodels-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: fairness_heatmap
- > ### Title: Fairness heatmap
- > ### Aliases: fairness_heatmap
- >
- > ### ** Examples
- >
- >
- ...
- [32m Fairness object created succesfully [39m
- >
- >
- > fh <- fairness_heatmap(fobject)
- >
- > plot(fh)
- Error in rep(yes, length.out = len) :
- attempt to replicate an object of type 'object'
- Calls: plot -> plot.fairness_heatmap -> ifelse
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(fairmodels)
- >
- >
- > test_check("fairmodels")
- Welcome to DALEX (version: 2.4.3).
- Find examples and detailed introduction at: http://ema.drwhy.ai/
- ...
- 5. │ └─base::class(object) %in% class
- 6. ├─fairmodels::plot_fairmodels(fc, type = "fairness_heatmap")
- 7. └─fairmodels:::plot_fairmodels.fairness_object(fc, type = "fairness_heatmap")
- 8. └─fairmodels:::plot_fairmodels.default(x, type, ...)
- 9. └─fairmodels:::plot.fairness_heatmap(fairness_heatmap(x, ...))
- 10. └─base::ifelse(...)
-
- [ FAIL 3 | WARN 2 | SKIP 0 | PASS 299 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘Advanced_tutorial.Rmd’ using rmarkdown
- ```
-
-## In both
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) choose_metric.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) choose_metric.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) choose_metric.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) confusion_matrx.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) confusion_matrx.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) confusion_matrx.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) confusion_matrx.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) disparate_impact_remover.Rd:28: Lost braces
- 28 | pigeonholing. The number of pigeonholes is fixed and equal to min{101, unique(a)}, where a is vector with values for subgroup. So if some subgroup is not numerous and
- | ^
- ...
- checkRd: (-1) group_metric.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) group_metric.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) group_metric.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) group_metric.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) metric_scores.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) metric_scores.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) performance_and_fairness.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) performance_and_fairness.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) performance_and_fairness.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) performance_and_fairness.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
- ```
-
-# fairness
-
-
-
-* Version: 1.2.2
-* GitHub: https://github.com/kozodoi/fairness
-* Source code: https://github.com/cran/fairness
-* Date/Publication: 2021-04-14 15:00:02 UTC
-* Number of recursive dependencies: 149
-
-Run `revdepcheck::cloud_details(, "fairness")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘fairness’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fairness’
- See ‘/tmp/workdir/fairness/new/fairness.Rcheck/00install.out’ for details.
- ```
-
-# faux
-
-
-
-* Version: 1.2.2
-* GitHub: https://github.com/debruine/faux
-* Source code: https://github.com/cran/faux
-* Date/Publication: 2025-01-15 09:10:01 UTC
-* Number of recursive dependencies: 127
-
-Run `revdepcheck::cloud_details(, "faux")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘faux-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: norm2likert
- > ### Title: Convert normal to likert
- > ### Aliases: norm2likert
- >
- > ### ** Examples
- >
- >
- ...
- 2. └─plt$build()
- 3. └─private$addLimits(margThemed)
- 4. └─ggplot2::scale_x_continuous(limits = limits, oob = scales::squish)
- 5. └─ggplot2::continuous_scale(...)
- 6. └─ggplot2:::check_continuous_limits(limits, call = call)
- 7. └─ggplot2:::check_numeric(limits, arg = arg, call = call, allow_na = TRUE)
- 8. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
- 9. └─ggplot2:::stop_input_type(...)
- 10. └─rlang::abort(message, ..., call = call, arg = arg)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(faux)
-
- ************
- Welcome to faux. For support and examples visit:
- https://debruine.github.io/faux/
- - Get and set global package options with: faux_options()
- ...
- class(p) not equal to c("gg", "ggplot").
- Lengths differ: 5 is not 2
- Backtrace:
- ▆
- 1. └─global expect_equal(class(p), c("gg", "ggplot")) at test-plot_design.R:288:3
- 2. └─testthat::expect_equal(..., check.environment = FALSE)
-
- [ FAIL 19 | WARN 0 | SKIP 22 | PASS 1351 ]
- Error: Test failures
- Execution halted
- ```
-
-# feasts
-
-
-
-* Version: 0.4.1
-* GitHub: https://github.com/tidyverts/feasts
-* Source code: https://github.com/cran/feasts
-* Date/Publication: 2024-09-25 23:40:02 UTC
-* Number of recursive dependencies: 97
-
-Run `revdepcheck::cloud_details(, "feasts")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(feasts)
- Loading required package: fabletools
- >
- > test_check("feasts")
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
-
- ...
- ▆
- 1. ├─ggplot2::ggplot_build(p[[1]]) at test-graphics.R:194:3
- 2. ├─ggplot2:::ggplot_build.default(p[[1]])
- 3. │ └─ggplot2::build_ggplot(plot)
- 4. │ └─S7::S7_dispatch()
- 5. └─S7:::method_lookup_error("build_ggplot", ``)
-
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
- Error: Test failures
- Execution halted
- ```
-
-# fec16
-
-
-
-* Version: 0.1.4
-* GitHub: https://github.com/baumer-lab/fec16
-* Source code: https://github.com/cran/fec16
-* Date/Publication: 2023-08-09 10:50:14 UTC
-* Number of recursive dependencies: 91
-
-Run `revdepcheck::cloud_details(, "fec16")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘fec_vignette.Rmd’ using rmarkdown
- ```
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 20 marked UTF-8 strings
- ```
-
-# flextable
-
-
-
-* Version: 0.9.9
-* GitHub: https://github.com/davidgohel/flextable
-* Source code: https://github.com/cran/flextable
-* Date/Publication: 2025-05-31 09:40:02 UTC
-* Number of recursive dependencies: 131
-
-Run `revdepcheck::cloud_details(, "flextable")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘flextable-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: gg_chunk
- > ### Title: 'ggplots' chunk wrapper
- > ### Aliases: gg_chunk
- >
- > ### ** Examples
- >
- > library(data.table)
- ...
- Loading required package: ggplot2
- a flextable object.
- col_keys: `Species`, `gg`
- header has 1 row(s)
- body has 3 row(s)
- original dataset sample:
- Error in format.default(unlist(xx), ...) :
- c("Found no format() method for class \"ggplot2::ggplot\"", "Found no format() method for class \"ggplot\"", "Found no format() method for class \"ggplot2::gg\"", "Found no format() method for class \"S7_object\"", "Found no format() method for class \"gg\"")
- Calls: ... format -> format.default -> lapply -> FUN -> format.default
- Execution halted
- ```
-
-# fmf
-
-
-
-* Version: 1.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/fmf
-* Date/Publication: 2020-09-03 07:32:12 UTC
-* Number of recursive dependencies: 175
-
-Run `revdepcheck::cloud_details(, "fmf")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘fmf’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fmf’
- See ‘/tmp/workdir/fmf/new/fmf.Rcheck/00install.out’ for details.
- ```
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-# forestPSD
-
-
-
-* Version: 1.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/forestPSD
-* Date/Publication: 2024-11-11 16:50:05 UTC
-* Number of recursive dependencies: 44
-
-Run `revdepcheck::cloud_details(, "forestPSD")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘forestPSD-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: psdfun
- > ### Title: Regression analysis for survival curves.
- > ### Aliases: psdfun
- >
- > ### ** Examples
- >
- > data(Npop)
- ...
- 16. │ └─l$compute_geom_2(d, theme = plot@theme)
- 17. │ └─ggplot2 (local) compute_geom_2(..., self = self)
- 18. │ └─self$geom$use_defaults(...)
- 19. │ └─ggplot2 (local) use_defaults(..., self = self)
- 20. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
- 21. │ └─vctrs::list_sizes(x)
- 22. └─vctrs:::stop_scalar_type(``(``), "x$label", ``)
- 23. └─vctrs:::stop_vctrs(...)
- 24. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘ggplot2’ ‘reshape2’
- All declared Imports should be used.
- ```
-
-# FunnelPlotR
-
-
-
-* Version: 0.5.0
-* GitHub: https://github.com/nhs-r-community/FunnelPlotR
-* Source code: https://github.com/cran/FunnelPlotR
-* Date/Publication: 2024-04-12 08:40:02 UTC
-* Number of recursive dependencies: 81
-
-Run `revdepcheck::cloud_details(, "FunnelPlotR")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘FunnelPlotR-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: funnel_plot
- > ### Title: Funnel plots for comparing institutional performance
- > ### Aliases: funnel_plot
- >
- > ### ** Examples
- >
- > # We will use the 'medpar' dataset from the 'COUNT' package.
- ...
- >
- > # Get predicted values for building ratio
- > medpar$prds<- predict(mod, type="response")
- >
- > # Draw plot, returning just the plot object
- > fp<-funnel_plot(medpar, denominator=prds, numerator=los,
- + group = provnum, limit=95, title="An example funnel plot")
- Error in validate_funnel_plot(rtn) : Invalid ggplot object
- Calls: funnel_plot -> validate_funnel_plot
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(FunnelPlotR)
- >
- > test_check("FunnelPlotR")
- [ FAIL 2 | WARN 0 | SKIP 0 | PASS 34 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ...
- ── Error ('test-funnel_plot.R:7:3'): `funnel_plot()` works with input and returns expected list ──
- Error in `validate_funnel_plot(rtn)`: Invalid ggplot object
- Backtrace:
- ▆
- 1. └─FunnelPlotR::funnel_plot(dt, num, denom, group) at test-funnel_plot.R:7:3
- 2. └─FunnelPlotR:::validate_funnel_plot(rtn)
-
- [ FAIL 2 | WARN 0 | SKIP 0 | PASS 34 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘changing_funnel_plot_options.Rmd’ using rmarkdown
-
- Quitting from changing_funnel_plot_options.Rmd:32-49 [dtsetup]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error in `validate_funnel_plot()`:
- ! Invalid ggplot object
- ---
- Backtrace:
- ...
- ▆
- 1. └─FunnelPlotR::funnel_plot(...)
- 2. └─FunnelPlotR:::validate_funnel_plot(rtn)
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error: processing vignette 'changing_funnel_plot_options.Rmd' failed with diagnostics:
- Invalid ggplot object
- --- failed re-building ‘changing_funnel_plot_options.Rmd’
-
- --- re-building ‘funnel_plots.Rmd’ using rmarkdown
- ```
-
-# gapfill
-
-
-
-* Version: 0.9.6-1
-* GitHub: https://github.com/florafauna/gapfill
-* Source code: https://github.com/cran/gapfill
-* Date/Publication: 2021-02-12 10:10:05 UTC
-* Number of recursive dependencies: 67
-
-Run `revdepcheck::cloud_details(, "gapfill")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘run-all.R’
- Running the tests in ‘tests/run-all.R’ failed.
- Complete output:
- > library(testthat)
- > test_check('gapfill')
- Loading required package: gapfill
- Loading required package: ggplot2
- --> See ?Gapfill and https://doi.org/10.1109/TGRS.2017.2785240 <--
- [ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ]
-
- ...
- ── Failure ('test-Image.R:10:4'): Image ────────────────────────────────────────
- class(Image(unname(ndvi))) not equal to c("gg", "ggplot").
- Lengths differ: 5 is not 2
- ── Failure ('test-Image.R:11:4'): Image ────────────────────────────────────────
- class(Image(ndvi, zlim = c(1, 2))) not equal to c("gg", "ggplot").
- Lengths differ: 5 is not 2
-
- [ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Packages which this enhances but not available for checking:
- 'raster', 'doParallel', 'doMPI'
- ```
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) Gapfill.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) Gapfill.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) Gapfill.Rd:71-77: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) Gapfill.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) Gapfill.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) Gapfill.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) Gapfill.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) Gapfill.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
- checkRd: (-1) ndvi.Rd:10: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ndvi.Rd:11: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ndvi.Rd:12: Lost braces in \itemize; meant \describe ?
- checkRd: (-1) ndvi.Rd:13: Lost braces in \itemize; meant \describe ?
- ```
-
-# genekitr
-
-
-
-* Version: 1.2.8
-* GitHub: https://github.com/GangLiLab/genekitr
-* Source code: https://github.com/cran/genekitr
-* Date/Publication: 2024-09-06 13:00:06 UTC
-* Number of recursive dependencies: 196
-
-Run `revdepcheck::cloud_details(, "genekitr")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘genekitr-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: plotVenn
- > ### Title: Venn plot for groups of genes
- > ### Aliases: plotVenn
- >
- > ### ** Examples
- >
- > k1 = requireNamespace("ComplexUpset",quietly = TRUE)
- ...
- 32. │ └─ggplot2 (local) `method(merge_element, list(ggplot2::element, class_any))`(...)
- 33. │ └─S7::props(old, idx)
- 34. │ └─S7::check_is_S7(object)
- 35. │ └─base::stop(msg, call. = FALSE)
- 36. └─base::.handleSimpleError(...)
- 37. └─rlang (local) h(simpleError(msg, call))
- 38. └─handlers[[1L]](cnd)
- 39. └─cli::cli_abort(...)
- 40. └─rlang::abort(...)
- Execution halted
- ```
-
-# geneSLOPE
-
-
-
-* Version: 0.38.3
-* GitHub: https://github.com/psobczyk/geneSLOPE
-* Source code: https://github.com/cran/geneSLOPE
-* Date/Publication: 2025-06-20 04:40:02 UTC
-* Number of recursive dependencies: 76
-
-Run `revdepcheck::cloud_details(, "geneSLOPE")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘geneSLOPE’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
- See ‘/tmp/workdir/geneSLOPE/new/geneSLOPE.Rcheck/00install.out’ for details.
- ```
-
-# geofacet
-
-
-
-* Version: 0.2.1
-* GitHub: https://github.com/hafen/geofacet
-* Source code: https://github.com/cran/geofacet
-* Date/Publication: 2023-11-30 08:00:11 UTC
-* Number of recursive dependencies: 93
-
-Run `revdepcheck::cloud_details(, "geofacet")` for more info
-
-
-
-## Newly broken
-
-* checking S3 generic/method consistency ... WARNING
- ```
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.facet_geo_spec:
- function(object, plot, object_name)
- See section ‘Generic functions and methods’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 646 marked UTF-8 strings
- ```
-
-# geomtextpath
-
-
-
-* Version: 0.1.5
-* GitHub: https://github.com/AllanCameron/geomtextpath
-* Source code: https://github.com/cran/geomtextpath
-* Date/Publication: 2025-01-14 17:40:02 UTC
-* Number of recursive dependencies: 91
-
-Run `revdepcheck::cloud_details(, "geomtextpath")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘geomtextpath-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: geom_textsf
- > ### Title: Visualise sf objects with labels
- > ### Aliases: geom_textsf geom_labelsf
- >
- > ### ** Examples
- >
- > ggplot(waterways) +
- ...
- 22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
- 23. │ └─self$draw_panel(...)
- 24. │ └─geomtextpath (local) draw_panel(...)
- 25. │ └─geomtextpath:::sf_textgrob(...)
- 26. └─base::.handleSimpleError(...)
- 27. └─rlang (local) h(simpleError(msg, call))
- 28. └─handlers[[1L]](cnd)
- 29. └─cli::cli_abort(...)
- 30. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(geomtextpath)
- Loading required package: ggplot2
- >
- > test_check("geomtextpath")
- [ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ]
-
- ...
- `expected` is an expression vector
- ── Error ('test-sf.R:91:3'): We can make grobs from sf features ────────────────
- Error in `(x$boxlinewidth %||% defaults$linewidth[type_ind]) * 3.779528`: non-numeric argument to binary operator
- Backtrace:
- ▆
- 1. └─geomtextpath:::sf_textgrob(river, as_textbox = TRUE) at test-sf.R:91:3
-
- [ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ]
- Error: Test failures
- Execution halted
- ```
-
-# gfoRmulaICE
-
-
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/gfoRmulaICE
-* Date/Publication: 2024-12-02 12:50:08 UTC
-* Number of recursive dependencies: 89
-
-Run `revdepcheck::cloud_details(, "gfoRmulaICE")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/tests.html
- > # * https://testthat.r-lib.org/reference/test_package.html#special-files
- ...
- `expected[2:2]`: "ggplot"
- ── Failure ('test_plot.R:534:5'): plot complicated scenario 3 - intervention-specific time options ──
- class(plots) (`actual`) not equal to c("gg", "ggplot") (`expected`).
-
- `actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
- `expected[2:2]`: "ggplot"
-
- [ FAIL 15 | WARN 176 | SKIP 0 | PASS 47 ]
- Error: Test failures
- Execution halted
- ```
-
-# gg1d
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/selkamand/gg1d
-* Source code: https://github.com/cran/gg1d
-* Date/Publication: 2024-12-09 19:40:02 UTC
-* Number of recursive dependencies: 87
-
-Run `revdepcheck::cloud_details(, "gg1d")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘gg1d-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: gg1d
- > ### Title: AutoPlot an entire data.frame
- > ### Aliases: gg1d
- >
- > ### ** Examples
- >
- > path_gg1d <- system.file("example.csv", package = "gg1d")
- ...
- 31. │ └─base::lapply(...)
- 32. │ └─ggplot2 (local) FUN(X[[i]], ...)
- 33. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
- 34. │ └─self$draw_panel(...)
- 35. └─base::.handleSimpleError(...)
- 36. └─rlang (local) h(simpleError(msg, call))
- 37. └─handlers[[1L]](cnd)
- 38. └─cli::cli_abort(...)
- 39. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/tests.html
- > # * https://testthat.r-lib.org/reference/test_package.html#special-files
- ...
- Expected `gg1d(...)` to run without any errors.
- i Actually got a with text:
- Problem while converting geom to grob.
- i Error occurred in the 1st layer.
- Caused by error in `draw_panel()`:
- ! unused arguments (lineend = "butt", linejoin = "mitre")
-
- [ FAIL 9 | WARN 1 | SKIP 2 | PASS 47 ]
- Error: Test failures
- Execution halted
- ```
-
-# ggalign
-
-
-
-* Version: 1.0.2
-* GitHub: https://github.com/Yunuuuu/ggalign
-* Source code: https://github.com/cran/ggalign
-* Date/Publication: 2025-05-14 14:00:08 UTC
-* Number of recursive dependencies: 56
-
-Run `revdepcheck::cloud_details(, "ggalign")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggalign-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: align_dendro
- > ### Title: Plot dendrogram tree
- > ### Aliases: align_dendro
- >
- > ### ** Examples
- >
- > # align_dendro will always add a plot area
- ...
- 37. │ ├─S7::S7_dispatch()
- 38. │ └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...)
- 39. │ └─ggplot2:::add_ggplot(e1, e2, e2name)
- 40. │ ├─ggplot2::ggplot_add(object, p, objectname)
- 41. │ └─ggalign:::ggplot_add.ggalign_design(object, p, objectname)
- 42. └─base::.handleSimpleError(...)
- 43. └─rlang (local) h(simpleError(msg, call))
- 44. └─handlers[[1L]](cnd)
- 45. └─rlang::cnd_signal(e)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
- > # * https://testthat.r-lib.org/articles/special-files.html
- ...
- • plot-align/reorder-left-reverse.svg
- • plot-align/reorder-left.svg
- • plot-align/reorder-right.svg
- • plot-align/reorder-top-reverse.svg
- • plot-align/reorder-top-within-group.svg
- • plot-align/reorder-top.svg
- • plot-align/stack-no-data-dendrogram-input.svg
- • plot-align/stack-no-data-hclust-input.svg
- Error: Test failures
- Execution halted
- ```
-
-* checking S3 generic/method consistency ... WARNING
- ```
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.ggalign_default_expansion:
- function(object, plot, object_name)
-
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.FacetSector:
- function(object, plot, object_name)
-
- ...
- function(plot, ...)
- ggplot_build.ggalign_facet_sector_plot:
- function(plot)
-
- ggplot_build:
- function(plot, ...)
- ggplot_build.ggalign_heatmap:
- function(plot)
- See section ‘Generic functions and methods’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-* checking Rd cross-references ... WARNING
- ```
- Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’
- Missing link or links in Rd file 'scheme_theme.Rd':
- ‘[ggplot2:+.gg]{+.gg()}’
-
- See section 'Cross-references' in the 'Writing R Extensions' manual.
- ```
-
-* checking for code/documentation mismatches ... WARNING
- ```
- Codoc mismatches from Rd file 'scheme_theme.Rd':
- scheme_theme
- Code: function(..., line, rect, text, title, point, polygon, geom,
- spacing, margins, aspect.ratio, axis.title,
- axis.title.x, axis.title.x.top, axis.title.x.bottom,
- axis.title.y, axis.title.y.left, axis.title.y.right,
- axis.text, axis.text.x, axis.text.x.top,
- axis.text.x.bottom, axis.text.y, axis.text.y.left,
- axis.text.y.right, axis.text.theta, axis.text.r,
- axis.ticks, axis.ticks.x, axis.ticks.x.top,
- ...
- strip.text.y.right, strip.switch.pad.grid,
- strip.switch.pad.wrap, complete = FALSE, validate =
- TRUE)
- Argument names in code not in docs:
- point polygon geom spacing margins legend.key.justification
- panel.widths panel.heights
- Mismatches in argument names (first 3):
- Position: 6 Code: point Docs: aspect.ratio
- Position: 7 Code: polygon Docs: axis.title
- Position: 8 Code: geom Docs: axis.title.x
- ```
-
-## Newly fixed
-
-* checking Rd cross-references ... NOTE
- ```
- Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’
- ```
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Packages which this enhances but not available for checking:
- 'patchwork', 'ggrastr', 'maftools'
- ```
-
-# GGally
-
-
-
-* Version: 2.2.1
-* GitHub: https://github.com/ggobi/ggally
-* Source code: https://github.com/cran/GGally
-* Date/Publication: 2024-02-14 00:53:32 UTC
-* Number of recursive dependencies: 142
-
-Run `revdepcheck::cloud_details(, "GGally")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘GGally’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/GGally/new/GGally.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘GGally’ ...
-** package ‘GGally’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in eval(exprs[i], envir) : object 'is.rel' not found
-Error: unable to load R code in package ‘GGally’
-Execution halted
-ERROR: lazy loading failed for package ‘GGally’
-* removing ‘/tmp/workdir/GGally/new/GGally.Rcheck/GGally’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘GGally’ ...
-** package ‘GGally’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (GGally)
-
-
-```
-# ggblend
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/mjskay/ggblend
-* Source code: https://github.com/cran/ggblend
-* Date/Publication: 2023-05-22 08:30:05 UTC
-* Number of recursive dependencies: 59
-
-Run `revdepcheck::cloud_details(, "ggblend")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ggblend)
- >
- > test_check("ggblend")
- [ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ]
-
- ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
- ...
- `actual$mapping` is an S3 object of class , a list
- `expected$mapping` is an S7 object of class
- Backtrace:
- ▆
- 1. └─ggblend:::expect_equal_layer(...) at test-operation-adjust.R:19:3
- 2. └─testthat::expect_equal(...) at tests/testthat/helper-layer.R:26:3
-
- [ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ]
- Error: Test failures
- Execution halted
- ```
-
-# ggborderline
-
-
-
-* Version: 0.2.0
-* GitHub: https://github.com/wurli/ggborderline
-* Source code: https://github.com/cran/ggborderline
-* Date/Publication: 2022-10-25 13:45:14 UTC
-* Number of recursive dependencies: 42
-
-Run `revdepcheck::cloud_details(, "ggborderline")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggborderline-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: geom_borderpath
- > ### Title: Connect observations
- > ### Aliases: geom_borderpath geom_borderline geom_borderstep
- >
- > ### ** Examples
- >
- > require(ggplot2)
- ...
- 5. └─ggplot2::build_ggplot(plot)
- 6. ├─S7::S7_dispatch()
- 7. └─ggplot2 (local) `method(build_ggplot, ggplot2::ggplot)`(...)
- 8. └─npscales$set_palettes(plot@theme)
- 9. └─ggplot2 (local) set_palettes(..., self = self)
- 10. ├─scales::as_discrete_pal(elem)
- 11. └─scales:::as_discrete_pal.default(elem)
- 12. └─cli::cli_abort("Cannot convert {.arg x} to a discrete palette.")
- 13. └─rlang::abort(...)
- Execution halted
- ```
-
-# ggbrain
-
-
-
-* Version: 0.9.0
-* GitHub: https://github.com/michaelhallquist/ggbrain
-* Source code: https://github.com/cran/ggbrain
-* Date/Publication: 2025-03-20 01:30:02 UTC
-* Number of recursive dependencies: 71
-
-Run `revdepcheck::cloud_details(, "ggbrain")` for more info
-
-
-
-## Newly broken
-
-* checking S3 generic/method consistency ... WARNING
- ```
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.ggbrain_panel:
- function(object, plot, object_name)
-
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.ggbrain_label:
- function(object, plot, object_name)
-
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.ggbrain_layer:
- function(object, plot, object_name)
- See section ‘Generic functions and methods’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 10.1Mb
- sub-directories of 1Mb or more:
- doc 1.6Mb
- extdata 2.2Mb
- libs 5.5Mb
- ```
-
-# ggbreak
-
-
-
-* Version: 0.1.4
-* GitHub: https://github.com/YuLab-SMU/ggbreak
-* Source code: https://github.com/cran/ggbreak
-* Date/Publication: 2025-02-04 17:50:10 UTC
-* Number of recursive dependencies: 61
-
-Run `revdepcheck::cloud_details(, "ggbreak")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘ggbreak.Rmd’ using rmarkdown
-
- Quitting from ggbreak.Rmd:61-78 [unnamed-chunk-2]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error in `UseMethod()`:
- ! no applicable method for 'as.grob' applied to an object of class "c('LayerInstance', 'Layer', 'ggproto', 'gg')"
- ---
- Backtrace:
- ...
-
- Error: processing vignette 'ggbreak.Rmd' failed with diagnostics:
- no applicable method for 'as.grob' applied to an object of class "c('LayerInstance', 'Layer', 'ggproto', 'gg')"
- --- failed re-building ‘ggbreak.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘ggbreak.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-* checking S3 generic/method consistency ... WARNING
- ```
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.wrap_params:
- function(object, plot, object_name)
-
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.ggcut_params:
- function(object, plot, object_name)
-
- ...
- function(object, plot, ...)
- ggplot_add.ggbreak:
- function(object, plot, object_name)
-
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.gg:
- function(object, plot, object_name)
- See section ‘Generic functions and methods’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-# ggbump
-
-
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/ggbump
-* Date/Publication: 2020-04-24 16:00:02 UTC
-* Number of recursive dependencies: 50
-
-Run `revdepcheck::cloud_details(, "ggbump")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ggbump)
- >
- > test_check("ggbump")
- [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ...
- ── Failure ('test-numeric_inputs.R:21:3'): multiplication works ────────────────
- ... %>% class() not equal to c("gg", "ggplot").
- Lengths differ: 5 is not 2
- ── Failure ('test-numeric_inputs.R:26:3'): multiplication works ────────────────
- ... %>% class() not equal to c("gg", "ggplot").
- Lengths differ: 5 is not 2
-
- [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# ggdark
-
-
-
-* Version: 0.2.1
-* GitHub: NA
-* Source code: https://github.com/cran/ggdark
-* Date/Publication: 2019-01-11 17:30:06 UTC
-* Number of recursive dependencies: 42
-
-Run `revdepcheck::cloud_details(, "ggdark")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggdark-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: dark_mode
- > ### Title: Activate dark mode on a 'ggplot2' theme
- > ### Aliases: dark_mode
- >
- > ### ** Examples
- >
- > library(ggplot2)
- ...
- >
- > p1 <- ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Species)) +
- + geom_point()
- >
- > p1 # theme returned by theme_get()
- > p1 + dark_mode() # activate dark mode on theme returned by theme_get()
- Error in match(x, table, nomatch = 0L) :
- 'match' requires vector arguments
- Calls: dark_mode -> %in%
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ggdark)
- >
- > test_check("ggdark")
- [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ...
- ── Error ('test_dark_mode.R:10:1'): (code run outside of `test_that()`) ────────
- Error in `match(x, table, nomatch = 0L)`: 'match' requires vector arguments
- Backtrace:
- ▆
- 1. └─ggdark::dark_mode(light_theme) at test_dark_mode.R:10:1
- 2. └─geoms[["GeomPoint"]]$default_aes$colour %in% ...
-
- [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# ggdemetra
-
-
-
-* Version: 0.2.8
-* GitHub: https://github.com/AQLT/ggdemetra
-* Source code: https://github.com/cran/ggdemetra
-* Date/Publication: 2024-02-04 14:50:02 UTC
-* Number of recursive dependencies: 51
-
-Run `revdepcheck::cloud_details(, "ggdemetra")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘ggdemetra’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: `aes_()` was deprecated in ggplot2 3.0.0.
- See ‘/tmp/workdir/ggdemetra/new/ggdemetra.Rcheck/00install.out’ for details.
- ```
-
-# ggDoubleHeat
-
-
-
-* Version: 0.1.2
-* GitHub: https://github.com/PursuitOfDataScience/ggDoubleHeat
-* Source code: https://github.com/cran/ggDoubleHeat
-* Date/Publication: 2023-08-24 21:00:04 UTC
-* Number of recursive dependencies: 55
-
-Run `revdepcheck::cloud_details(, "ggDoubleHeat")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggDoubleHeat-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: geom_heat_circle
- > ### Title: Heatcircle
- > ### Aliases: geom_heat_circle
- >
- > ### ** Examples
- >
- >
- ...
- + y = rep(c("d", "e", "f"), 3),
- + outside_values = rep(c(1,5,7),3),
- + inside_values = rep(c(2,3,4),3))
- >
- > ggplot(data, aes(x,y)) +
- + geom_heat_circle(outside = outside_values,
- + inside = inside_values)
- Error in scale_title(title) : object 'outside_values' not found
- Calls: ... extract_params -> -> make_title -> scale_title
- Execution halted
- ```
-
-# ggEDA
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/CCICB/ggEDA
-* Source code: https://github.com/cran/ggEDA
-* Date/Publication: 2025-05-07 12:00:02 UTC
-* Number of recursive dependencies: 92
-
-Run `revdepcheck::cloud_details(, "ggEDA")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggEDA-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: ggstack
- > ### Title: AutoPlot an entire data.frame
- > ### Aliases: ggstack
- >
- > ### ** Examples
- >
- >
- ...
- 31. │ └─base::lapply(...)
- 32. │ └─ggplot2 (local) FUN(X[[i]], ...)
- 33. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
- 34. │ └─self$draw_panel(...)
- 35. └─base::.handleSimpleError(...)
- 36. └─rlang (local) h(simpleError(msg, call))
- 37. └─handlers[[1L]](cnd)
- 38. └─cli::cli_abort(...)
- 39. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/tests.html
- > # * https://testthat.r-lib.org/reference/test_package.html#special-files
- ...
- Expected `ggstack(...)` to run without any errors.
- i Actually got a with text:
- Problem while converting geom to grob.
- i Error occurred in the 1st layer.
- Caused by error in `draw_panel()`:
- ! unused arguments (lineend = "butt", linejoin = "mitre")
-
- [ FAIL 11 | WARN 12 | SKIP 2 | PASS 114 ]
- Error: Test failures
- Execution halted
- ```
-
-# ggedit
-
-
-
-* Version: 0.4.1
-* GitHub: https://github.com/yonicd/ggedit
-* Source code: https://github.com/cran/ggedit
-* Date/Publication: 2024-03-04 14:40:02 UTC
-* Number of recursive dependencies: 91
-
-Run `revdepcheck::cloud_details(, "ggedit")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggedit-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: compare
- > ### Title: compare
- > ### Aliases: compare
- >
- > ### ** Examples
- >
- > compare(ggplot2::theme_bw(),ggplot2::theme_get())
- Error in as.vector(x, "list") :
- cannot coerce type 'object' to vector of type 'list'
- Calls: compare ... themeFetchFull -> lapply -> as.list -> as.list.default
- Execution halted
- ```
-
-# ggfixest
-
-
-
-* Version: 0.3.0
-* GitHub: https://github.com/grantmcdermott/ggfixest
-* Source code: https://github.com/cran/ggfixest
-* Date/Publication: 2025-05-14 02:20:02 UTC
-* Number of recursive dependencies: 77
-
-Run `revdepcheck::cloud_details(, "ggfixest")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘tinytest.R’
- Running the tests in ‘tests/tinytest.R’ failed.
- Complete output:
- > ## Throttle CPU threads if R CMD check (for CRAN)
- >
- > if (any(grepl("_R_CHECK", names(Sys.getenv()), fixed = TRUE))) {
- + # fixest
- + if (requireNamespace("fixest", quietly = TRUE)) {
- + library(fixest)
- + setFixest_nthreads(1)
- ...
- call| expect_snapshot_plot(p19a, label = "ggiplot_multi_complex_kitchen_iid")
- diff| 1774
- info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png
- ----- FAILED[]: test_ggiplot.R<193--193>
- call| expect_snapshot_plot(p19b, label = "ggiplot_multi_complex_kitchen_iid")
- diff| 1774
- info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png
- Error: 5 out of 111 tests failed
- In addition: There were 11 warnings (use warnings() to see them)
- Execution halted
- ```
-
-# ggfocus
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/Freguglia/ggfocus
-* Source code: https://github.com/cran/ggfocus
-* Date/Publication: 2020-01-23 13:20:02 UTC
-* Number of recursive dependencies: 52
-
-Run `revdepcheck::cloud_details(, "ggfocus")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggfocus-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: ggfocus
- > ### Title: (Deprecated) Sets focus scales to an existing 'ggplot' object
- > ### Aliases: ggfocus
- >
- > ### ** Examples
- >
- > library(ggplot2)
- ...
- > p <- ggplot(iris,aes(x=Sepal.Length,y=Petal.Length)) + geom_point()
- > ggfocus(p, Species, "versicolor")
- The function 'ggfocus()' is deprecated, consider using the family scale_*_focus() instead.
- Warning: `select_()` was deprecated in dplyr 0.7.0.
- ℹ Please use `select()` instead.
- ℹ The deprecated feature was likely used in the ggfocus package.
- Please report the issue at .
- Error in scale_title(title) : object 'Species' not found
- Calls: ... extract_params -> -> make_title -> scale_title
- Execution halted
- ```
-
-* checking S3 generic/method consistency ... WARNING
- ```
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.ggfocus_fill:
- function(object, plot, object_name)
-
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.ggfocus_shape:
- function(object, plot, object_name)
-
- ...
- function(object, plot, ...)
- ggplot_add.ggfocus_size:
- function(object, plot, object_name)
-
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.ggfocus_linetype:
- function(object, plot, object_name)
- See section ‘Generic functions and methods’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# ggformula
-
-
-
-* Version: 0.12.0
-* GitHub: https://github.com/ProjectMOSAIC/ggformula
-* Source code: https://github.com/cran/ggformula
-* Date/Publication: 2023-11-09 12:30:07 UTC
-* Number of recursive dependencies: 119
-
-Run `revdepcheck::cloud_details(, "ggformula")` for more info
-
-
-
-## Newly broken
-
-* checking for code/documentation mismatches ... WARNING
- ```
- Codoc mismatches from Rd file 'gf_lines.Rd':
- gf_hline
- Code: function(object = NULL, gformula = NULL, data = NULL, ...,
- yintercept, color, linetype, linewidth, alpha, xlab,
- ylab, title, subtitle, caption, position = "identity",
- show.legend = NA, show.help = NULL, inherit = FALSE,
- environment = parent.frame())
- Docs: function(object = NULL, gformula = NULL, data = NULL, ...,
- yintercept, color, linetype, linewidth, alpha, xlab,
- ylab, title, subtitle, caption, show.legend = NA,
- ...
- xintercept, color, linetype, linewidth, alpha, xlab,
- ylab, title, subtitle, caption, show.legend = NA,
- show.help = NULL, inherit = FALSE, environment =
- parent.frame())
- Argument names in code not in docs:
- position
- Mismatches in argument names (first 3):
- Position: 15 Code: position Docs: show.legend
- Position: 16 Code: show.legend Docs: show.help
- Position: 17 Code: show.help Docs: inherit
- ```
-
-## In both
-
-* checking Rd cross-references ... NOTE
- ```
- Packages unavailable to check Rd xrefs: ‘akima’, ‘ggforce’
- ```
-
-# ggfortify
-
-
-
-* Version: 0.4.17
-* GitHub: https://github.com/sinhrks/ggfortify
-* Source code: https://github.com/cran/ggfortify
-* Date/Publication: 2024-04-17 04:30:04 UTC
-* Number of recursive dependencies: 121
-
-Run `revdepcheck::cloud_details(, "ggfortify")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘test-all.R’
- Running the tests in ‘tests/test-all.R’ failed.
- Complete output:
- > library(testthat)
- >
- > suppressWarnings(RNGversion("3.5.0"))
- > set.seed(1, sample.kind = "Rejection")
- >
- > test_check('ggfortify')
- Loading required package: ggfortify
- ...
-
- x[3]: "#595959FF"
- y[3]: "grey35"
-
- x[4]: "#595959FF"
- y[4]: "grey35"
-
- [ FAIL 5 | WARN 13 | SKIP 48 | PASS 734 ]
- Error: Test failures
- Execution halted
- ```
-
-# ggfx
-
-
-
-* Version: 1.0.1
-* GitHub: https://github.com/thomasp85/ggfx
-* Source code: https://github.com/cran/ggfx
-* Date/Publication: 2022-08-22 08:00:06 UTC
-* Number of recursive dependencies: 62
-
-Run `revdepcheck::cloud_details(, "ggfx")` for more info
-
-
-
-## Newly broken
-
-* checking S3 generic/method consistency ... WARNING
- ```
- ggplot_build:
- function(plot, ...)
- ggplot_build.filtered_ggplot:
- function(plot)
- See section ‘Generic functions and methods’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-## In both
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) render_context.Rd:42: Lost braces; missing escapes or markup?
- 42 | \item{xmin, ymin, xmax, ymax}{Boundaries of the area in pixels. {0,0} is the
- | ^
- ```
-
-# gggenomes
-
-
-
-* Version: 1.0.1
-* GitHub: https://github.com/thackl/gggenomes
-* Source code: https://github.com/cran/gggenomes
-* Date/Publication: 2024-08-30 11:40:02 UTC
-* Number of recursive dependencies: 109
-
-Run `revdepcheck::cloud_details(, "gggenomes")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘gggenomes-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: add_feats
- > ### Title: Add different types of tracks
- > ### Aliases: add_feats add_links add_subfeats add_sublinks add_clusters
- > ### add_tracks
- >
- > ### ** Examples
- >
- ...
- + add_feats(repeats = emale_tirs) +
- + geom_seq() + geom_feat()
- Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
- ℹ Please use the `linewidth` argument instead.
- ℹ The deprecated feature was likely used in the gggenomes package.
- Please report the issue at .
- Error in UseMethod("add_feats") :
- no applicable method for 'add_feats' applied to an object of class "NULL"
- Calls: %>% -> add_feats
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘emales.Rmd’ using rmarkdown
- --- finished re-building ‘emales.Rmd’
-
- --- re-building ‘flip.Rmd’ using rmarkdown
-
- Quitting from flip.Rmd:16-44 [unnamed-chunk-2]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error in `UseMethod()`:
- ...
-
- Error: processing vignette 'gggenomes.Rmd' failed with diagnostics:
- no applicable method for 'track_info' applied to an object of class "NULL"
- --- failed re-building ‘gggenomes.Rmd’
-
- SUMMARY: processing the following files failed:
- ‘flip.Rmd’ ‘gggenomes.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# ggghost
-
-
-
-* Version: 0.2.2
-* GitHub: https://github.com/jonocarroll/ggghost
-* Source code: https://github.com/cran/ggghost
-* Date/Publication: 2025-04-15 05:50:07 UTC
-* Number of recursive dependencies: 46
-
-Run `revdepcheck::cloud_details(, "ggghost")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggghost-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: -.gg
- > ### Title: Remove a call from a ggghost object
- > ### Aliases: -.gg
- >
- > ### ** Examples
- >
- > ## create a ggghost object
- ...
- > ## remove the geom_smooth
- > z - geom_smooth()
- >
- > ## remove the labels
- > ## NOTE: argument must be present and able to be
- > ## evaluated in scope
- > z - labs(TRUE) # works
- Error: object is invalid:
- - every label must be named.
- Execution halted
- ```
-
-# gghalves
-
-
-
-* Version: 0.1.4
-* GitHub: https://github.com/erocoar/gghalves
-* Source code: https://github.com/cran/gghalves
-* Date/Publication: 2022-11-20 11:40:02 UTC
-* Number of recursive dependencies: 49
-
-Run `revdepcheck::cloud_details(, "gghalves")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘gghalves-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: geom_half_point
- > ### Title: Points with jitter for half geoms.
- > ### Aliases: geom_half_point
- >
- > ### ** Examples
- >
- > ggplot(iris, aes(x = Species, y = Petal.Width, fill = Species)) +
- ...
- 32. │ └─base::lapply(...)
- 33. │ └─ggplot2 (local) FUN(X[[i]], ...)
- 34. │ └─ggplot2 (local) apply_fun(cur_data)
- 35. │ └─ggplot2 (local) fun(x, ...)
- 36. └─base::.handleSimpleError(...)
- 37. └─rlang (local) h(simpleError(msg, call))
- 38. └─handlers[[1L]](cnd)
- 39. └─cli::cli_abort(...)
- 40. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘gghalves.Rmd’ using rmarkdown
-
- Quitting from gghalves.Rmd:39-42 [unnamed-chunk-2]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- NULL
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error: processing vignette 'gghalves.Rmd' failed with diagnostics:
- ...
- ℹ Error occurred in the 1st layer.
- Caused by error in `fun()`:
- ! argument "layout" is missing, with no default
- --- failed re-building ‘gghalves.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘gghalves.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘grDevices’ ‘gtable’
- All declared Imports should be used.
- ```
-
-# ggimage
-
-
-
-* Version: 0.3.3
-* GitHub: https://github.com/GuangchuangYu/ggimage
-* Source code: https://github.com/cran/ggimage
-* Date/Publication: 2023-06-19 04:10:02 UTC
-* Number of recursive dependencies: 56
-
-Run `revdepcheck::cloud_details(, "ggimage")` for more info
-
-
-
-## Newly broken
-
-* checking S3 generic/method consistency ... WARNING
- ```
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.bgimage:
- function(object, plot, object_name)
- See section ‘Generic functions and methods’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-# ggiraph
-
-
-
-* Version: 0.8.13
-* GitHub: https://github.com/davidgohel/ggiraph
-* Source code: https://github.com/cran/ggiraph
-* Date/Publication: 2025-03-28 10:20:02 UTC
-* Number of recursive dependencies: 86
-
-Run `revdepcheck::cloud_details(, "ggiraph")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggiraph-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: geom_bar_interactive
- > ### Title: Create interactive bars
- > ### Aliases: geom_bar_interactive geom_col_interactive
- >
- > ### ** Examples
- >
- > # add interactive bar -------
- ...
- 23. │ └─base::lapply(...)
- 24. │ └─ggplot2 (local) FUN(X[[i]], ...)
- 25. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
- 26. │ └─self$draw_panel(...)
- 27. └─base::.handleSimpleError(...)
- 28. └─rlang (local) h(simpleError(msg, call))
- 29. └─handlers[[1L]](cnd)
- 30. └─cli::cli_abort(...)
- 31. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘tinytest.R’
- Running the tests in ‘tests/tinytest.R’ failed.
- Complete output:
- > if (requireNamespace("tinytest", quietly = TRUE)) {
- + tinytest::test_package("ggiraph")
- + }
-
- test-annotate_interactive.R... 0 tests
- test-annotate_interactive.R... 0 tests
- test-annotate_interactive.R... 0 tests
- ...
- 33. │ └─base::lapply(...)
- 34. │ └─ggplot2 (local) FUN(X[[i]], ...)
- 35. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
- 36. │ └─self$draw_panel(...)
- 37. └─base::.handleSimpleError(...)
- 38. └─rlang (local) h(simpleError(msg, call))
- 39. └─handlers[[1L]](cnd)
- 40. └─cli::cli_abort(...)
- 41. └─rlang::abort(...)
- Execution halted
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 8.1Mb
- sub-directories of 1Mb or more:
- R 1.5Mb
- libs 5.2Mb
- ```
-
-# ggiraphExtra
-
-
-
-* Version: 0.3.0
-* GitHub: https://github.com/cardiomoon/ggiraphExtra
-* Source code: https://github.com/cran/ggiraphExtra
-* Date/Publication: 2020-10-06 07:00:02 UTC
-* Number of recursive dependencies: 106
-
-Run `revdepcheck::cloud_details(, "ggiraphExtra")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggiraphExtra-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: ggBar
- > ### Title: Draw an interactive barplot
- > ### Aliases: ggBar
- >
- > ### ** Examples
- >
- > require(moonBook)
- ...
- 24. │ └─base::lapply(...)
- 25. │ └─ggplot2 (local) FUN(X[[i]], ...)
- 26. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
- 27. │ └─self$draw_panel(...)
- 28. └─base::.handleSimpleError(...)
- 29. └─rlang (local) h(simpleError(msg, call))
- 30. └─handlers[[1L]](cnd)
- 31. └─cli::cli_abort(...)
- 32. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘ggPredict.Rmd’ using rmarkdown
- ```
-
-# ggmap
-
-
-
-* Version: 4.0.1
-* GitHub: https://github.com/dkahle/ggmap
-* Source code: https://github.com/cran/ggmap
-* Date/Publication: 2025-04-07 19:40:02 UTC
-* Number of recursive dependencies: 62
-
-Run `revdepcheck::cloud_details(, "ggmap")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘ggmap’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: `aes_()` was deprecated in ggplot2 3.0.0.
- See ‘/tmp/workdir/ggmap/new/ggmap.Rcheck/00install.out’ for details.
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 7.4Mb
- sub-directories of 1Mb or more:
- data 7.0Mb
- ```
-
-# ggmosaic
-
-
-
-* Version: 0.3.3
-* GitHub: https://github.com/haleyjeppson/ggmosaic
-* Source code: https://github.com/cran/ggmosaic
-* Date/Publication: 2021-02-23 19:50:02 UTC
-* Number of recursive dependencies: 73
-
-Run `revdepcheck::cloud_details(, "ggmosaic")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘ggmosaic’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details.
- ```
-
-## Newly fixed
-
-* checking dependencies in R code ... NOTE
- ```
- ':::' call which should be '::': ‘scales:::censor’
- See the note in ?`:::` about the use of this operator.
- Unexported object imported by a ':::' call: ‘productplots:::bound’
- See the note in ?`:::` about the use of this operator.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ggmosaic’ ...
-** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'is.waive' not found
-Error: unable to load R code in package ‘ggmosaic’
-Execution halted
-ERROR: lazy loading failed for package ‘ggmosaic’
-* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ggmosaic’ ...
-** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (ggmosaic)
-
-
-```
-# ggmulti
-
-
-
-* Version: 1.0.7
-* GitHub: NA
-* Source code: https://github.com/cran/ggmulti
-* Date/Publication: 2024-04-09 09:40:05 UTC
-* Number of recursive dependencies: 123
-
-Run `revdepcheck::cloud_details(, "ggmulti")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘ggmulti’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ggmulti’ ...
-** package ‘ggmulti’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'new_aes' not found
-Error: unable to load R code in package ‘ggmulti’
-Execution halted
-ERROR: lazy loading failed for package ‘ggmulti’
-* removing ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/ggmulti’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ggmulti’ ...
-** package ‘ggmulti’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (ggmulti)
-
-
-```
-# ggpackets
-
-
-
-* Version: 0.2.1
-* GitHub: https://github.com/dgkf/ggpackets
-* Source code: https://github.com/cran/ggpackets
-* Date/Publication: 2022-10-10 23:30:02 UTC
-* Number of recursive dependencies: 72
-
-Run `revdepcheck::cloud_details(, "ggpackets")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggpackets-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: ggpacket
- > ### Title: A container for lazy ggplot layers
- > ### Aliases: ggpacket
- >
- > ### ** Examples
- >
- > library(ggplot2)
- ...
- + geom_line(...) %+%
- + geom_point(color = "red", ...)
- + }
- >
- > ggplot(mtcars, aes(x = wt, y = mpg)) +
- + ggpk_func(color = "purple", size = 2, point.size = 4)
- Error in if (grepl("^Ignoring unknown (parameters|aesthetics):", w$message)) invokeRestart("muffleWarning") :
- the condition has length > 1
- Calls: Ops.S7_object ... withOneRestart -> doWithOneRestart -> signalCondition ->
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘composing-functions.Rmd’ using rmarkdown
- ```
-
-* checking S3 generic/method consistency ... WARNING
- ```
- ggplot_add:
- function(object, plot, ...)
- ggplot_add.ggpacket:
- function(object, plot, object_name)
- See section ‘Generic functions and methods’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-# ggparallel
-
-
-
-* Version: 0.4.0
-* GitHub: https://github.com/heike/ggparallel
-* Source code: https://github.com/cran/ggparallel
-* Date/Publication: 2024-03-09 22:00:02 UTC
-* Number of recursive dependencies: 47
-
-Run `revdepcheck::cloud_details(, "ggparallel")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > # This file is part of the standard setup for testthat.
- > # It is recommended that you do not modify it.
- > #
- > # Where should you do additional test configuration?
- > # Learn more about the roles of various files in:
- > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
- > # * https://testthat.r-lib.org/articles/special-files.html
- ...
- ▆
- 1. ├─ggplot2::ggplot_build(test_mtcars_plot) at test-ggparallel.R:12:3
- 2. ├─ggplot2:::ggplot_build.default(test_mtcars_plot)
- 3. │ └─ggplot2::build_ggplot(plot)
- 4. │ └─S7::S7_dispatch()
- 5. └─S7:::method_lookup_error("build_ggplot", ``)
-
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
- Error: Test failures
- Execution halted
- ```
-
-# ggpath
-
-
-
-* Version: 1.0.2
-* GitHub: https://github.com/mrcaseb/ggpath
-* Source code: https://github.com/cran/ggpath
-* Date/Publication: 2024-08-20 09:30:02 UTC
-* Number of recursive dependencies: 64
-
-Run `revdepcheck::cloud_details(, "ggpath")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ggpath)
- >
- > test_check("ggpath")
- [ FAIL 1 | WARN 0 | SKIP 5 | PASS 3 ]
-
- ══ Skipped tests (5) ═══════════════════════════════════════════════════════════
- ...
- • geom_lines/p1.svg
- • geom_lines/p2.svg
- • geom_lines/p3.svg
- • geom_lines/p4.svg
- • geom_lines/p5.svg
- • theme-elements/p1.svg
- • theme-elements/p2.svg
- • theme-elements/p3.svg
- Error: Test failures
- Execution halted
- ```
-
-# ggplot2.utils
-
-
-
-* Version: 0.3.2
-* GitHub: https://github.com/insightsengineering/ggplot2.utils
-* Source code: https://github.com/cran/ggplot2.utils
-* Date/Publication: 2024-06-25 21:10:02 UTC
-* Number of recursive dependencies: 70
-
-Run `revdepcheck::cloud_details(, "ggplot2.utils")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ggplot2.utils)
- Loading required package: ggplot2
- >
- > test_check("ggplot2.utils")
-
- Attaching package: 'dplyr'
- ...
- ── Failure ('test-geom_km_ticks.R:10:3'): geom_km_ticks works as expected ──────
- Names of `first_layer` ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill'
- ── Failure ('test-stat_km.R:10:3'): stat_km works as expected ──────────────────
- Names of `first_layer` ('time', 'survival', 'PANEL', 'group', 'x', 'y', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha') don't match 'x', 'y', 'time', 'survival', 'PANEL', 'group', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha'
- ── Failure ('test-stat_km_ticks.R:10:3'): stat_km_ticks works as expected ──────
- Names of `first_layer` ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill'
-
- [ FAIL 4 | WARN 0 | SKIP 7 | PASS 44 ]
- Error: Test failures
- Execution halted
- ```
-
-# ggPMX
-
-
-
-* Version: 1.2.11
-* GitHub: https://github.com/ggPMXdevelopment/ggPMX
-* Source code: https://github.com/cran/ggPMX
-* Date/Publication: 2023-11-30 16:10:06 UTC
-* Number of recursive dependencies: 173
-
-Run `revdepcheck::cloud_details(, "ggPMX")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘ggPMX-guide.Rmd’ using rmarkdown
-
- Quitting from ggPMX-guide.Rmd:24-37 [load_package]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error in `+.gg`:
- ! 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
- ---
- Backtrace:
- ...
-
- Error: processing vignette 'ggPMX-guide.Rmd' failed with diagnostics:
- 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
- --- failed re-building ‘ggPMX-guide.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘ggPMX-guide.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘lixoftConnectors’
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 9.0Mb
- sub-directories of 1Mb or more:
- doc 1.1Mb
- help 2.4Mb
- testdata 4.8Mb
- ```
-
-# ggpol
-
-
-
-* Version: 0.0.7
-* GitHub: https://github.com/erocoar/ggpol
-* Source code: https://github.com/cran/ggpol
-* Date/Publication: 2020-11-08 13:40:02 UTC
-* Number of recursive dependencies: 51
-
-Run `revdepcheck::cloud_details(, "ggpol")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggpol-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: GeomConfmat
- > ### Title: Confusion Matrix
- > ### Aliases: GeomConfmat geom_confmat stat_confmat
- >
- > ### ** Examples
- >
- > x <- sample(LETTERS[seq(4)], 50, replace = TRUE)
- ...
- 24. │ └─ggpol (local) draw_panel(...)
- 25. │ └─base::lapply(GeomText$default_aes[missing_aes], rlang::eval_tidy)
- 26. │ └─rlang (local) FUN(X[[i]], ...)
- 27. ├─ggplot2::from_theme(fontsize)
- 28. └─base::.handleSimpleError(...)
- 29. └─rlang (local) h(simpleError(msg, call))
- 30. └─handlers[[1L]](cnd)
- 31. └─cli::cli_abort(...)
- 32. └─rlang::abort(...)
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘dplyr’ ‘grDevices’
- All declared Imports should be used.
- ```
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# ggprism
-
-
-
-* Version: 1.0.6
-* GitHub: https://github.com/csdaw/ggprism
-* Source code: https://github.com/cran/ggprism
-* Date/Publication: 2025-05-17 10:50:02 UTC
-* Number of recursive dependencies: 98
-
-Run `revdepcheck::cloud_details(, "ggprism")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggprism-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: annotation_ticks
- > ### Title: Add ticks as ggplot annotation
- > ### Aliases: annotation_ticks
- >
- > ### ** Examples
- >
- > ## Generally it is better to use the guide_prism_minor function.
- ...
- Please report the issue at .
- Error in `parent %+replace% t`:
- ! `%+replace%` requires two theme objects
- Backtrace:
- ▆
- 1. └─ggprism::theme_prism(border = TRUE)
- 2. └─parent %+replace% t
- 3. └─cli::cli_abort("{.code %+replace%} requires two theme objects")
- 4. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘tinytest.R’
- Running the tests in ‘tests/tinytest.R’ failed.
- Complete output:
- >
- > if ( requireNamespace("tinytest", quietly=TRUE) ){
- + tinytest::test_package("ggprism")
- + }
-
- test-add_pvalue.R............. 0 tests
- test-add_pvalue.R............. 0 tests
- ...
- ℹ It has been replaced by a ggproto system that can be extended.
- 3: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
- ℹ Please use the `linewidth` argument instead.
- ℹ The deprecated feature was likely used in the ggprism package.
- Please report the issue at .
- 4: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0.
- ℹ Please use the `linewidth` argument instead.
- ℹ The deprecated feature was likely used in the ggprism package.
- Please report the issue at .
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘axes.Rmd’ using rmarkdown
-
- Quitting from axes.Rmd:37-48 [unnamed-chunk-2]
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- NULL
- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- Error: processing vignette 'axes.Rmd' failed with diagnostics:
- `%+replace%` requires two theme objects
- ...
-
- Error: processing vignette 'themes.Rmd' failed with diagnostics:
- `%+replace%` requires two theme objects
- --- failed re-building ‘themes.Rmd’
-
- SUMMARY: processing the following files failed:
- ‘axes.Rmd’ ‘colours.Rmd’ ‘ggprism.Rmd’ ‘pvalues.Rmd’ ‘themes.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# ggpubr
-
-
-
-* Version: 0.6.0
-* GitHub: https://github.com/kassambara/ggpubr
-* Source code: https://github.com/cran/ggpubr
-* Date/Publication: 2023-02-10 16:20:02 UTC
-* Number of recursive dependencies: 88
-
-Run `revdepcheck::cloud_details(, "ggpubr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(ggpubr)
- Loading required package: ggplot2
- >
- > test_check("ggpubr")
- [ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ]
-
- ...
- [6] 6 - 10 == -4
- [7] 19 - 9 == 10
- [9] 1 - 7 == -6
- [10] 6 - 7 == -1
- [11] 13 - 6 == 7
- ...
-
- [ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ]
- Error: Test failures
- Execution halted
- ```
-
-# ggraph
-
-
-
-* Version: 2.2.1
-* GitHub: https://github.com/thomasp85/ggraph
-* Source code: https://github.com/cran/ggraph
-* Date/Publication: 2024-03-07 12:40:02 UTC
-* Number of recursive dependencies: 112
-
-Run `revdepcheck::cloud_details(, "ggraph")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ggraph-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: geom_conn_bundle
- > ### Title: Create hierarchical edge bundles between node connections
- > ### Aliases: geom_conn_bundle geom_conn_bundle2 geom_conn_bundle0
- >
- > ### ** Examples
- >
- > # Create a graph of the flare class system
- ...
- + ) +
- + geom_node_point(aes(filter = leaf, colour = class)) +
- + scale_edge_colour_distiller('', direction = 1, guide = 'edge_direction') +
- + coord_fixed() +
- + ggforce::theme_no_axes()
- Error in get_layer_key(...) :
- unused argument (list(