Setup

Platform

setting	value
version	R version 3.3.1 (2016-06-21)
system	x86_64, darwin13.4.0
ui	X11
language	(EN)
collate	en_US.UTF-8
tz	America/Mexico_City
date	2016-11-07

Packages

package	*	version	date	source
covr		2.2.1	2016-08-10	cran (@2.2.1)
digest		0.6.10	2016-08-02	cran (@0.6.10)
ggplot2		2.1.0	2016-03-01	cran (@2.1.0)
ggplot2movies		0.0.1	2015-08-25	cran (@0.0.1)
gtable		0.2.0	2016-02-26	cran (@0.2.0)
hexbin		1.27.1	2015-08-19	cran (@1.27.1)
Hmisc		4.0-0	2016-11-01	cran (@4.0-0)
knitr		1.14.15	2016-11-07	Github (yihui/knitr@8cbc61a)
lazyeval		0.2.0	2016-06-12	cran (@0.2.0)
mapproj		1.2-4	2015-08-03	cran (@1.2-4)
maps		3.1.1	2016-07-27	cran (@3.1.1)
maptools		0.8-39	2016-01-30	cran (@0.8-39)
multcomp		1.4-6	2016-07-14	cran (@1.4-6)
plyr		1.8.4	2016-06-08	cran (@1.8.4)
quantreg		5.29	2016-09-04	cran (@5.29)
reshape2		1.4.2	2016-10-22	cran (@1.4.2)
rmarkdown		1.1	2016-10-16	cran (@1.1)
scales		0.4.0.9003	2016-10-25	Github (hadley/scales@d58d83a)
svglite		1.2.0	2016-11-04	cran (@1.2.0)
testthat	*	1.0.2	2016-04-23	cran (@1.0.2)
tibble		1.2	2016-08-26	cran (@1.2)

Check results

967 packages

package	version	errors	warnings	notes
abctools	1.0.4	0	0	0
abd	0.2-8	0	0	0
ABHgenotypeR	1.0.1	0	0	0
ACDm	1.0.4	0	0	0
ACSNMineR	0.16.8.25	0	0	0
adapr	1.0	0	0	1
AdaptGauss	1.2.4	0	0	0
adegenet	2.0.1	0	0	0
admixturegraph	1.0.1	0	0	0
advclust	0.4	0	0	0
AFM	1.2.2	0	0	0
aimPlot	1.0.0	0	0	0
alakazam	0.2.5	0	0	0
AlignStat	1.3.1	0	0	0
alm	0.4.0	0	0	2
alphahull	2.1	0	0	0
ameco	0.2.3	0	0	1
AmpliconDuo	1.1	0	0	0
AmyloGram	1.0	0	0	0
ANOM	0.4.3	0	0	0
antitrust	0.95.1	0	0	0
aop	1.0.0	1	0	0
aoristic	0.6	0	0	2
apsimr	1.2	0	0	1
archetypes	2.2-0	0	0	2
archivist	2.1	1	0	2
ARPobservation	1.1	0	0	1
ARTool	0.10.4	0	0	0
asremlPlus	2.0-12	0	0	1
asVPC	1.0.2	0	0	1
automap	1.0-14	0	0	2
BACA	1.3	1	0	0
BacArena	1.5.1	0	0	2
BACCT	1.0	1	0	0
backShift	0.1.3	1	0	0
bamdit	3.0.0	1	0	0
bayesAB	0.7.0	0	0	0
bayesbio	1.0.0	0	0	0
BBEST	0.1-6	0	0	0
bbmle	1.0.18	0	0	0
BCEA	2.2-3	1	0	1
BCellMA	0.1	0	0	0
Bclim	3.1.0	0	0	0
bcp	4.0.0	0	0	1
bcrm	0.4.6	1	0	1
bde	1.0.1	0	0	1
bdscale	2.0.0	0	0	0
bdvis	0.2.6	0	0	0
benchmark	0.3-6	0	0	4
benchmarkme	0.3.0	0	0	0
benchmarkmeData	0.3.0	0	0	0
bife	0.1	0	0	0
binom	1.1-1	0	0	3
biogas	1.4.0	0	0	0
biogram	1.3	0	1	0
Biograph	2.0.6	0	0	0
bioinactivation	1.1.3	0	0	0
biomod2	3.3-7	0	0	0
BioPET	0.2.0	1	0	0
bioplots	0.0.1	0	0	0
BioStatR	2.0.0	0	0	1
BlandAltmanLeh	0.3.1	0	1	0
blkbox	1.0	0	0	2
blockseg	0.2	0	0	0
blscrapeR	1.0.2	0	0	0
bmlm	1.2.1	0	0	1
bmmix	0.1-2	0	0	2
bodenmiller	0.1	0	0	1
bootnet	0.3	0	0	0
braidReports	0.5.3	0	0	0
brainGraph	0.72.0	1	0	0
breakpoint	1.2	0	0	0
bridgedist	0.1.0	0	0	0
brms	1.1.0	1	0	0
broman	0.64-3	0	0	0
broom	0.4.1	0	0	0
brotli	0.8	0	0	0
bsam	1.1.0	1	0	0
BTSPAS	2014.0901	1	0	1
burnr	0.1.1	0	0	0
CALF	0.1.3	0	0	0
capm	0.9.1	0	0	0
caret	6.0-72	0	0	1
caretEnsemble	2.0.0	0	0	0
cate	1.0.4	1	0	0
catenary	1.1.1	0	0	0
Causata	4.2-0	0	0	5
cda	2.0.0	0	0	0
cdom	0.1.0	0	0	0
ChainLadder	0.2.3	0	0	0
ChannelAttributionApp	1.1	0	0	1
ChaosGame	0.2	0	0	0
checkmate	1.8.2	0	0	0
choroplethr	3.5.2	0	1	0
choroplethrAdmin1	1.1.0	0	0	1
choroplethrMaps	1.0	0	0	0
chron	2.3-47	0	0	0
CINOEDV	2.0	0	0	1
cjoint	2.0.4	0	0	0
classify	1.3	1	0	0
classyfire	0.1-2	0	0	1
clhs	0.5-6	0	0	0
clifro	3.0-0	0	1	0
ClimClass	2.1.0	0	0	0
climwin	1.0.0	0	0	0
clusterfly	0.4	1	0	0
clusternomics	0.1.0	0	0	0
ClusterR	1.0.3	0	0	0
clustrd	1.0.2	1	0	0
cmaesr	1.0.2	0	0	0
cobalt	1.3.0	0	0	0
cocoreg	0.1.0	0	0	0
codingMatrices	0.2.1	0	0	0
codyn	1.1.0	0	0	0
coefplot	1.2.4	0	0	0
cofeatureR	1.0.1	0	0	0
CollapsABEL	0.10.8	1	0	0
coloc	2.3-1	0	1	2
colormap	0.1.3	0	0	0
colorplaner	0.1.3	0	0	0
CommT	0.1.1	0	0	1
complmrob	0.6.1	0	0	0
confidence	1.1-0	0	0	1
conformal	0.2	0	0	0
Conigrave	0.1.0	0	0	0
contoureR	1.0.5	0	0	0
cooccur	1.3	0	0	0
CopulaDTA	0.0.4	0	1	0
corkscrew	1.1	0	0	0
corrr	0.2.1	1	0	0
cosinor	1.1	0	0	1
CosmoPhotoz	0.1	0	0	1
countytimezones	1.0.0	0	0	0
countyweather	0.1.0	0	0	0
covmat	1.0	0	0	0
cowplot	0.7.0	0	0	0
cplm	0.7-4	0	0	0
crawl	2.0.1	0	0	0
cricketr	0.0.13	0	0	0
crmPack	0.2.0	1	0	0
Crossover	0.1-16	1	0	0
CRTgeeDR	1.2	0	0	0
csp	0.1.0	0	0	1
cutoffR	1.0	0	0	1
cvxclustr	1.1.1	0	0	2
Cyclops	1.2.2	0	0	0
cystiSim	0.1.0	0	0	0
dae	2.7-20	0	0	0
dams	0.2	0	0	0
darch	0.12.0	0	0	2
darksky	1.0.0	0	0	0
data.table	1.9.6	1	0	0
DataExplorer	0.2.6	0	0	0
dcmr	1.0	0	0	1
ddpcr	1.5	0	1	0
Deducer	0.7-9	1	0	0
DeLorean	1.2.4	0	0	0
demi	1.1.2	1	0	0
dendextend	1.3.0	0	0	2
DengueRT	1.0.1	0	0	0
DepthProc	1.0.7	0	0	0
DescribeDisplay	0.2.5	0	0	0
detzrcr	0.1.2	0	0	0
dfexplore	0.2.1	0	0	1
DFIT	1.0-2	0	0	1
dfpk	1.0	0	0	0
dggridR	0.1.11	0	0	0
diagis	0.1.0	0	0	0
DiallelAnalysisR	0.1.1	0	0	0
dielectric	0.2.3	0	0	3
diffeR	0.0-4	0	0	0
difNLR	0.1.0	0	0	0
directlabels	2015.12.16	0	0	0
disclapmix	1.6.2	0	0	0
diveRsity	1.9.89	0	0	1
DiversityOccupancy	1.0.5	1	0	0
dlstats	0.0.9	0	0	0
dMod	0.3.2	0	0	0
doBy	4.5-15	0	0	0
DoTC	0.2	0	0	0
dotwhisker	0.2.2	0	0	0
dpcR	0.3	0	0	0
dplyr	0.5.0	0	0	1
DrBats	0.1.4	0	0	0
drLumi	0.1.2	0	0	0
dslice	1.1.5	0	0	0
dsm	2.2.13	0	0	0
DstarM	0.1.0	0	0	0
DTR	1.7	0	0	0
DTRlearn	1.2	0	0	0
dtwclust	2.3.0	0	0	0
dtwSat	0.2.1	0	0	0
DVHmetrics	0.3.6	0	0	0
DynNom	3.0.1	1	0	0
dynr	0.1.7	1	0	0
dynsim	1.2.1	0	0	0
dynsurv	0.3-3	0	0	0
earlywarnings	1.0.59	0	0	2
earthtones	0.1.0	0	0	0
EasyHTMLReport	0.1.1	0	0	3
ecb	0.2	1	1	0
ecoengine	1.10.0	0	0	0
EcoGenetics	1.2.0-3	0	0	0
ecr	1.0.1	0	0	0
edarf	1.0.0	0	0	0
edeaR	0.4.4	0	0	0
edfReader	1.1.1	0	0	0
edgar	1.0.6	0	0	0
eechidna	0.1	1	0	0
EEM	1.1.1	0	0	0
eemR	0.1.4	0	0	0
eeptools	1.0.0	0	0	0
EFDR	0.1.1	0	0	1
EffectLiteR	0.4-2	0	0	0
ega	1.0.1	0	0	0
egcm	1.0.8	0	0	0
eiCompare	1.7	0	0	0
emil	2.2.6	0	0	0
emojifont	0.3.4	0	1	1
EmpiricalCalibration	1.2.0	0	0	0
emuR	0.1.9	0	0	0
enigma	0.2.0	0	0	0
enpls	5.0	0	0	0
EpiDynamics	0.3.0	0	0	0
episensr	0.7.2	0	0	0
episheet	0.2.0	0	0	0
ESGtoolkit	0.1	0	0	2
etl	0.3.3.1	0	0	0
etm	0.6-2	0	0	2
eurostat	2.2.1	0	0	0
evaluate	0.10	0	0	0
evolqg	0.2-4	0	0	0
Evomorph	0.9	0	0	0
explor	0.2.1	0	0	0
exploreR	0.1	0	0	0
exreport	0.4.1	0	0	0
ExtDist	0.6-3	0	0	1
extracat	1.7-4	0	0	0
eyelinker	0.1	0	0	0
eyetrackingR	0.1.6	0	0	0
ez	4.4-0	0	0	0
ezsim	0.5.5	0	0	2
factoextra	1.0.3	1	0	1
FAOSTAT	2.0	0	0	1
fbroc	0.4.0	0	0	0
fermicatsR	1.4	0	0	0
FField	0.1.0	0	0	2
Fgmutils	0.9.4	1	0	0
fheatmap	1.0.1	1	0	1
FinCal	0.6.3	0	0	0
findviews	0.1.2	0	0	0
fishmove	0.3-3	0	0	1
fitbitScraper	0.1.7	0	1	0
fitcoach	1.0	0	0	0
flowr	0.9.10	0	0	0
forcats	0.1.1	0	0	0
forecast	7.3	0	0	0
forestmodel	0.4.0	0	0	0
fractional	0.1.3	0	0	0
frailtySurv	1.2.2.1	0	0	0
FREddyPro	1.0	0	0	0
freqparcoord	1.0.1	0	0	0
FreqProf	0.0.1	0	0	0
freqweights	1.0.2	0	0	1
frontiles	1.2	0	0	1
fSRM	0.6.4	0	0	0
funModeling	1.4	1	0	0
funrar	1.0.1	0	0	0
futureheatwaves	1.0.1	0	0	0
fuzzyforest	1.0.2	1	0	0
fuzzyjoin	0.1.2	0	0	0
G2Sd	2.1.5	1	0	0
gapfill	0.9.3	2	0	2
gapmap	0.0.4	0	0	0
gapminder	0.2.0	0	0	0
gcerisk	16.1.3	0	0	0
gcookbook	1.0	0	0	0
GDAdata	0.93	0	0	0
GenCAT	1.0.3	1	1	3
gender	0.5.1	0	0	1
geneSLOPE	0.37.0	0	0	0
genomeplot	1.0	0	0	0
geoknife	1.4.0	0	0	0
geomnet	0.1.2.1	1	0	0
GERGM	0.10.0	0	0	0
GetHFData	1.2.0	0	0	0
GetTDData	1.2.4	0	0	0
gettingtothebottom	3.2	0	0	1
gfcanalysis	1.4	0	0	0
GGally	1.2.0	2	0	1
ggalt	0.1.1	1	0	0
ggbeeswarm	0.5.0	0	0	0
ggcorrplot	0.1.1	0	0	0
ggdendro	0.1-20	0	0	0
ggdmc	0.1.3.5	0	0	0
ggenealogy	0.2.0	0	1	0
ggExtra	0.5	1	1	0
ggfortify	0.2.0	1	0	1
ggghost	0.2.1	0	0	0
ggiraph	0.3.2	0	0	0
gglogo	0.1.2	0	0	0
ggloop	0.1.0	0	0	0
ggmap	2.6.1	0	0	0
ggmcmc	1.1	0	0	0
ggnetwork	0.5.1	2	1	0
ggparallel	0.1.2	0	0	0
ggpmisc	0.2.12	1	1	0
ggpolypath	0.1.0	0	0	0
ggpubr	0.1.0	1	0	0
ggRandomForests	2.0.1	0	0	0
ggraptR	0.1	0	0	0
ggrepel	0.6.3	0	0	0
ggROC	1.0	0	0	3
ggsci	1.5	0	0	0
ggseas	0.5.1	0	0	0
ggsn	0.3.1	0	0	0
ggspectra	0.1.10	0	0	0
ggswissmaps	0.1.1	0	0	0
ggtern	2.1.4	1	0	0
ggThemeAssist	0.1.5	0	0	0
ggthemes	3.2.0	0	0	0
githubinstall	0.1.0	0	0	0
gitter	1.1.1	1	0	0
glinternet	1.0.0	0	0	1
glycanr	0.3.0	2	0	1
gmum.r	0.2.1	0	0	0
gmwm	2.0.0	0	0	1
gogamer	0.4.3	0	0	0
googlesheets	0.2.1	0	0	0
GOplot	1.0.2	0	0	0
gpmap	0.1.1	0	0	3
granovaGG	1.4.0	0	0	0
Greg	1.2	2	1	0
greport	0.7-1	1	0	0
gridDebug	0.5-0	1	0	0
gridExtra	2.2.1	0	0	0
gridsampler	0.5	0	0	0
growcurves	0.2.4.0	0	0	0
growfunctions	0.13	0	0	0
growthcurver	0.2.1	0	0	0
gsDesign	3.0-1	0	0	1
GSE	4.0	0	0	0
gtrendsR	1.3.5	0	0	0
gunsales	0.1.1	0	0	0
gutenbergr	0.1.2	0	0	0
gwdegree	0.1.1	0	0	0
gWQS	1.0.0	0	0	0
h2o	3.10.0.8	0	0	1
hazus	0.1	0	0	1
hBayesDM	0.2.3.1	0	0	0
hdm	0.2.0	0	0	0
hdnom	4.2	1	1	0
hdr	0.1	0	0	0
heatmaply	0.6.0	1	1	0
heemod	0.5.1	0	0	0
heuristica	1.0.1	0	0	0
hierarchicalDS	2.9	0	0	1
hierarchicalSets	1.0.2	0	0	1
highcharter	0.4.0	0	0	0
HighDimOut	1.0.0	0	0	1
HistData	0.7-8	0	0	1
HistDAWass	0.1.4	0	0	0
historydata	0.1	0	0	0
HiveR	0.2.55	0	0	0
HLMdiag	0.3.1	0	0	0
Hmisc	4.0-0	1	0	0
HRM	0.3.5	0	0	0
HTSSIP	1.0.3	1	0	0
httk	1.4	0	0	0
HWxtest	1.1.7	0	0	0
hybridModels	0.2.6	0	0	0
hyfo	1.3.6	0	0	0
hyperSpec	0.98-20150304	1	1	1
IAPWS95	1.0.0	1	0	0
IAT	0.3	0	0	0
ibmdbR	1.48.0	1	0	0
icarus	0.2.2	0	0	0
icd9	1.3.1	0	0	0
idm	1.7.1	1	0	0
ie2miscdata	1.0.1	0	1	1
ifaTools	0.13	0	0	0
IGM.MEA	0.3.4	0	0	0
imageData	0.1-26	1	0	0
imager	0.31	0	1	1
IMP	1.1	0	0	0
imputeTestbench	3.0.0	0	0	0
incidence	1.0.0	0	0	0
inctools	1.0.7	0	0	0
IncucyteDRC	0.5.4	0	0	0
iNEXT	2.0.9	0	1	0
Information	0.0.9	0	0	0
InformationValue	1.2.3	0	0	0
InSilicoVA	1.1.2	1	0	0
IntClust	0.0.2	1	0	0
IntegratedJM	1.4	0	0	0
IntegratedMRF	1.1.5	0	0	0
interplot	0.1.4	0	0	0
intsvy	1.9	0	0	0
IPtoCountry	0.0.1	0	0	0
ITEMAN	1.0	0	0	0
iWISA	1.0-2	0	0	0
JacobiEigen	0.2-2	0	0	0
JWileymisc	0.2.1	0	0	0
kamila	0.1.1.1	0	0	0
kdetrees	0.1.5	0	0	1
kfigr	1.2	0	0	0
Kmisc	0.5.0	0	0	1
knitrBootstrap	1.0.0	0	0	0
kobe	1.3.2	0	0	1
KSD	1.0.0	0	0	0
Lahman	5.0-0	0	0	1
LambertW	0.6.4	0	0	0
LANDD	1.1.0	1	0	0
largeVis	0.1.9.1	0	1	0
latex2exp	0.4.0	0	0	0
lda	1.4.2	0	0	0
ldatuning	0.2.0	0	0	0
LDheatmap	0.99-2	1	0	0
LEAP	0.2	0	0	0
learningCurve	1.0	0	0	0
learnstats	0.1.1	0	0	1
LexisPlotR	0.3	0	0	0
likeLTD	6.1.1	0	0	0
likert	1.3.3	0	0	0
linear.tools	1.3.0	0	0	0
llama	0.9.1	1	0	0
lme4	1.1-12	0	0	1
lmerTest	2.0-32	0	0	0
lmms	1.3.3	0	0	0
localgauss	0.35	1	0	0
LocFDRPois	1.0.0	0	0	1
logisticPCA	0.2	0	0	0
LOGIT	1.3	0	0	0
lsbclust	1.0.4	0	0	0
lsl	0.5.5	0	0	0
ltbayes	0.4	1	0	0
lvplot	0.2.0	0	0	0
MAc	1.1	0	0	4
macleish	0.3.0	0	0	0
MAd	0.8-2	0	0	4
maddison	0.1	0	0	0
magick	0.3	1	0	0
manhattanly	0.1.0	0	1	0
mapr	0.3.0	0	0	0
marked	1.1.11	0	0	0
marmap	0.9.5	0	0	0
matrixStats	0.51.0	0	0	0
MAVIS	1.1.2	0	0	0
MaxentVariableSelection	1.0-2	0	0	0
MCMC.OTU	1.0.10	0	0	0
MCMC.qpcr	1.2.2	0	0	0
mcprofile	0.2-3	0	0	0
mdsr	0.1.3	0	0	1
medicalrisk	1.2	0	0	0
medicare	0.1.0	0	0	0
MEGENA	1.3.5-2	0	1	1
MendelianRandomization	0.2.0	1	0	0
MergeGUI	0.2-1	1	0	0
merTools	0.2.1	0	0	0
metacoder	0.1.2	0	0	0
metagen	1.0	0	0	1
metaheur	0.2.0	0	0	0
MetaIntegrator	1.0.3	1	0	0
metaMix	0.2	1	0	0
metaplotr	0.0.3	0	0	0
meteogRam	1.0	0	0	1
Methplot	1.0	0	0	2
metricsgraphics	0.9.0	0	0	0
MGLM	0.0.7	0	0	0
mhtboot	1.3.3	0	0	0
microbenchmark	1.4-2.1	0	0	1
micromap	1.9.2	0	0	1
microplot	1.0-14	0	0	0
MiRAnorm	1.0.0	0	0	0
miscset	1.0.0	0	0	0
MissingDataGUI	0.2-5	1	0	0
mistat	1.0-4	0	0	1
mistral	2.1.0	0	0	0
MIXFIM	1.0	0	0	0
mixOmics	6.1.1	0	0	0
MixSIAR	3.1.7	2	0	0
mizer	0.2	0	0	1
mkin	0.9.44	0	0	0
mlmc	1.0.0	0	0	0
mlr	2.9	2	0	2
mlxR	3.1.0	0	0	0
Mobilize	2.16-4	0	0	1
modelr	0.1.0	0	0	0
Momocs	1.1.0	0	0	0
moonBook	0.1.3	0	0	2
morse	2.2.0	1	0	0
mosaic	0.14.4	0	0	2
mosaicData	0.14.0	0	0	0
mousetrap	2.0.0	0	0	0
moveHMM	1.2	0	0	0
mplot	0.7.9	0	0	1
mpoly	1.0.3	0	0	0
mrMLM	1.3	1	0	0
MRMR	0.1.4	0	0	0
MSCMT	1.0.0	0	0	0
MSG	0.3	0	0	0
MSGARCH	0.17	0	0	1
mtconnectR	1.0.1	1	0	0
MultiBD	0.2.0	0	0	0
multiDimBio	1.0.1	1	0	0
multilevelPSA	1.2.4	0	0	1
MultiMeta	0.1	0	0	1
multipanelfigure	0.8.3	0	0	0
munsell	0.4.3	0	0	0
musica	0.1.3	0	0	0
mvdalab	1.1	0	0	0
mvtboost	0.5.0	0	0	0
mwaved	1.1.4	1	0	0
myTAI	0.4.0	1	0	0
ncappc	0.2.1.1	0	0	0
NeatMap	0.3.6.2	0	0	2
netgen	1.3	0	0	0
networkreporting	0.1.1	0	0	0
NeuralNetTools	1.4.0	0	0	0
neuropsychology	0.2.4	0	0	0
NFP	0.99.1	1	0	0
nhstplot	1.0.0	0	0	0
nima	0.3.0	0	0	0
nimble	0.6-1	0	0	1
nlstimedist	1.0.1	0	0	0
NlsyLinks	2.0.6	0	0	1
nLTT	1.3.1	0	0	0
NMF	0.20.6	0	0	3
NNTbiomarker	0.29.11	0	0	0
NORRRM	1.0.0	0	0	1
nparACT	0.6	0	0	0
NPflow	0.10.1	0	0	0
npregfast	1.3.0	1	0	0
nullabor	0.3.1	0	0	1
nzelect	0.2.0	0	0	0
oapackage	2.0.23	0	0	0
oaPlots	0.0.25	0	0	0
oaxaca	0.1.3	0	0	0
obAnalytics	0.1.0	1	1	0
oddsratio	0.3.0	1	1	0
OECD	0.2.2	0	0	0
onlineCPD	1.0	1	0	0
OpasnetUtils	1.2.0	0	0	1
OpenStreetMap	0.3.3	1	0	0
openVA	1.0.1	1	0	0
optiRum	0.37.3	0	0	0
orderedLasso	1.7	0	0	2
orgR	0.9.0	0	0	0
OriGen	1.4.3	1	0	0
osmplotr	0.2.3	0	0	0
OutbreakTools	0.1-14	1	1	0
P2C2M	0.7.6	0	0	2
pa	1.2-1	0	0	2
packcircles	0.1.1	0	0	0
pagenum	1.0	0	0	0
PairedData	1.0.1	0	0	4
paleofire	1.1.9	0	0	0
palettetown	0.1.1	0	0	0
pAnalysis	2.0	0	0	0
pander	0.6.0	0	1	1
ParallelTree	0.1.1	0	0	0
ParamHelpers	1.9	1	0	0
partialAR	1.0.5	0	0	1
PASenseWear	1.0	0	0	0
PASWR2	1.0.2	0	0	0
patPRO	1.1.0	0	0	1
pauwels2014	1.0	0	0	2
PAWL	0.5	0	0	4
PBImisc	1.0	0	0	0
pcadapt	3.0.3	0	0	1
pcaPA	2.0.2	1	0	0
pcrcoal	1.2.0	0	0	0
pcrsim	1.0.1	1	0	0
PDQutils	0.1.5	0	0	0
PedCNV	0.1	0	0	3
pems.utils	0.2.17.8	0	0	0
peptider	0.2.2	0	0	0
pequod	0.0-5	0	0	0
performanceEstimation	1.1.0	0	0	0
permubiome	1.1	0	0	0
perry	0.2.0	0	0	1
perspectev	1.1	0	0	0
PGRdup	0.2.2.1	0	1	2
PhaseType	0.1.3	0	0	3
photobiologyInOut	0.4.12	0	1	0
photobiologyLamps	0.4.1	0	1	0
photobiologyLEDs	0.4.2	0	1	0
photobiologyPlants	0.4.0	0	1	0
Phxnlme	1.0.0	0	0	0
phylopath	0.2.0	0	0	0
phylosim	3.0.2	0	0	0
physiology	0.2.2	0	0	0
pid	0.36	0	0	0
pinbasic	0.1.0	0	0	0
pipe.design	0.4	0	0	0
pitchRx	1.8.2	0	0	1
PKgraph	1.7	1	0	0
PKreport	1.5	0	0	1
planar	1.6	0	0	0
PlasmaMutationDetector	1.5.2	1	0	0
platetools	0.0.2	0	0	0
playwith	0.9-54	1	0	1
plotluck	1.0.0	1	1	0
plotly	4.5.2	2	0	0
plotMElm	0.1.4	0	0	0
PlotPrjNetworks	1.0.0	0	0	0
plotROC	2.0.1	0	0	0
plspm	0.4.7	0	0	1
pmc	1.0.2	0	0	0
pogit	1.1.0	0	0	0
pointRes	1.1.2	0	0	0
pollstR	1.4.0	0	0	0
pomp	1.9	0	0	0
PopED	0.3.1	0	0	0
popEpi	0.4.0	0	0	0
PopGenReport	2.2.2	0	0	0
popgraph	1.4	0	0	2
poppr	2.2.1	0	0	0
popReconstruct	1.0-4	0	0	1
PortfolioEffectHFT	1.7	1	0	0
powerbydesign	1.0.3	0	0	0
PPtreeViz	1.3.0	0	0	0
prcbench	0.5.2	2	1	0
precintcon	2.3.0	0	0	0
precrec	0.5.2	0	0	0
predictionInterval	1.0.0	0	0	0
predictmeans	0.99	0	0	1
PredictTestbench	1.1.1	0	1	0
PReMiuM	3.1.3	0	0	0
preprocomb	0.3.0	0	0	0
preprosim	0.2.0	0	0	0
preproviz	0.2.0	0	0	0
preText	0.4.4	0	0	1
prevR	3.3	0	0	1
pRF	1.2	1	0	0
primerTree	1.0.3	0	0	0
prism	0.0.7	0	0	0
PRISMA	0.2-5	0	0	1
productplots	0.1.1	0	0	0
profileR	0.3-3	0	0	0
profr	0.3.1	0	0	2
profvis	0.3.2	0	0	0
ProgGUIinR	0.0-4	0	0	3
ProjectTemplate	0.7	0	0	2
proportion	1.2.3	0	1	1
propr	2.0.4	0	0	0
proteomics	0.2	0	0	1
PRROC	1.1	0	0	1
PSAboot	1.1.4	0	0	0
PSCBS	0.61.0	1	0	0
pscore	0.1-2	0	0	1
psd	1.0-1	0	0	1
pseval	1.3.0	0	0	1
PTXQC	0.80.14	0	0	1
pwr	1.2-0	0	0	0
pxweb	0.6.3	0	0	0
QCAtools	0.2.2	0	0	0
QCSimulator	0.0.1	0	0	0
qdap	2.2.5	1	0	0
qgraph	1.4.0	0	0	0
qicharts	0.5.1	0	0	0
quadrupen	0.2-4	0	0	1
QualInt	1.0.0	0	0	1
qualvar	0.1.0	0	0	0
quanteda	0.9.8.5	1	0	0
QuantumClone	0.16.8.19	0	0	0
quickpsy	0.1.4	1	0	0
quickReg	1.0.0	0	0	1
qwraps2	0.2.2	0	0	0
R2admb	0.7.13	0	0	1
r2glmm	0.1.0	0	0	0
R6	2.2.0	0	0	0
radiant.basics	0.6.0	0	0	0
radiant.data	0.6.0	0	0	0
radiant.model	0.6.0	1	0	0
radiant.multivariate	0.6.0	0	0	0
rags2ridges	2.1.1	0	0	1
ragtop	0.5	0	0	0
raincpc	0.4	0	0	1
rAltmetric	0.6	0	0	1
RAM	1.2.1.3	0	0	2
randomizeR	1.3	0	0	0
randomUniformForest	1.1.5	0	0	1
rangeMapper	0.3-0	0	0	0
rangemodelR	1.0.1	0	0	0
raptr	0.0.1	1	0	0
rasterVis	0.40	0	0	0
rattle	4.1.0	0	0	3
raw	0.1.2	0	0	0
rbefdata	0.3.5	0	0	1
rbison	0.5.0	0	0	0
rbokeh	0.5.0	0	0	0
rchess	0.1	0	0	0
rclinicaltrials	1.4.1	0	0	1
RcmdrPlugin.KMggplot2	0.2-3	0	0	0
RcmdrPlugin.MA	0.0-2	0	0	0
RCMIP5	1.2.0	0	0	0
rddtools	0.4.0	0	0	0
RDML	0.9-1	0	0	0
rdpla	0.1.0	0	0	0
RDS	0.7-7	0	0	0
reda	0.2.1	0	0	0
refund	0.1-16	0	0	0
refund.shiny	0.2.0	0	0	0
rem	1.1.2	0	0	0
repijson	0.1.0	0	0	0
replicationInterval	2.0.1	0	0	0
ReporteRs	0.8.7	1	0	0
reproducer	0.1.6	0	0	0
reval	2.0.0	0	0	0
rex	1.1.1	0	0	0
rfigshare	0.3.7	0	0	1
RFinfer	0.2.0	0	0	0
rfisheries	0.2	0	0	0
RFmarkerDetector	1.0.1	0	0	0
rfordummies	0.1.2	1	0	1
rfPermute	2.1.5	0	0	0
rgbif	0.9.5	0	0	0
RGraphics	2.0-14	0	0	3
RImagePalette	0.1.1	0	0	0
rinat	0.1.4	0	0	1
rivr	1.2	0	0	0
RJafroc	0.1.1	1	0	0
RmarineHeatWaves	0.13.1	0	0	0
rmcfs	1.1.2	1	0	0
rmetasim	3.0.5	0	0	0
rms	5.0-0	1	0	0
RndTexExams	1.4	0	0	0
rnoaa	0.6.5	0	0	0
rnpn	0.1.0	0	0	0
rnrfa	1.2	0	0	0
robCompositions	2.0.2	0	1	1
robmed	0.1.1	0	0	0
robustbase	0.92-6	0	0	1
RobustEM	1.0	0	0	1
robustHD	0.5.1	0	0	0
robustlmm	1.8	0	0	0
rollply	0.5.0	0	0	0
ropenaq	0.1.3	0	0	0
rorutadis	0.4.1	0	0	0
rotations	1.5	0	0	0
rpdo	0.2.0	0	0	0
rpf	0.53	0	0	0
rplexos	1.1.8	0	0	0
rplos	0.6.0	0	0	0
RPPanalyzer	1.4.3	1	0	0
rPref	1.1	0	0	2
rprev	0.2.2	0	0	0
rpsftm	1.0.1	0	0	0
rrepast	0.5.0	1	0	0
RSA	0.9.10	0	1	0
rSARP	1.0.0	0	0	0
RSDA	1.3	0	0	0
rSPACE	1.2.0	0	0	0
RSSL	0.6.1	0	0	0
rstan	2.12.1	1	0	0
rstanarm	2.12.1	1	0	1
RStoolbox	0.1.6	0	0	0
rsvd	0.6	0	0	0
rsvg	1.0	1	0	0
rtematres	0.2	0	0	0
rtf	0.4-11	0	0	2
rtide	0.0.2	0	0	0
rtimes	0.3.0	0	0	0
rtip	1.0.0	0	0	0
RtutoR	0.3	0	0	0
rvertnet	0.5.0	0	0	0
rWBclimate	0.1.3	0	0	1
rwirelesscom	1.4.3	0	0	0
rwty	1.0.1	0	0	0
ryouready	0.4	0	0	0
Rz	0.9-1	0	1	2
sadists	0.2.2	0	0	0
saeRobust	0.1.0	0	0	0
saeSim	0.8.0	0	0	0
SamplerCompare	1.2.7	0	0	0
sand	1.0.2	0	0	2
scanstatistics	0.1.0	0	0	0
scdhlm	0.3	0	0	0
SCGLR	2.0.3	0	0	0
SciencesPo	1.4.1	0	0	0
scmamp	0.2.55	1	0	0
SDaA	0.1-3	0	0	1
sdcMicro	4.6.1	0	0	0
SDEFSR	0.7.1.0	0	0	0
sdmvspecies	0.3.2	0	0	0
season	0.3-5	0	0	1
SEERaBomb	2016.1	1	0	0
seewave	2.0.5	1	0	0
selfea	1.0.1	0	0	1
SemiParBIVProbit	3.8	0	0	0
sensiPhy	0.5.0	0	0	0
sensitivity	1.12.2	0	0	0
SensMixed	2.0-10	0	0	0
SensusR	2.0.0	1	0	0
sentimentr	0.2.3	0	0	0
SeqFeatR	0.2.4	1	0	0
sgd	1.1	0	0	0
sglr	0.7	0	0	2
shazam	0.1.4	0	0	0
SHELF	1.2.1	0	0	0
shiny	0.14.2	0	0	1
ShinyItemAnalysis	0.2.0	0	0	0
shinystan	2.2.1	0	0	0
sidier	3.0.1	0	0	1
sigmoid	0.2.0	0	0	0
Sim.DiffProc	3.4	0	0	1
simcausal	0.5.1	0	1	0
SimDesign	1.4	0	0	1
simmer	3.5.0	0	1	0
simmr	0.3	1	0	0
simPH	1.3.9	0	0	0
simstudy	0.1.1	0	0	0
simTool	1.0.3	0	0	2
simulator	0.2.0	0	0	0
sitmo	1.0.0	0	0	0
SixSigma	0.9-3	0	0	0
sjPlot	2.1.1	1	0	0
sjstats	0.6.0	0	0	0
slackr	1.4.2	0	0	0
slim	0.1.0	0	1	1
SmarterPoland	1.7	0	0	1
SMFI5	1.0	0	0	2
smoof	1.4	0	0	0
snht	1.0.4	0	0	0
snpEnrichment	1.7.0	1	0	0
soc.ca	0.7.3	1	0	0
Sofi	0.16.4.8	0	0	0
solarius	0.3.0.2	0	0	0
sorvi	0.7.26	0	0	1
sotkanet	0.9.21	0	0	0
sourceR	0.2.0	0	0	0
SpaDES	1.3.1	0	0	1
sparkTable	1.2.0	1	0	1
sparsediscrim	0.2.3	0	0	0
SparseFactorAnalysis	1.0	0	0	0
sparsereg	1.2	0	0	0
sparsevar	0.0.9	0	0	0
spatialClust	1.1.1	0	0	0
spbabel	0.4.5	0	0	0
spcosa	0.3-6	1	0	0
specmine	1.0	1	0	0
spef	1.0-1	0	0	0
spikeSlabGAM	1.1-11	0	0	0
SPOT	1.1.0	0	0	0
sprm	1.2.2	0	0	0
squid	0.1.1	0	0	0
srvyr	0.2.0	0	0	0
ss3sim	0.9.2	0	0	0
starma	1.3	0	0	0
starmie	0.1.2	1	0	0
statar	0.6.2	0	0	0
statcheck	1.2.2	0	0	0
statebins	1.2.2	0	0	0
StatRank	0.0.6	0	0	0
strataG	1.0.5	0	0	0
StroupGLMM	0.1.0	1	0	0
structSSI	1.1.1	1	0	0
strvalidator	1.8.0	1	0	0
subspaceMOA	0.5.1	1	0	0
SuperLearner	2.0-19	0	0	1
surveillance	1.12.1	0	1	2
survminer	0.2.2	1	2	1
survMisc	0.5.3	1	0	0
SurvRank	0.1	0	0	0
sValues	0.1.4	0	0	0
svdvis	0.1	0	0	0
swfscMisc	1.2	0	0	0
SWMPr	2.1.7	0	0	0
synthpop	1.3-0	0	0	0
tableone	0.7.3	0	0	0
tabplot	1.3	1	1	0
tadaatoolbox	0.10.0	0	0	0
taRifx	1.0.6	0	0	4
TcGSA	0.10.1	1	0	0
tcgsaseq	1.0.1	1	0	2
tcR	2.2.1.11	0	0	1
tdr	0.11	0	0	1
TELP	1.0	1	0	0
texmexseq	0.3	0	0	0
Thermimage	2.2.3	0	0	0
thief	0.2	0	0	0
tidyjson	0.2.1	0	0	1
tidytext	0.1.2	0	0	0
tidyverse	1.0.0	0	0	0
tigerstats	0.2.7	0	0	0
tigger	0.2.8	0	0	0
tigris	0.3.3	0	0	0
tikzDevice	0.10-1	0	0	0
timeit	0.2.1	0	0	2
timeline	0.9	0	0	2
timelineS	0.1.1	0	0	0
TimeProjection	0.2.0	0	0	2
TippingPoint	1.1.0	0	0	0
tmap	1.6-1	0	0	0
Tmisc	0.1.10	0	0	0
toaster	0.5.4	1	0	0
tourr	0.5.4	0	0	2
tourrGui	0.4	0	0	4
toxboot	0.1.1	0	0	1
trackeR	0.0.4	0	1	0
trapezoid	2.0-0	0	0	1
TreatmentSelection	1.2.0	0	0	0
treeclim	2.0.0	0	0	0
treecm	1.2.2	0	0	0
treemap	2.4-1	0	0	0
treescape	1.10.17	0	0	0
trelliscope	0.9.7	0	0	1
TriMatch	0.9.7	0	0	0
TripleR	1.5.3	0	0	0
TSMining	1.0	0	0	1
tspmeta	1.2	0	0	0
TSS.RESTREND	0.1.02	0	0	1
tufterhandout	1.2.1	0	0	1
tvm	0.3.0	0	0	0
tweet2r	1.0	0	0	0
ubeR	0.1.3	0	0	0
UBL	0.0.5	1	0	0
ukgasapi	0.13	0	0	1
unvotes	0.1.0	0	0	0
UpSetR	1.3.0	0	1	1
useful	1.2.1	0	0	0
userfriendlyscience	0.4-1	1	0	2
UsingR	2.0-5	1	0	0
varian	0.2.2	0	0	0
vcdExtra	0.7-0	0	0	1
vcfR	1.2.0	0	0	0
VDAP	2.0.0	0	0	0
vdg	1.2.0	0	0	0
vdmR	0.2.2	2	1	0
VetResearchLMM	0.1.0	0	0	0
vipor	0.4.4	0	1	0
viridis	0.3.4	0	0	0
viridisLite	0.1.3	0	0	0
visreg	2.3-0	0	0	0
vmsbase	2.1.3	1	0	0
voxel	1.2.1	0	0	0
vrcp	0.1.1	0	0	0
VRPM	1.1	0	0	0
VSE	0.99	0	0	0
vtreat	0.5.28	0	0	0
VWPre	0.9.0	0	0	0
waffle	0.6.0	0	0	0
wakefield	0.3.0	0	0	0
walkr	0.3.3	0	0	0
warbleR	1.1.2	0	0	1
waterfalls	0.1.0	0	0	0
Wats	0.10.3	0	0	0
wbstats	0.1	0	0	0
wesanderson	0.3.2	0	0	2
WHO	0.2	0	0	0
wikipediatrend	1.1.10	0	0	1
wordbankr	0.2.0	0	0	0
wppExplorer	2.0-0	0	0	0
wrswoR.benchmark	0.1-1	0	0	0
wrswoR	1.0-1	0	0	0
x.ent	1.1.2	1	0	0
xgboost	0.4-4	0	0	0
XGR	1.0.4	1	0	0
xkcd	0.0.5	0	0	0
XLConnect	0.2-12	1	0	0
xtractomatic	3.1.1	0	1	0
xxIRT	1.1.0	0	0	0
yorkr	0.0.5	0	0	0
zebu	0.1.0	0	0	0
zoo	1.7-13	0	0	0
zooaRch	1.2	0	0	0

abctools (1.0.4)

Maintainer: Matt Nunes m.nunes@lancaster.ac.uk
Bug reports: https://github.com/dennisprangle/abctools/issues

0 errors | 0 warnings | 0 notes

abd (0.2-8)

Maintainer: Kevin M. Middleton middletonk@missouri.edu

0 errors | 0 warnings | 0 notes

ABHgenotypeR (1.0.1)

Maintainer: Stefan Reuscher reuscher.stefan@gmail.com
Bug reports: http://github.com/StefanReuscher/ABHgenotypeR/issues

0 errors | 0 warnings | 0 notes

ACDm (1.0.4)

Maintainer: Markus Belfrage markus.belfrage@gmail.com

0 errors | 0 warnings | 0 notes

ACSNMineR (0.16.8.25)

Maintainer: Paul Deveau paul.deveau@curie.fr

0 errors | 0 warnings | 0 notes

adapr (1.0)

Maintainer: Jonathan Gelfond gelfondjal@uthscsa.edu

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘pkgKitten’

AdaptGauss (1.2.4)

Maintainer: Michael Thrun mthrun@mathematik.uni-marburg.de

0 errors | 0 warnings | 0 notes

adegenet (2.0.1)

Maintainer: Thibaut Jombart thibautjombart@gmail.com

0 errors | 0 warnings | 0 notes

admixturegraph (1.0.1)

Maintainer: Thomas Mailund mailund@birc.au.dk
Bug reports: https://github.com/mailund/admixture_graph/issues

0 errors | 0 warnings | 0 notes

advclust (0.4)

Maintainer: Achmad Fauzi Bagus F fauzi.pandya@gmail.com

0 errors | 0 warnings | 0 notes

AFM (1.2.2)

Maintainer: Mathieu Beauvais beauvais.escp@gmail.com

0 errors | 0 warnings | 0 notes

aimPlot (1.0.0)

Maintainer: Yusman Kamaleri ybkamaleri@gmail.com

0 errors | 0 warnings | 0 notes

alakazam (0.2.5)

Maintainer: Jason Vander Heiden jason.vanderheiden@yale.edu
Bug reports: https://bitbucket.org/kleinstein/alakazam/issues

0 errors | 0 warnings | 0 notes

AlignStat (1.3.1)

Maintainer: Thomas Shafee thomas.shafee@gmail.com
Bug reports: https://github.com/TS404/AlignStat/issues

0 errors | 0 warnings | 0 notes

alm (0.4.0)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: http://www.github.com/ropensci/alm/issues

0 errors | 0 warnings | 2 notes

checking R code for possible problems ... NOTE
alm_events : parse_events: no visible global function definition for
  ‘setNames’
alm_ids : getalm: no visible global function definition for ‘is’
alm_plot: no visible global function definition for ‘na.omit’
Undefined global functions or variables:
  is na.omit setNames
Consider adding
  importFrom("methods", "is")
  importFrom("stats", "na.omit", "setNames")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

checking files in ‘vignettes’ ... NOTE
The following directory looks like a leftover from 'knitr':
  ‘figure’
Please remove from your package.

alphahull (2.1)

Maintainer: Beatriz Pateiro-Lopez beatriz.pateiro@usc.es

0 errors | 0 warnings | 0 notes

ameco (0.2.3)

Maintainer: Eric Persson expersso5@gmail.com
Bug reports: http://github.com/expersso/ameco/issues

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is 15.3Mb
  sub-directories of 1Mb or more:
    data  15.2Mb

AmpliconDuo (1.1)

Maintainer: Anja Lange anja.lange@uni-due.de

0 errors | 0 warnings | 0 notes

AmyloGram (1.0)

Maintainer: Michal Burdukiewicz michalburdukiewicz@gmail.com
Bug reports: https://github.com/michbur/AmyloGram/issues

0 errors | 0 warnings | 0 notes

ANOM (0.4.3)

Maintainer: Philip Pallmann p.pallmann@lancaster.ac.uk

0 errors | 0 warnings | 0 notes

antitrust (0.95.1)

Maintainer: Charles Taragin charles.taragin@usdoj.gov

0 errors | 0 warnings | 0 notes

aop (1.0.0)

Maintainer: Lyle D. Burgoon Lyle.D.Burgoon@usace.army.mil

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘graph’ ‘Rgraphviz’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

aoristic (0.6)

Maintainer: George Kikuchi gkikuchi@csufresno.edu

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking R code for possible problems ... NOTE
aoristic.all.graph: no visible global function definition for
  ‘aggregate’
aoristic.density: no visible global function definition for ‘as’
aoristic.density: no visible global function definition for
  ‘contourLines’
aoristic.density: no visible global function definition for ‘quantile’
aoristic.density: no visible global function definition for ‘aggregate’
aoristic.density: no visible global function definition for ‘slot’
aoristic.density : <anonymous>: no visible global function definition
... 27 lines ...
  aggregate as browseURL colorRampPalette contourLines dev.off image
  par png quantile slot
Consider adding
  importFrom("grDevices", "colorRampPalette", "contourLines", "dev.off",
             "png")
  importFrom("graphics", "image", "par")
  importFrom("methods", "as", "slot")
  importFrom("stats", "aggregate", "quantile")
  importFrom("utils", "browseURL")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

apsimr (1.2)

Maintainer: Bryan Stanfill bstanfill2003@gmail.com
Bug reports: https://github.com/stanfill/apsimr/issues

0 errors | 0 warnings | 1 note

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘APSIMBatch’

archetypes (2.2-0)

Maintainer: Manuel J. A. Eugster manuel@mjae.net

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘MASS’ ‘TSP’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking R code for possible problems ... NOTE
archetypes: no visible binding for global variable ‘history’
archmap: no visible global function definition for ‘chull’
archmap: no visible global function definition for ‘plot’
archmap: no visible global function definition for ‘points’
archmap: no visible global function definition for ‘polygon’
archmap: no visible global function definition for ‘text’
atypes_projection: no visible global function definition for ‘cmdscale’
atypes_projection: no visible global function definition for ‘dist’
barplot.archetypes : .below.default: no visible global function
... 80 lines ...
  head history layout lines matlines matplot median mtext optim par
  plot points polygon rgb rnorm sd solve_TSP symbols tail text
Consider adding
  importFrom("grDevices", "chull", "gray", "rgb")
  importFrom("graphics", "abline", "arrows", "axis", "box", "layout",
             "lines", "matlines", "matplot", "mtext", "par", "plot",
             "points", "polygon", "symbols", "text")
  importFrom("stats", "cmdscale", "dist", "ecdf", "median", "optim",
             "rnorm", "sd")
  importFrom("utils", "combn", "head", "history", "tail")
to your NAMESPACE file.

archivist (2.1)

Maintainer: Przemyslaw Biecek przemyslaw.biecek@gmail.com
Bug reports: https://github.com/pbiecek/archivist/issues

1 error | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘archivist-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aread
> ### Title: Read Artifacts Given as md5hashes from the Repository
> ### Aliases: aread
> 
> ### ** Examples
> 
> # read the object from local directory
> setLocalRepo(system.file("graphGallery", package = "archivist"))
> pl <- aread("f05f0ed0662fe01850ec1b928830ef32")
> # plot it
> pl
Error: ScalesList was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘archivist.github’

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘archivist.github’

ARPobservation (1.1)

Maintainer: James E. Pustejovsky jepusto@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
E_logitnorm : <anonymous>: no visible global function definition for
  ‘integrate’
F_const : <anonymous>: no visible global function definition for
  ‘runif’
F_exp : <anonymous>: no visible global function definition for ‘rexp’
F_gam : <anonymous>: no visible global function definition for ‘rgamma’
F_gam_mix : <anonymous>: no visible global function definition for
  ‘rbinom’
F_gam_mix : <anonymous>: no visible global function definition for
... 41 lines ...
  ‘uniroot’
rweibull_eq: no visible global function definition for ‘runif’
smooth_cov: no visible global function definition for ‘dist’
Undefined global functions or variables:
  aggregate dist integrate nobs pgamma qnorm quantile rbinom rexp
  rgamma rnorm runif rweibull uniroot var
Consider adding
  importFrom("stats", "aggregate", "dist", "integrate", "nobs", "pgamma",
             "qnorm", "quantile", "rbinom", "rexp", "rgamma", "rnorm",
             "runif", "rweibull", "uniroot", "var")
to your NAMESPACE file.

ARTool (0.10.4)

Maintainer: Matthew Kay mjskay@umich.edu
Bug reports: https://github.com/mjskay/ARTool/issues/new

0 errors | 0 warnings | 0 notes

asremlPlus (2.0-12)

Maintainer: Chris Brien Chris.Brien@unisa.edu.au

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘asreml’

asVPC (1.0.2)

Maintainer: Eun-Kyung Lee lee.eunk@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
VPC.graph : findQuantile: no visible global function definition for
  ‘quantile’
VPC.graph : findQuantileCI : <anonymous>: no visible global function
  definition for ‘quantile’
asVPC.binW: no visible global function definition for ‘median’
asVPC.binW : <anonymous>: no visible global function definition for
  ‘quantile’
asVPC.binW: no visible global function definition for ‘quantile’
asVPC.distanceW: no visible global function definition for ‘median’
asVPC.distanceW : <anonymous>: no visible global function definition
  for ‘quantile’
asVPC.distanceW: no visible global function definition for ‘quantile’
makeCOVbin: no visible global function definition for ‘quantile’
makeCOVbin: no visible global function definition for ‘median’
read_Simdata: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  median quantile read.table
Consider adding
  importFrom("stats", "median", "quantile")
  importFrom("utils", "read.table")
to your NAMESPACE file.

automap (1.0-14)

Maintainer: Paul Hiemstra paul@numbertheory.nl

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘ggplot2’ ‘gpclib’ ‘maptools’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking R code for possible problems ... NOTE
autoKrige: no visible global function definition for ‘as.formula’
autofitVariogram: no visible global function definition for
  ‘modifyList’
autofitVariogram: no visible global function definition for ‘is’
autofitVariogram: no visible global function definition for ‘median’
autokrige.vgm.panel: no visible global function definition for ‘grey’
compare.cv: no visible global function definition for ‘quantile’
create_new_data: no visible global function definition for ‘chull’
cv.compare.ggplot: no visible global function definition for ‘ggplot’
... 29 lines ...
  geom_path geom_point ggplot grey is median modifyList qnorm quantile
  scale_color_gradient2 scale_size_continuous scale_x_continuous
  scale_y_continuous sd
Consider adding
  importFrom("grDevices", "chull", "grey")
  importFrom("methods", "is")
  importFrom("stats", "IQR", "as.formula", "cor", "median", "qnorm",
             "quantile", "sd")
  importFrom("utils", "modifyList")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

BACA (1.3)

Maintainer: Vittorio Fortino vittorio.fortino@ttl.fi

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘RDAVIDWebService’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

BacArena (1.5.1)

Maintainer: Johannes Zimmermann j.zimmermann@iem.uni-kiel.de
Bug reports: https://github.com/euba/BacArena/issues

0 errors | 0 warnings | 2 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘sybilSBML’

checking R code for possible problems ... NOTE
plotCurves2,Eval: no visible global function definition for ‘matplot’
plotTotFlux,Eval: no visible global function definition for ‘matplot’
statPheno,Eval: no visible global function definition for ‘matplot’
statSpec,Eval: no visible global function definition for ‘matplot’
Undefined global functions or variables:
  matplot
Consider adding
  importFrom("graphics", "matplot")
to your NAMESPACE file.

BACCT (1.0)

Maintainer: Hongtao Zhang hongtao.zhang@abbvie.com

1 error | 0 warnings | 0 notes

checking whether package ‘BACCT’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/BACCT.Rcheck/00install.out’ for details.

backShift (0.1.3)

Maintainer: Christina Heinze heinze@stat.math.ethz.ch
Bug reports: https://github.com/christinaheinze/backShift/issues

1 error | 0 warnings | 0 notes

checking whether package ‘backShift’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/backShift.Rcheck/00install.out’ for details.

bamdit (3.0.0)

Maintainer: Pablo Emilio Verde pabloemilio.verde@hhu.de

1 error | 0 warnings | 0 notes

checking whether package ‘bamdit’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/bamdit.Rcheck/00install.out’ for details.

bayesAB (0.7.0)

Maintainer: Frank Portman frank1214@gmail.com
Bug reports: https://github.com/FrankPortman/bayesAB/issues

0 errors | 0 warnings | 0 notes

bayesbio (1.0.0)

Maintainer: Andrew McKenzie amckenz@gmail.com

0 errors | 0 warnings | 0 notes

BBEST (0.1-6)

Maintainer: Anton Gagin av.gagin@gmail.com

0 errors | 0 warnings | 0 notes

bbmle (1.0.18)

Maintainer: Ben Bolker bolker@mcmaster.ca

0 errors | 0 warnings | 0 notes

BCEA (2.2-3)

Maintainer: Gianluca Baio gianluca@stats.ucl.ac.uk

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘BCEA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: evppi
> ### Title: Expected Value of Perfect Partial Information (EVPPI) for
> ###   selected parameters
> ### Aliases: evppi evppi.default
> ### Keywords: Health economic evaluation Expected value of partial
... 12 lines ...
> # 
> # Runs the health economic evaluation using BCEA
> m <- bcea(e,c,ref=2,interventions=treats)
> #
> # Computes the EVPPI for a bunch of parameters
> inp <- CreateInputs(vaccine)
Error in CreateInputs(vaccine) : 
  You need to install the package 'R2jags'. Please run in your R terminal:
 install.packages('R2jags')
Execution halted
** found \donttest examples: check also with --run-donttest

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘INLA’

BCellMA (0.1)

Maintainer: Olena Ohlei olena.ohlei@student.uni-luebeck.de

0 errors | 0 warnings | 0 notes

Bclim (3.1.0)

Maintainer: Andrew Parnell Andrew.Parnell@ucd.ie

0 errors | 0 warnings | 0 notes

bcp (4.0.0)

Maintainer: John W. Emerson john.emerson@yale.edu

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘DNAcopy’

bcrm (0.4.6)

Maintainer: Michael Sweeting mjs212@medschl.cam.ac.uk

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘bcrm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bcrm
> ### Title: Bayesian Continual Reassessment Method for Phase I
> ###   Dose-Escalation Trials
> ### Aliases: bcrm
> 
... 133 lines ...
> ## Using rjags (requires JAGS to be installed)
> TwoPLogistic.mean.bcrm<-bcrm(stop=list(nmax=18),data=data,sdose=sdose
+   ,dose=dose,ff="logit2",prior.alpha=list(4,mu,Sigma),target.tox=target.tox
+   ,constrain=FALSE,pointest="mean",method="rjags")
Error: .onLoad failed in loadNamespace() for 'rjags', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/Users/hadley/R-revdep/rjags/libs/rjags.so':
  dlopen(/Users/hadley/R-revdep/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
  Referenced from: /Users/hadley/R-revdep/rjags/libs/rjags.so
  Reason: image not found
Execution halted

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘BRugs’

bde (1.0.1)

Maintainer: Guzman Santafe guzman.santafe@unavarra.es

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
mise: no visible global function definition for ‘integrate’
density,BrVitale : density.vitale : <anonymous>: no visible global
  function definition for ‘dbeta’
density,Chen99Kernel : <anonymous>: no visible global function
  definition for ‘dbeta’
density,HirukawaJLNKernel : <anonymous>: no visible global function
  definition for ‘dbeta’
density,MicroBetaChen99Kernel : <anonymous>: no visible global function
  definition for ‘dbeta’
... 19 lines ...
  ‘dbeta’
setNormalizationConstants,MicroBetaChen99Kernel : <anonymous>: no
  visible global function definition for ‘integrate’
show,BoundedDensity: no visible global function definition for ‘str’
show,KernelDensity: no visible global function definition for ‘str’
Undefined global functions or variables:
  dbeta integrate runif str
Consider adding
  importFrom("stats", "dbeta", "integrate", "runif")
  importFrom("utils", "str")
to your NAMESPACE file.

bdscale (2.0.0)

Maintainer: Dave Mills dave.a.mills@gmail.com

0 errors | 0 warnings | 0 notes

bdvis (0.2.6)

Maintainer: Vijay Barve vijay.barve@gmail.com

0 errors | 0 warnings | 0 notes

benchmark (0.3-6)

Maintainer: Manuel J. A. Eugster manuel@mjae.net

0 errors | 0 warnings | 4 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘Rgraphviz’

checking dependencies in R code ... NOTE
'library' or 'require' call to ‘multcomp’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking R code for possible problems ... NOTE
as.dataset: no visible global function definition for ‘terms’
as.dataset: no visible global function definition for ‘as.formula’
as.psychobench: no visible global function definition for ‘is’
as.psychobench: no visible global function definition for ‘reshape’
benchmark: no visible global function definition for ‘as.formula’
benchmark: no visible global function definition for ‘predict’
benchmark: no visible global function definition for ‘na.omit’
beplot0.AlgorithmPerformance : <anonymous>: no visible global function
  definition for ‘legend’
... 81 lines ...
  theme_text value
Consider adding
  importFrom("grDevices", "col2rgb", "gray", "rgb")
  importFrom("graphics", "abline", "axis", "barplot", "box", "layout",
             "legend", "lines", "mtext", "par", "points", "rect",
             "segments")
  importFrom("methods", "is", "new")
  importFrom("stats", "as.formula", "cancor", "lm", "median", "na.omit",
             "predict", "reshape", "terms")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘graph’

benchmarkme (0.3.0)

Maintainer: Colin Gillespie csgillespie@gmail.com
Bug reports: https://github.com/csgillespie/benchmarkme/issues

0 errors | 0 warnings | 0 notes

benchmarkmeData (0.3.0)

Maintainer: Colin Gillespie csgillespie@gmail.com
Bug reports: https://github.com/csgillespie/benchmarkme-data/issues

0 errors | 0 warnings | 0 notes

bife (0.1)

Maintainer: Amrei Stammann amrei.stammann@hhu.de

0 errors | 0 warnings | 0 notes

binom (1.1-1)

Maintainer: Sundar Dorai-Raj sdorairaj@gmail.com

0 errors | 0 warnings | 3 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘ggplot2’ ‘lattice’ ‘polynom’ ‘tcltk’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking R code for possible problems ... NOTE
binom.bayes: no visible global function definition for ‘qbeta’
binom.bayes: no visible global function definition for ‘pbeta’
binom.bayes.densityplot: no visible global function definition for
  ‘ggplot’
binom.bayes.densityplot: no visible global function definition for
  ‘aes_string’
binom.bayes.densityplot: no visible global function definition for
  ‘geom_polygon’
binom.bayes.densityplot: no visible global function definition for
... 167 lines ...
  tkpack tkradiobutton tkscale tktoplevel tkwm.title trellis.par.get
  trellis.par.set uniroot xlab xlim xyplot ylab ylim
Consider adding
  importFrom("grDevices", "heat.colors")
  importFrom("graphics", "abline", "axis", "box", "legend", "lines",
             "plot")
  importFrom("stats", "aggregate", "approx", "binomial", "dbeta",
             "dbinom", "dnorm", "optim", "pbeta", "pnorm", "predict",
             "qbeta", "qnorm", "rbinom", "reorder", "spline", "uniroot")
  importFrom("utils", "find")
to your NAMESPACE file.

biogas (1.4.0)

Maintainer: Sasha D. Hafner saha@kbm.sdu.dk

0 errors | 0 warnings | 0 notes

biogram (1.3)

Maintainer: Michal Burdukiewicz michalburdukiewicz@gmail.com
Bug reports: https://github.com/michbur/biogram/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: slam
Quitting from lines 15-40 (overview.Rmd) 
Error: processing vignette 'overview.Rmd' failed with diagnostics:
formal argument "panel.grid.major" matched by multiple actual arguments
Execution halted

Biograph (2.0.6)

Maintainer: Frans Willekens willekens@nidi.nl

0 errors | 0 warnings | 0 notes

bioinactivation (1.1.3)

Maintainer: Alberto Garre garre.alberto@gmail.com

0 errors | 0 warnings | 0 notes

biomod2 (3.3-7)

Maintainer: Damien Georges damien.georges2@gmail.com
Bug reports: https://r-forge.r-project.org/R/?group_id=302

0 errors | 0 warnings | 0 notes

BioPET (0.2.0)

Maintainer: Jeremy Roth jhroth@uw.edu

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘BioPET-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: enrichment_analysis
> ### Title: Prognostic Enrichment with Real Data
> ### Aliases: enrichment_analysis
> 
> ### ** Examples
> 
> data(dcaData)
> 
> ## using a single biomarker in the dataset
> analysis.single.marker <- enrichment_analysis(Cancer ~ Marker1,
+ data=dcaData,
+ reduction.under.treatment=0.3,
+ cost.screening=100,
+ cost.keeping=1000)
Warning in mean.default(response) :
  argument is not numeric or logical: returning NA
Error: Unsupported use of matrix or array for column indexing
Execution halted

bioplots (0.0.1)

Maintainer: Jianqiang Sun wukong@bi.a.u-tokyo.ac.jp

0 errors | 0 warnings | 0 notes

BioStatR (2.0.0)

Maintainer: Frederic Bertrand frederic.bertrand@math.unistra.fr

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
binom.ci : bc: no visible global function definition for ‘qf’
binom.ci : bc: no visible global function definition for ‘qnorm’
cvar: no visible global function definition for ‘sd’
eta2: no visible global function definition for ‘lm’
eta2: no visible global function definition for ‘as.formula’
gg_qqplot: no visible binding for global variable ‘qnorm’
gg_qqplot: no visible global function definition for ‘quantile’
panel.hist: no visible global function definition for ‘par’
panel.hist: no visible global function definition for ‘hist’
panel.hist: no visible global function definition for ‘rect’
plotcdf2: no visible global function definition for ‘colorRampPalette’
plotcdf2 : jet.colors: no visible global function definition for ‘gray’
plotcdf2: no visible global function definition for ‘persp’
poi.ci: no visible global function definition for ‘qchisq’
Undefined global functions or variables:
  as.formula colorRampPalette gray hist lm par persp qchisq qf qnorm
  quantile rect sd
Consider adding
  importFrom("grDevices", "colorRampPalette", "gray")
  importFrom("graphics", "hist", "par", "persp", "rect")
  importFrom("stats", "as.formula", "lm", "qchisq", "qf", "qnorm",
             "quantile", "sd")
to your NAMESPACE file.

BlandAltmanLeh (0.3.1)

Maintainer: Bernhard Lehnert bernhard.lehnert@uni-greifswald.de

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 171-174 (Intro.Rmd) 
Error: processing vignette 'Intro.Rmd' failed with diagnostics:
Don't know how to add o to a plot
Execution halted

blkbox (1.0)

Maintainer: Boris Guennewig b.guennewig@garvan.org.au

0 errors | 0 warnings | 2 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘bigrf’

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

blockseg (0.2)

Maintainer: Julien Chiquet julien.chiquet@gmail.com

0 errors | 0 warnings | 0 notes

blscrapeR (1.0.2)

Maintainer: Kris Eberwein eberwein@knights.ucf.edu
Bug reports: https://github.com/keberwein/blscrapeR/issues

0 errors | 0 warnings | 0 notes

bmlm (1.2.1)

Maintainer: Matti Vuorre mv2521@columbia.edu
Bug reports: http://github.com/mvuorre/bmlm/issues/

0 errors | 0 warnings | 1 note

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

bmmix (0.1-2)

Maintainer: Thibaut Jombart t.jombart@imperial.ac.uk

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking R code for possible problems ... NOTE
bmmix : LL.y: no visible global function definition for ‘dmultinom’
bmmix : LL.x : <anonymous>: no visible global function definition for
  ‘dmultinom’
bmmix : LPrior.alpha: no visible global function definition for ‘dexp’
bmmix : alpha.move: no visible global function definition for ‘rnorm’
bmmix : alpha.move: no visible global function definition for ‘runif’
bmmix : phi.move: no visible global function definition for ‘rnorm’
bmmix : phi.move: no visible global function definition for ‘runif’
bmmix: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  dexp dmultinom read.table rnorm runif
Consider adding
  importFrom("stats", "dexp", "dmultinom", "rnorm", "runif")
  importFrom("utils", "read.table")
to your NAMESPACE file.

bodenmiller (0.1)

Maintainer: Yann Abraham yann.abraham@gmail.com
Bug reports: https://github.com/yannabraham/bodenmiller/issues

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  8.9Mb
  sub-directories of 1Mb or more:
    data   8.7Mb

bootnet (0.3)

Maintainer: Sacha Epskamp mail@sachaepskamp.com

0 errors | 0 warnings | 0 notes

braidReports (0.5.3)

Maintainer: Nathaniel R. Twarog nathaniel.twarog@stjude.org

0 errors | 0 warnings | 0 notes

brainGraph (0.72.0)

Maintainer: Christopher G. Watson cgwatson@bu.edu
Bug reports: https://groups.google.com/forum/?hl=en#!forum/brainGraph-help

1 error | 0 warnings | 0 notes

checking whether package ‘brainGraph’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/brainGraph.Rcheck/00install.out’ for details.

breakpoint (1.2)

Maintainer: Priyadarshana W.J.R.M. mjayawardana@swin.edu.au

0 errors | 0 warnings | 0 notes

bridgedist (0.1.0)

Maintainer: Bruce Swihart bruce.swihart@gmail.com
Bug reports: http://github.com/swihart/bridgedist/issues

0 errors | 0 warnings | 0 notes

brms (1.1.0)

Maintainer: Paul-Christian Buerkner paul.buerkner@gmail.com
Bug reports: https://github.com/paul-buerkner/brms/issues

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  23: FUN(X[[i]], ...)
  24: element_render(theme = theme, element = paste0("axis.title.", label, modify), label = labels[[label]][[i]], 
         expand_x = label == "y", expand_y = label == "x") at /Users/hadley/Documents/ggplot/ggplot2/R/layout.R:176
  25: calc_element(element, theme) at /Users/hadley/Documents/ggplot/ggplot2/R/theme-elements.r:149
  26: Reduce(combine_elements, parents, theme[[element]]) at /Users/hadley/Documents/ggplot/ggplot2/R/theme.r:538
  27: f(init, x[[i]])
  
  testthat results ================================================================
  OK: 857 SKIPPED: 1 FAILED: 1
  1. Error: plotting functions don't throw unexpected errors (@tests.plots.R#11) 
  
  Error: testthat unit tests failed
  Execution halted

broman (0.64-3)

Maintainer: Karl W Broman kbroman@biostat.wisc.edu

0 errors | 0 warnings | 0 notes

broom (0.4.1)

Maintainer: David Robinson admiral.david@gmail.com
Bug reports: http://github.com/dgrtwo/broom/issues

0 errors | 0 warnings | 0 notes

brotli (0.8)

Maintainer: Jeroen Ooms jeroen.ooms@stat.ucla.edu
Bug reports: http://github.com/jeroenooms/brotli/issues

0 errors | 0 warnings | 0 notes

bsam (1.1.0)

Maintainer: Ian Jonsen ian.jonsen@mq.edu.au
Bug reports: https://github.com/ianjonsen/bsam/issues

1 error | 0 warnings | 0 notes

checking whether package ‘bsam’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/bsam.Rcheck/00install.out’ for details.

BTSPAS (2014.0901)

Maintainer: Carl J Schwarz cschwarz@stat.sfu.ca

1 error | 0 warnings | 1 note

checking whether package ‘BTSPAS’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/BTSPAS.Rcheck/00install.out’ for details.

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘BRugs’

burnr (0.1.1)

Maintainer: Steven Malevich malevich@email.arizona.edu
Bug reports: https://github.com/ltrr-arizona-edu/burnr/issues

0 errors | 0 warnings | 0 notes

CALF (0.1.3)

Maintainer: Stephanie Lane slane@unc.edu

0 errors | 0 warnings | 0 notes

capm (0.9.1)

Maintainer: Oswaldo Santos Baquero oswaldosant@gmail.com

0 errors | 0 warnings | 0 notes

caret (6.0-72)

Maintainer: Max Kuhn mxkuhn@gmail.com
Bug reports: https://github.com/topepo/caret/issues

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  5.0Mb
  sub-directories of 1Mb or more:
    data     1.5Mb
    models   2.2Mb

caretEnsemble (2.0.0)

Maintainer: Zachary A. Deane-Mayer zach.mayer@gmail.com
Bug reports: https://github.com/zachmayer/caretEnsemble/issues

0 errors | 0 warnings | 0 notes

cate (1.0.4)

Maintainer: Qingyuan Zhao qyzhao@stanford.edu

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘sva’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

catenary (1.1.1)

Maintainer: Jonathan Tuke simon.tuke@adelaide.edu.au

0 errors | 0 warnings | 0 notes

Causata (4.2-0)

Maintainer: Justin Hemann justinh@causata.com

0 errors | 0 warnings | 5 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.

checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘integration_tests’

checking R code for possible problems ... NOTE
BinaryCut: no visible global function definition for ‘quantile’
CleanNaFromContinuousFunction: no visible global function definition
  for ‘median’
CleanNaFromContinuousFunction: no visible global function definition
  for ‘na.omit’
GetMetadata.Connect: no visible global function definition for
  ‘dbGetQuery’
GetRawData.Connect: no visible global function definition for
  ‘dbGetQuery’
... 12 lines ...
  ‘contrasts’
predict.GlmnetModelDefinition: no visible global function definition
  for ‘predict’
Undefined global functions or variables:
  coef contrasts dbGetQuery median model.matrix na.omit predict
  quantile read.csv sd terms.formula
Consider adding
  importFrom("stats", "coef", "contrasts", "median", "model.matrix",
             "na.omit", "predict", "quantile", "sd", "terms.formula")
  importFrom("utils", "read.csv")
to your NAMESPACE file.

checking line endings in Makefiles ... NOTE
Found the following Makefile(s) without a final LF:
  inst/doc/Makefile
Some ‘make’ programs ignore lines not ending in LF.

checking files in ‘vignettes’ ... NOTE
The following files look like leftovers/mistakes:
  ‘Causata-vignette.log’
Please remove them from your package.
The following directory looks like a leftover from 'knitr':
  ‘figure’
Please remove from your package.

cda (2.0.0)

Maintainer: Baptiste Auguie baptiste.auguie@gmail.com
Bug reports: https://github.com/baptiste/cda/issues

0 errors | 0 warnings | 0 notes

cdom (0.1.0)

Maintainer: Philippe Massicotte pm@bios.au.dk
Bug reports: https://github.com/PMassicotte/cdom/issues

0 errors | 0 warnings | 0 notes

ChainLadder (0.2.3)

Maintainer: Markus Gesmann markus.gesmann@googlemail.com
Bug reports: https://github.com/mages/ChainLadder/issues

0 errors | 0 warnings | 0 notes

ChannelAttributionApp (1.1)

Maintainer: Davide Altomare davide.altomare@gmail.com

0 errors | 0 warnings | 1 note

checking DESCRIPTION meta-information ... NOTE
Checking should be performed on sources prepared by ‘R CMD build’.

ChaosGame (0.2)

Maintainer: Manuela Schreyer manuelalarissa.schreyer@sbg.ac.at

0 errors | 0 warnings | 0 notes

checkmate (1.8.2)

Maintainer: Michel Lang michellang@gmail.com
Bug reports: https://github.com/mllg/checkmate/issues

0 errors | 0 warnings | 0 notes

choroplethr (3.5.2)

Maintainer: Ari Lamstein arilamstein@gmail.com
Bug reports: https://github.com/arilamstein/choroplethr/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...

        • KN = Know Nothing

        • AM = Anti-Masonic

        • N = Nullifier

... 8 lines ...

     Taken from <URL:
     http://en.wikipedia.org/wiki/List_of_United_States_presidential_election_results_by_state>
     3/20/2014.


Loading required package: lattice
Quitting from lines 33-61 (h-creating-your-own-maps.Rmd) 
Error: processing vignette 'h-creating-your-own-maps.Rmd' failed with diagnostics:
package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
Execution halted

choroplethrAdmin1 (1.1.0)

Maintainer: Ari Lamstein arilamstein@gmail.com

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is 18.0Mb
  sub-directories of 1Mb or more:
    data  17.9Mb

choroplethrMaps (1.0)

Maintainer: Ari Lamstein arilamstein@gmail.com
Bug reports: https://github.com/trulia/choroplethrMaps/issues

0 errors | 0 warnings | 0 notes

chron (2.3-47)

Maintainer: Kurt Hornik Kurt.Hornik@R-project.org

0 errors | 0 warnings | 0 notes

CINOEDV (2.0)

Maintainer: Junliang Shang shangjunliang110@163.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
BatCINOEDV: no visible global function definition for ‘graphics.off’
CoInformation: no visible global function definition for ‘combn’
CombinationEntropy: no visible global function definition for ‘hist’
ConstructCompleteGraph: no visible global function definition for
  ‘dev.new’
ConstructCompleteGraph: no visible global function definition for ‘par’
ConstructCompleteGraph: no visible global function definition for
  ‘plot’
DegreeAnalysis: no visible global function definition for ‘dev.new’
... 19 lines ...
PlotTopEffects: no visible global function definition for ‘title’
Undefined global functions or variables:
  barplot combn dev.new graphics.off hist install.packages layout lines
  par plot rainbow runif title
Consider adding
  importFrom("grDevices", "dev.new", "graphics.off", "rainbow")
  importFrom("graphics", "barplot", "hist", "layout", "lines", "par",
             "plot", "title")
  importFrom("stats", "runif")
  importFrom("utils", "combn", "install.packages")
to your NAMESPACE file.

cjoint (2.0.4)

Maintainer: Anton Strezhnev astrezhnev@fas.harvard.edu

0 errors | 0 warnings | 0 notes

classify (1.3)

Maintainer: Dr Chris Wheadon chris.wheadon@gmail.com

1 error | 0 warnings | 0 notes

checking whether package ‘classify’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/classify.Rcheck/00install.out’ for details.

classyfire (0.1-2)

Maintainer: Eleni Chatzimichali ea.chatzimichali@gmail.com
Bug reports: https://github.com/eaHat/classyfire/issues

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
.boxRadial: no visible global function definition for ‘predict’
.radialSVM: no visible global function definition for ‘predict’
cfPredict: no visible global function definition for ‘predict’
getPerm5Num: no visible global function definition for ‘median’
getPerm5Num: no visible global function definition for ‘quantile’
ggClassPred: no visible global function definition for ‘ftable’
ggEnsHist: no visible global function definition for ‘sd’
ggPermHist: no visible global function definition for ‘sd’
Undefined global functions or variables:
  ftable median predict quantile sd
Consider adding
  importFrom("stats", "ftable", "median", "predict", "quantile", "sd")
to your NAMESPACE file.

clhs (0.5-6)

Maintainer: Pierre Roudier roudierp@landcareresearch.co.nz

0 errors | 0 warnings | 0 notes

clifro (3.0-0)

Maintainer: Blake Seers blake.seers@gmail.com
Bug reports: https://github.com/ropensci/clifro/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: ggplot2
Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=Auckland&zoom=8&size=640x640&scale=2&maptype=hybrid&language=en-EN&sensor=false
Information from URL : http://maps.googleapis.com/maps/api/geocode/json?address=Auckland&sensor=false
Quitting from lines 136-154 (cfStation.Rmd) 
Error: processing vignette 'cfStation.Rmd' failed with diagnostics:
GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

ClimClass (2.1.0)

Maintainer: Emanuele Eccel emanuele.eccel@fmach.it

0 errors | 0 warnings | 0 notes

climwin (1.0.0)

Maintainer: Liam D. Bailey liam.bailey@anu.edu.au
Bug reports: https://github.com/LiamDBailey/climwin/issues

0 errors | 0 warnings | 0 notes

clusterfly (0.4)

Maintainer: Hadley Wickham h.wickham@gmail.com

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘rggobi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

clusternomics (0.1.0)

Maintainer: Evelina Gabasova egabasova@gmail.com
Bug reports: https://github.com/evelinag/clusternomics/issues

0 errors | 0 warnings | 0 notes

ClusterR (1.0.3)

Maintainer: Lampros Mouselimis mouselimislampros@gmail.com
Bug reports: https://github.com/mlampros/ClusterR/issues

0 errors | 0 warnings | 0 notes

clustrd (1.0.2)

Maintainer: Angelos Markos amarkos@gmail.com

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘clustrd-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cluspca
> ### Title: Joint dimension reduction and clustering of continuous data.
> ### Aliases: cluspca
> 
> ### ** Examples
> 
> data(macro)
> outRKM = cluspca(macro, 3, 2, method = "RKM", rotation = "varimax")
> plot(outRKM, cludesc = TRUE)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

cmaesr (1.0.2)

Maintainer: Jakob Bossek j.bossek@gmail.com
Bug reports: https://github.com/jakobbossek/cmaesr/issues

0 errors | 0 warnings | 0 notes

cobalt (1.3.0)

Maintainer: Noah Greifer noah@unc.edu

0 errors | 0 warnings | 0 notes

cocoreg (0.1.0)

Maintainer: Jussi Korpela jussi.korpela@iki.fi

0 errors | 0 warnings | 0 notes

codingMatrices (0.2.1)

Maintainer: Bill Venables Bill.Venables@gmail.com

0 errors | 0 warnings | 0 notes

codyn (1.1.0)

Maintainer: Matthew B. Jones jones@nceas.ucsb.edu
Bug reports: https://github.com/laurenmh/codyn/issues

0 errors | 0 warnings | 0 notes

coefplot (1.2.4)

Maintainer: Jared P. Lander packages@jaredlander.com

0 errors | 0 warnings | 0 notes

cofeatureR (1.0.1)

Maintainer: Fong Chun Chan fongchunchan@gmail.com
Bug reports: https://github.com/tinyheero/cofeatureR/issues

0 errors | 0 warnings | 0 notes

CollapsABEL (0.10.8)

Maintainer: Kaiyin Zhong kindlychung@gmail.com
Bug reports: https://bitbucket.org/kindlychung/collapsabel2/issues

1 error | 0 warnings | 0 notes

checking whether package ‘CollapsABEL’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/CollapsABEL.Rcheck/00install.out’ for details.

coloc (2.3-1)

Maintainer: Chris Wallace chris.wallace@cimr.cam.ac.uk
Bug reports: https://github.com/chr1swallace/coloc/issues

0 errors | 1 warning | 2 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: colorspace
Loading required package: MASS
Loading required package: BMA
Loading required package: survival
Loading required package: leaps
Loading required package: robustbase

Attaching package: ‘robustbase’

The following object is masked from ‘package:survival’:

    heart

Loading required package: inline
Loading required package: rrcov
Scalable Robust Estimators with High Breakdown Point (version 1.4-3)


Error: processing vignette 'vignette.Rnw' failed with diagnostics:
 chunk 7 
Error in library(snpStats) : there is no package called ‘snpStats’
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘snpStats’

checking R code for possible problems ... NOTE
approx.bf.p: no visible global function definition for ‘qnorm’
coeff.plot: no visible global function definition for ‘polygon’
coeff.plot: no visible global function definition for ‘abline’
coeff.plot: no visible global function definition for ‘arrows’
coeff.plot: no visible global function definition for ‘points’
coeff.plot: no visible global function definition for ‘segments’
coloc.abf.snpStats: no visible global function definition for
  ‘single.snp.tests’
coloc.abf.snpStats: no visible global function definition for
... 43 lines ...
  cor glm impute.snps integrate lm object optimize pchisq pf points
  polygon prcomp qnorm segments single.snp.tests snp.imputation var
  vcov
Consider adding
  importFrom("graphics", "abline", "arrows", "axis", "box", "points",
             "polygon", "segments")
  importFrom("stats", "as.formula", "coef", "coefficients", "cor", "glm",
             "integrate", "lm", "optimize", "pchisq", "pf", "prcomp",
             "qnorm", "var", "vcov")
  importFrom("utils", "combn")
to your NAMESPACE file.

colormap (0.1.3)

Maintainer: Bhaskar Karambelkar bhaskarvk@gmail.com
Bug reports: https://github.com/bhaskarvk/colormap/issues

0 errors | 0 warnings | 0 notes

colorplaner (0.1.3)

Maintainer: William Murphy william.murphy.rd@gmail.com
Bug reports: https://github.com/wmurphyrd/colorplaner/issues

0 errors | 0 warnings | 0 notes

CommT (0.1.1)

Maintainer: Michael Gruenstaeudl mi.gruenstaeudl@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
CommT.anova: no visible global function definition for ‘aov’
CommT.legendpos: no visible global function definition for ‘quantile’
CommT.plotcolors: no visible global function definition for ‘hcl’
Undefined global functions or variables:
  aov hcl quantile
Consider adding
  importFrom("grDevices", "hcl")
  importFrom("stats", "aov", "quantile")
to your NAMESPACE file.

complmrob (0.6.1)

Maintainer: David Kepplinger david.kepplinger@gmail.com

0 errors | 0 warnings | 0 notes

confidence (1.1-0)

Maintainer: Dennis J. J. Walvoort dennis.Walvoort@wur.nl

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
conf: no visible global function definition for ‘read.csv’
conf: no visible global function definition for ‘write.csv’
mya.conf_input : <anonymous>: no visible global function definition for
  ‘sd’
mya.conf_input : <anonymous>: no visible global function definition for
  ‘qt’
mya.conf_input : <anonymous>: no visible global function definition for
  ‘pt’
plot.mya: no visible global function definition for ‘dt’
plot.mya: no visible global function definition for ‘rgb’
write_html.conf_input: no visible global function definition for
  ‘browseURL’
Undefined global functions or variables:
  browseURL dt pt qt read.csv rgb sd write.csv
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("stats", "dt", "pt", "qt", "sd")
  importFrom("utils", "browseURL", "read.csv", "write.csv")
to your NAMESPACE file.

conformal (0.2)

Maintainer: Isidro Cortes isidrolauscher@gmail.com

0 errors | 0 warnings | 0 notes

Conigrave (0.1.0)

Maintainer: James Conigrave james.conigrave@gmail.com

0 errors | 0 warnings | 0 notes

contoureR (1.0.5)

Maintainer: Nicholas Hamilton n.hamilton@unsw.edu.au

0 errors | 0 warnings | 0 notes

cooccur (1.3)

Maintainer: Daniel M. Griffith griffith.dan@gmail.com

0 errors | 0 warnings | 0 notes

CopulaDTA (0.0.4)

Maintainer: Victoria N Nyaga victoria.nyaga@outlook.com

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 291-292 (CopulaDTA_Vignette.Rmd) 
Error: processing vignette 'CopulaDTA_Vignette.Rmd' failed with diagnostics:
index out of bounds ('unit' subsetting)
Execution halted

corkscrew (1.1)

Maintainer: Santhosh Sasanapuri santhosh458@gmail.com

0 errors | 0 warnings | 0 notes

corrr (0.2.1)

Maintainer: Simon Jackson drsimonjackson@gmail.com
Bug reports: https://github.com/drsimonj/corrr/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘corrr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: network_plot
> ### Title: Network plot of a correlation data frame
> ### Aliases: network_plot
> 
> ### ** Examples
> 
> x <- correlate(mtcars)
> network_plot(x)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

cosinor (1.1)

Maintainer: Michael Sachs sachsmc@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
cosinor.lm: no visible binding for global variable ‘na.omit’
cosinor.lm: no visible global function definition for ‘terms’
cosinor.lm: no visible global function definition for ‘as.formula’
cosinor.lm: no visible global function definition for ‘lm’
cosinor_analyzer: no visible binding for global variable ‘vitamind’
cosinor_analyzer : <anonymous>: no visible global function definition
  for ‘as.formula’
ggplot.cosinor.lm: no visible global function definition for ‘predict’
predict.cosinor.lm: no visible global function definition for ‘fitted’
... 7 lines ...
summary.cosinor.lm: no visible global function definition for ‘pnorm’
test_cosinor: no visible global function definition for ‘pchisq’
test_cosinor: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  as.formula fitted lm na.omit pchisq pnorm predict qnorm rbinom rnorm
  runif terms vcov vitamind
Consider adding
  importFrom("stats", "as.formula", "fitted", "lm", "na.omit", "pchisq",
             "pnorm", "predict", "qnorm", "rbinom", "rnorm", "runif",
             "terms", "vcov")
to your NAMESPACE file.

CosmoPhotoz (0.1)

Maintainer: Rafael S. de Souza rafael.2706@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
CosmoPhotoZestimator: no visible global function definition for
  ‘predict’
computeCombPCA: no visible global function definition for ‘prcomp’
computeDiagPhotoZ: no visible global function definition for ‘sd’
computeDiagPhotoZ: no visible global function definition for ‘median’
computeDiagPhotoZ: no visible global function definition for ‘mad’
glmPredictPhotoZ: no visible global function definition for ‘predict’
glmTrainPhotoZ: no visible global function definition for ‘glm’
glmTrainPhotoZ: no visible global function definition for ‘Gamma’
glmTrainPhotoZ: no visible global function definition for
  ‘inverse.gaussian’
plotDiagPhotoZ: no visible global function definition for ‘median’
plotDiagPhotoZ: no visible global function definition for ‘mad’
Undefined global functions or variables:
  Gamma glm inverse.gaussian mad median prcomp predict sd
Consider adding
  importFrom("stats", "Gamma", "glm", "inverse.gaussian", "mad",
             "median", "prcomp", "predict", "sd")
to your NAMESPACE file.

countytimezones (1.0.0)

Maintainer: Brooke Anderson brooke.anderson@colostate.edu
Bug reports: https://github.com/geanders/countytimezones/issues

0 errors | 0 warnings | 0 notes

countyweather (0.1.0)

Maintainer: Rachel Severson rachel.severson@colostate.edu

0 errors | 0 warnings | 0 notes

covmat (1.0)

Maintainer: Rohit Arora emailrohitarora@gmail.com

0 errors | 0 warnings | 0 notes

cowplot (0.7.0)

Maintainer: Claus O. Wilke wilke@austin.utexas.edu
Bug reports: https://github.com/wilkelab/cowplot/issues

0 errors | 0 warnings | 0 notes

cplm (0.7-4)

Maintainer: Yanwei (Wayne) Zhang actuary_zhang@hotmail.com

0 errors | 0 warnings | 0 notes

crawl (2.0.1)

Maintainer: Devin S. Johnson devin.johnson@noaa.gov

0 errors | 0 warnings | 0 notes

cricketr (0.0.13)

Maintainer: Tinniam V Ganesh tvganesh.85@gmail.com
Bug reports: https://github.com/tvganesh/cricketr/issues

0 errors | 0 warnings | 0 notes

crmPack (0.2.0)

Maintainer: Daniel Sabanes Bove sabanesd@roche.com

1 error | 0 warnings | 0 notes

checking whether package ‘crmPack’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/crmPack.Rcheck/00install.out’ for details.

Crossover (0.1-16)

Maintainer: Kornelius Rohmeyer rohmeyer@small-projects.de
Bug reports: https://github.com/kornl/Crossover/issues

1 error | 0 warnings | 0 notes

checking whether package ‘Crossover’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/Crossover.Rcheck/00install.out’ for details.

CRTgeeDR (1.2)

Maintainer: Melanie Prague mprague@hsph.harvard.edu

0 errors | 0 warnings | 0 notes

csp (0.1.0)

Maintainer: Eric Persson expersso5@gmail.com

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is 11.0Mb
  sub-directories of 1Mb or more:
    data  10.9Mb

cutoffR (1.0)

Maintainer: Lingbing Feng fenglb88@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
Cut: no visible global function definition for ‘cor’
MissSimulation: no visible global function definition for ‘rbinom’
cutoff: no visible global function definition for ‘cor’
Undefined global functions or variables:
  cor rbinom
Consider adding
  importFrom("stats", "cor", "rbinom")
to your NAMESPACE file.

cvxclustr (1.1.1)

Maintainer: Eric C. Chi ecchi1105@gmail.com

0 errors | 0 warnings | 2 notes

checking R code for possible problems ... NOTE
create_clustering_problem: no visible global function definition for
  ‘rnorm’
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.

checking line endings in Makefiles ... NOTE
Found the following Makefile(s) without a final LF:
  src/Makevars
Some ‘make’ programs ignore lines not ending in LF.

Cyclops (1.2.2)

Maintainer: Marc A. Suchard msuchard@ucla.edu
Bug reports: https://github.com/ohdsi/cyclops/issues

0 errors | 0 warnings | 0 notes

cystiSim (0.1.0)

Maintainer: Brecht Devleesschauwer brechtdv@gmail.com
Bug reports: https://github.com/brechtdv/cystiSim/issues

0 errors | 0 warnings | 0 notes

dae (2.7-20)

Maintainer: Chris Brien Chris.Brien@unisa.edu.au

0 errors | 0 warnings | 0 notes

dams (0.2)

Maintainer: Joseph Stachelek stachel2@msu.edu
Bug reports: http://www.github.com/jsta/dams/issues

0 errors | 0 warnings | 0 notes

darch (0.12.0)

Maintainer: Martin Drees mdrees@stud.fh-dortmund.de
Bug reports: https://github.com/maddin79/darch/issues

0 errors | 0 warnings | 2 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘gputools’

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘gputools’

darksky (1.0.0)

Maintainer: Bob Rudis bob@rud.is
Bug reports: https://github.com/hrbrmstr/darksky/issues

0 errors | 0 warnings | 0 notes

data.table (1.9.6)

Maintainer: Matt Dowle mattjdowle@gmail.com
Bug reports: https://github.com/Rdatatable/data.table/issues

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/tests.R’ failed.
Last 13 lines of output:
  Test 167.2 ran without errors but failed check that x equals y:
  > x = names(print(ggplot(DT) + geom_hex(aes(b, f)) + facet_wrap(~grp))) 
  [1] "data"   "layout" "plot"  
  > y = c("data", "panel", "plot") 
  [1] "data"  "panel" "plot" 
  Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
  Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
  Tests 1441-1444 not run. If required install the 'fr_FR.utf8' locale.
  
  Error in eval(expr, envir, enclos) : 
    2 errors out of 4428 (lastID=1557.4, endian=little, sizeof(long double)==16) in inst/tests/tests.Rraw on Mon Nov  7 11:51:45 2016. Search tests.Rraw for test numbers: 167, 167.2.
  Calls: test.data.table -> sys.source -> eval -> eval
  Execution halted

DataExplorer (0.2.6)

Maintainer: Boxuan Cui boxuancui@gmail.com
Bug reports: https://github.com/boxuancui/DataExplorer/issues

0 errors | 0 warnings | 0 notes

dcmr (1.0)

Maintainer: Diane Losardo dlosardo@amplify.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
DrawAlphas: no visible global function definition for ‘rmultinom’
DrawClasses: no visible global function definition for ‘runif’
GetGammaNames: no visible global function definition for ‘combn’
GetLambdaNamesForItem: no visible global function definition for
  ‘combn’
SampleParameterEstimates: no visible global function definition for
  ‘rnorm’
plot,attribute.class-missing: no visible binding for global variable
  ‘attr.number’
... 6 lines ...
  variable ‘mean.attr.profile’
summary,attribute.class: no visible binding for global variable ‘value’
summary,attribute.profile.class: no visible binding for global variable
  ‘max.class’
Undefined global functions or variables:
  attr.number attr.profile.number combn max.class mean.attr
  mean.attr.profile rmultinom rnorm runif value
Consider adding
  importFrom("stats", "rmultinom", "rnorm", "runif")
  importFrom("utils", "combn")
to your NAMESPACE file.

ddpcr (1.5)

Maintainer: Dean Attali daattali@gmail.com
Bug reports: https://github.com/daattali/ddpcr/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
)
Parsed with column specification:
cols(
  `Assay1 Amplitude` = col_double(),
  `Assay2 Amplitude` = col_double(),
  Cluster = col_integer()
)
... 8 lines ...
cols(
  `Assay1 Amplitude` = col_double(),
  `Assay2 Amplitude` = col_double(),
  Cluster = col_integer()
)
DONE (0 seconds)
Initializing plate of type `custom_thresholds`... DONE (0 seconds)
Quitting from lines 442-443 (overview.Rmd) 
Error: processing vignette 'overview.Rmd' failed with diagnostics:
Aesthetics must be either length 1 or the same as the data (4): x, y, size, hjust, vjust, fontface
Execution halted

Deducer (0.7-9)

Maintainer: Ian Fellows ian@fellstat.com

1 error | 0 warnings | 0 notes

checking whether package ‘Deducer’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/Deducer.Rcheck/00install.out’ for details.

DeLorean (1.2.4)

Maintainer: John Reid john.reid@mrc-bsu.cam.ac.uk

0 errors | 0 warnings | 0 notes

demi (1.1.2)

Maintainer: Sten Ilmjarv sten.ilmjarv@gmail.com

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘affxparser’ ‘affy’ ‘oligo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

dendextend (1.3.0)

Maintainer: Tal Galili tal.galili@gmail.com
Bug reports: https://github.com/talgalili/dendextend/issues

0 errors | 0 warnings | 2 notes

checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  ‘labeltodendro’ ‘dendroextras’

checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘dendroextras’, ‘moduleColor’

DengueRT (1.0.1)

Maintainer: Carlos Sebrango sebrango@uniss.edu.cu

0 errors | 0 warnings | 0 notes

DepthProc (1.0.7)

Maintainer: Zygmunt Zawadzki zawadzkizygmunt@gmail.com

0 errors | 0 warnings | 0 notes

DescribeDisplay (0.2.5)

Maintainer: Di Cook dicook@monash.edu
Bug reports: https://github.com/ggobi/DescribeDisplay/issues

0 errors | 0 warnings | 0 notes

detzrcr (0.1.2)

Maintainer: Magnus Kristoffersen magnus.kristoffersen@geo.uio.no

0 errors | 0 warnings | 0 notes

dfexplore (0.2.1)

Maintainer: Joris Muller joris.muller@etu.unistra.fr

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
simulate_dataframe : generate_dumb_answer: no visible global function
  definition for ‘rbinom’
simulate_dataframe : generate_dumb_answer: no visible global function
  definition for ‘rnorm’
simulate_dataframe : generate_initial: no visible global function
  definition for ‘rbinom’
simulate_dataframe: no visible binding for global variable ‘randu’
simulate_dataframe: no visible global function definition for ‘rbinom’
simulate_dataframe: no visible global function definition for ‘rnorm’
simulate_dataframe: no visible global function definition for ‘rpois’
simulate_dataframe : add_NAs: no visible global function definition for
  ‘rbinom’
Undefined global functions or variables:
  randu rbinom rnorm rpois
Consider adding
  importFrom("datasets", "randu")
  importFrom("stats", "rbinom", "rnorm", "rpois")
to your NAMESPACE file.

DFIT (1.0-2)

Maintainer: Victor H. Cervantes vhcervantesb@unal.edu.co

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
Ase1pl: no visible global function definition for ‘integrate’
Ase2pl: no visible global function definition for ‘integrate’
Ase3pl: no visible global function definition for ‘integrate’
Ase3pl: no visible global function definition for ‘qnorm’
Calculate1plProb: no visible global function definition for ‘plogis’
Calculate2plProb: no visible global function definition for ‘plogis’
Calculate3plProb: no visible global function definition for ‘plogis’
CalculateGrmExp: no visible global function definition for ‘plogis’
Cdif: no visible global function definition for ‘integrate’
... 6 lines ...
PlotNcdif: no visible global function definition for ‘density’
ProductProbabilities: no visible global function definition for
  ‘plogis’
SignedArea: no visible global function definition for ‘integrate’
UnsignedArea: no visible global function definition for ‘integrate’
Undefined global functions or variables:
  density integrate plogis qnorm quantile
Consider adding
  importFrom("stats", "density", "integrate", "plogis", "qnorm",
             "quantile")
to your NAMESPACE file.

dfpk (1.0)

Maintainer: Artemis Toumazi artemis.toumazi@inserm.fr
Bug reports: http://github.com/artemis-toumazi/dfpk/issues

0 errors | 0 warnings | 0 notes

dggridR (0.1.11)

Maintainer: Richard Barnes rbarnes@umn.edu
Bug reports: https://github.com/r-barnes/dggridR/

0 errors | 0 warnings | 0 notes

diagis (0.1.0)

Maintainer: Jouni Helske jouni.helske@jyu.fi

0 errors | 0 warnings | 0 notes

DiallelAnalysisR (0.1.1)

Maintainer: Muhammad Yaseen myaseen208@gmail.com

0 errors | 0 warnings | 0 notes

dielectric (0.2.3)

Maintainer: Baptiste Auguie baptiste.auguie@gmail.com

0 errors | 0 warnings | 3 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.

checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
L2eV: no visible binding for global variable ‘constants’
L2w: no visible binding for global variable ‘constants’
dielectric: no visible global function definition for ‘new’
dielectric2plot: no visible global function definition for ‘reshape’
eV2L: no visible binding for global variable ‘constants’
t2eV: no visible binding for global variable ‘constants’
Undefined global functions or variables:
  constants new reshape
Consider adding
  importFrom("methods", "new")
  importFrom("stats", "reshape")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

diffeR (0.0-4)

Maintainer: Al� Santacruz amsantac@unal.edu.co

0 errors | 0 warnings | 0 notes

difNLR (0.1.0)

Maintainer: Adela Drabinova adela.drabinova@gmail.com

0 errors | 0 warnings | 0 notes

directlabels (2015.12.16)

Maintainer: Toby Dylan Hocking tdhock5@gmail.com

0 errors | 0 warnings | 0 notes

disclapmix (1.6.2)

Maintainer: Mikkel Meyer Andersen mikl@math.aau.dk

0 errors | 0 warnings | 0 notes

diveRsity (1.9.89)

Maintainer: Kevin Keenan kkeenan02@qub.ac.uk

0 errors | 0 warnings | 1 note

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

DiversityOccupancy (1.0.5)

Maintainer: Derek Corcoran derek.corcoran.barrios@gmail.com

1 error | 0 warnings | 0 notes

checking whether package ‘DiversityOccupancy’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/DiversityOccupancy.Rcheck/00install.out’ for details.

dlstats (0.0.9)

Maintainer: Guangchuang Yu guangchuangyu@gmail.com
Bug reports: https://github.com/GuangchuangYu/dlstats/issues

0 errors | 0 warnings | 0 notes

dMod (0.3.2)

Maintainer: Daniel Kaschek daniel.kaschek@physik.uni-freiburg.de

0 errors | 0 warnings | 0 notes

doBy (4.5-15)

Maintainer: S�ren H�jsgaard sorenh@math.aau.dk

0 errors | 0 warnings | 0 notes

DoTC (0.2)

Maintainer: Holger Sennhenn-Reulen hsennhenn-reulen@dpz.eu

0 errors | 0 warnings | 0 notes

dotwhisker (0.2.2)

Maintainer: Yue Hu yue-hu-1@uiowa.edu
Bug reports: https://github.com/fsolt/dotwhisker/issues

0 errors | 0 warnings | 0 notes

dpcR (0.3)

Maintainer: Michal Burdukiewicz michalburdukiewicz@gmail.com
Bug reports: https://github.com/michbur/dpcR/issues

0 errors | 0 warnings | 0 notes

dplyr (0.5.0)

Maintainer: Hadley Wickham hadley@rstudio.com
Bug reports: https://github.com/hadley/dplyr/issues

0 errors | 0 warnings | 1 note

checking dependencies in R code ... NOTE
Missing or unexported object: ‘RSQLite::rsqliteVersion’

DrBats (0.1.4)

Maintainer: Gabrielle Weinrott gabrielle.weinrott@supagro.inra.fr

0 errors | 0 warnings | 0 notes

drLumi (0.1.2)

Maintainer: Hector Sanz hector.sanz@isglobal.org

0 errors | 0 warnings | 0 notes

dslice (1.1.5)

Maintainer: Chao Ye yechao1009@gmail.com

0 errors | 0 warnings | 0 notes

dsm (2.2.13)

Maintainer: Laura Marshall lhm@st-andrews.ac.uk
Bug reports: https://github.com/DistanceDevelopment/dsm/issues

0 errors | 0 warnings | 0 notes

DstarM (0.1.0)

Maintainer: Don van den Bergh donvdbergh@hotmail.com

0 errors | 0 warnings | 0 notes

DTR (1.7)

Maintainer: Xinyu Tang xtang@uams.edu

0 errors | 0 warnings | 0 notes

DTRlearn (1.2)

Maintainer: Ying Liu yl2802@cumc.columbia.edu

0 errors | 0 warnings | 0 notes

dtwclust (2.3.0)

Maintainer: Alexis Sarda alexis.sarda@gmail.com
Bug reports: https://github.com/asardaes/dtwclust/issues

0 errors | 0 warnings | 0 notes

dtwSat (0.2.1)

Maintainer: Victor Maus vwmaus1@gmail.com

0 errors | 0 warnings | 0 notes

DVHmetrics (0.3.6)

Maintainer: Daniel Wollschlaeger wollschlaeger@uni-mainz.de

0 errors | 0 warnings | 0 notes

DynNom (3.0.1)

Maintainer: Amirhossein Jalali a.jalali2@nuigalway.ie

1 error | 0 warnings | 0 notes

checking whether package ‘DynNom’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/DynNom.Rcheck/00install.out’ for details.

dynr (0.1.7)

Maintainer: Lu Ou lzo114@psu.edu

1 error | 0 warnings | 0 notes

checking whether package ‘dynr’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/dynr.Rcheck/00install.out’ for details.

dynsim (1.2.1)

Maintainer: Christopher Gandrud christopher.gandrud@gmail.com
Bug reports: https://github.com/christophergandrud/dynsim/issues

0 errors | 0 warnings | 0 notes

dynsurv (0.3-3)

Maintainer: Wenjie Wang wenjie.2.wang@uconn.edu
Bug reports: https://github.com/wenjie2wang/dynsurv/issues

0 errors | 0 warnings | 0 notes

earlywarnings (1.0.59)

Maintainer: Vasilis Dakos vasilis.dakos@gmail.com

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking R code for possible problems ... NOTE
PlotPotential: no visible global function definition for ‘aes’
PlotPotential: no visible global function definition for ‘geom_tile’
PlotPotential: no visible global function definition for
  ‘scale_fill_gradient’
PlotPotential: no visible global function definition for ‘stat_contour’
PlotPotential: no visible global function definition for ‘xlab’
PlotPotential: no visible global function definition for ‘ylab’
PlotPotential: no visible global function definition for ‘labs’
bdstest_ews: no visible global function definition for ‘dev.new’
... 50 lines ...
surrogates_ews: no visible global function definition for ‘mtext’
Undefined global functions or variables:
  abline aes contour dev.new geom_tile grid hist labs layout legend
  lines mtext par plot points rainbow scale_fill_gradient stat_contour
  text title topo.colors xlab ylab
Consider adding
  importFrom("grDevices", "dev.new", "rainbow", "topo.colors")
  importFrom("graphics", "abline", "contour", "grid", "hist", "layout",
             "legend", "lines", "mtext", "par", "plot", "points", "text",
             "title")
to your NAMESPACE file.

earthtones (0.1.0)

Maintainer: Will Cornwell wcornwell@gmail.com

0 errors | 0 warnings | 0 notes

EasyHTMLReport (0.1.1)

Maintainer: Yohei Sato yohei0511@gmail.com

0 errors | 0 warnings | 3 notes

checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘easy_html_report_tmp_1376284934.59207.tsv’
  ‘easy_html_report_tmp_1376284935.5951.tsv’
  ‘easy_html_report_tmp_1376284936.59848.tsv’

checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘base64enc’ ‘knitr’ ‘markdown’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
.file_attachment: no visible global function definition for
  ‘base64encode’
.plot_attachment: no visible global function definition for ‘dev.off’
.update_list: no visible global function definition for ‘modifyList’
easyHtmlReport: no visible global function definition for ‘knit’
easyHtmlReport: no visible global function definition for
  ‘markdownToHTML’
mime_part.data.frame: no visible global function definition for
  ‘write.table’
mime_part.ggplot: no visible binding for global variable ‘pdf’
mime_part.matrix: no visible global function definition for
  ‘write.table’
mime_part.trellis: no visible binding for global variable ‘pdf’
simpleHtmlReport : <anonymous>: no visible global function definition
  for ‘write.table’
Undefined global functions or variables:
  base64encode dev.off knit markdownToHTML modifyList pdf write.table
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("utils", "modifyList", "write.table")
to your NAMESPACE file.

ecb (0.2)

Maintainer: Eric Persson expersso5@gmail.com

1 error | 1 warning | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  5: check_status(req)
  6: stop("HTTP failure: ", req$status_code, "\n", httr::content(req, "text"))
  
  testthat results ================================================================
  OK: 2 SKIPPED: 0 FAILED: 5
  1. Error: get_dimensions returns a list of data frames (@tests.R#16) 
  2. Failure: malformed series key returns 404 error (@tests.R#25) 
  3. Failure: malformed series key returns 404 error (@tests.R#26) 
  4. Failure: malformed series key returns 404 error (@tests.R#27) 
  5. Error: get_description returns a character vector (@tests.R#32) 
  
  Error: testthat unit tests failed
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 114-116 (ecb_sdw.Rmd) 
Error: processing vignette 'ecb_sdw.Rmd' failed with diagnostics:
HTTP failure: 500
<HTML><HEAD>
<TITLE>Internal Server Error</TITLE>
</HEAD><BODY>
<H1>Internal Server Error - Read</H1>
The server encountered an internal error or misconfiguration and was unable to
complete your request.<P>
Reference&#32;&#35;3&#46;f0fd717&#46;1478542055&#46;756990
</BODY></HTML>
Execution halted

ecoengine (1.10.0)

Maintainer: Karthik Ram karthik.ram@gmail.com
Bug reports: https://github.com/ropensci/ecoengine/issues

0 errors | 0 warnings | 0 notes

EcoGenetics (1.2.0-3)

Maintainer: Leandro Roser learoser@gmail.com

0 errors | 0 warnings | 0 notes

ecr (1.0.1)

Maintainer: Jakob Bossek j.bossek@gmail.com
Bug reports: https://github.com/jakobbossek/ecr/issues

0 errors | 0 warnings | 0 notes

edarf (1.0.0)

Maintainer: Zachary M. Jones zmj@zmjones.com
Bug reports: https://github.com/zmjones/edarf

0 errors | 0 warnings | 0 notes

edeaR (0.4.4)

Maintainer: Gert Janssenswillen gert.janssenswillen@uhasselt.be

0 errors | 0 warnings | 0 notes

edfReader (1.1.1)

Maintainer: Jan Vis jan@visconsultancy.eu

0 errors | 0 warnings | 0 notes

edgar (1.0.6)

Maintainer: Gunratan Lonare lonare.gunratan@gmail.com

0 errors | 0 warnings | 0 notes

eechidna (0.1)

Maintainer: Ben Marwick benmarwick@gmail.com

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘eechidna-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hexDat
> ### Title: Electorate hexagon data in a tidy form
> ### Aliases: hexDat
> ### Keywords: datasets
> 
... 18 lines ...

    layout

> p <- ggplot(hexDat, aes(xcent, ycent, text = Electorate)) + 
+   geom_hex(stat = "identity") + 
+   lims(x=c(-80, 8), y=c(-40, 50))
> ggplotly(p, tooltip = "text")
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Calls: ggplotly -> ggplotly.ggplot -> gg2list
Execution halted

EEM (1.1.1)

Maintainer: Vipavee Trivittayasil vipavee.tri@gmail.com

0 errors | 0 warnings | 0 notes

eemR (0.1.4)

Maintainer: Philippe Massicotte pm@bios.au.dk
Bug reports: https://github.com/PMassicotte/eemR/issues

0 errors | 0 warnings | 0 notes

eeptools (1.0.0)

Maintainer: Jared E. Knowles jknowles@gmail.com

0 errors | 0 warnings | 0 notes

EFDR (0.1.1)

Maintainer: Andrew Zammit-Mangion andrewzm@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
.gdf : find_loss: no visible global function definition for ‘rnorm’
.p.values : <anonymous>: no visible global function definition for
  ‘pnorm’
.relist.dwt: no visible global function definition for ‘relist’
.relist.dwt: no visible global function definition for ‘as’
.std.wav.coeff : <anonymous>: no visible global function definition for
  ‘mad’
regrid: no visible global function definition for ‘predict’
regrid: no visible global function definition for ‘var’
regrid: no visible global function definition for ‘medpolish’
Undefined global functions or variables:
  as mad medpolish pnorm predict relist rnorm var
Consider adding
  importFrom("methods", "as")
  importFrom("stats", "mad", "medpolish", "pnorm", "predict", "rnorm",
             "var")
  importFrom("utils", "relist")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

EffectLiteR (0.4-2)

Maintainer: Axel Mayer amayer2010@gmail.com

0 errors | 0 warnings | 0 notes

ega (1.0.1)

Maintainer: Daniel Schmolze ega@schmolze.com

0 errors | 0 warnings | 0 notes

egcm (1.0.8)

Maintainer: Matthew Clegg matthewcleggphd@gmail.com

0 errors | 0 warnings | 0 notes

eiCompare (1.7)

Maintainer: Loren Collingwood loren.collingwood@ucr.edu

0 errors | 0 warnings | 0 notes

emil (2.2.6)

Maintainer: Christofer Backlin emil@christofer.backlin.se
Bug reports: https://github.com/Molmed/emil/issues

0 errors | 0 warnings | 0 notes

emojifont (0.3.4)

Maintainer: Guangchuang Yu guangchuangyu@gmail.com
Bug reports: https://github.com/GuangchuangYu/emojifont/issues

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 119-144 (emojifont.Rmd) 
Error: processing vignette 'emojifont.Rmd' failed with diagnostics:
there is no package called 'ggtree'
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘ggtree’

EmpiricalCalibration (1.2.0)

Maintainer: Martijn Schuemie schuemie@ohdsi.org
Bug reports: https://github.com/OHDSI/EmpiricalCalibration/issues

0 errors | 0 warnings | 0 notes

emuR (0.1.9)

Maintainer: Raphael Winkelmann raphael@phonetik.uni-muenchen.de
Bug reports: https://github.com/IPS-LMU/emuR/issues

0 errors | 0 warnings | 0 notes

enigma (0.2.0)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: https://github.com/ropengov/enigma/issues

0 errors | 0 warnings | 0 notes

enpls (5.0)

Maintainer: Nan Xiao me@nanx.me
Bug reports: https://github.com/road2stat/enpls/issues

0 errors | 0 warnings | 0 notes

EpiDynamics (0.3.0)

Maintainer: Oswaldo Santos Baquero oswaldosant@gmail.com

0 errors | 0 warnings | 0 notes

episensr (0.7.2)

Maintainer: Denis Haine denis.haine@gmail.com
Bug reports: https://github.com/dhaine/episensr/issues

0 errors | 0 warnings | 0 notes

episheet (0.2.0)

Maintainer: James Black james@epijim.uk
Bug reports: https://github.com/epijim/episheet/issues

0 errors | 0 warnings | 0 notes

ESGtoolkit (0.1)

Maintainer: Thierry Moudiki thierry.moudiki@gmail.com

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.

checking R code for possible problems ... NOTE
bands.add: no visible global function definition for ‘polygon’
bands.add: no visible global function definition for ‘lines’
bands.plot: no visible global function definition for ‘plot’
bands.plot: no visible global function definition for ‘polygon’
bands.plot: no visible global function definition for ‘lines’
bands.plot: no visible global function definition for ‘abline’
esgcortest: no visible global function definition for ‘deltat’
esgcortest: no visible global function definition for ‘ts’
esgcortest : <anonymous>: no visible global function definition for
... 66 lines ...
  element_blank end geom_density geom_point is.ts lines matplot par
  plot points polygon pt qnorm qt quantile scale_color_manual
  scale_fill_manual sd start t.test theme time ts tsp window xlab ylab
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("graphics", "abline", "lines", "matplot", "par", "plot",
             "points", "polygon")
  importFrom("stats", "cor", "cor.test", "deltat", "end", "is.ts", "pt",
             "qnorm", "qt", "quantile", "sd", "start", "t.test", "time",
             "ts", "tsp", "window")
to your NAMESPACE file.

etl (0.3.3.1)

Maintainer: Ben Baumer ben.baumer@gmail.com
Bug reports: https://github.com/beanumber/etl/issues

0 errors | 0 warnings | 0 notes

etm (0.6-2)

Maintainer: Arthur Allignol arthur.allignol@uni-ulm.de

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking R code for possible problems ... NOTE
avec.cov: no visible global function definition for ‘qnorm’
closPseudo: no visible global function definition for ‘terms’
etmCIF: no visible global function definition for ‘model.extract’
lines.etm: no visible global function definition for ‘lines’
phiPseudo: no visible global function definition for ‘terms’
plot.clos.etm: no visible global function definition for ‘par’
plot.clos.etm: no visible global function definition for ‘split.screen’
plot.clos.etm: no visible global function definition for ‘screen’
plot.clos.etm: no visible global function definition for ‘plot’
... 10 lines ...
print.summary.etm: no visible global function definition for ‘quantile’
print.summary.etmCIF: no visible global function definition for
  ‘quantile’
Undefined global functions or variables:
  axis box close.screen lines model.extract par plot qnorm quantile
  screen segments split.screen terms
Consider adding
  importFrom("graphics", "axis", "box", "close.screen", "lines", "par",
             "plot", "screen", "segments", "split.screen")
  importFrom("stats", "model.extract", "qnorm", "quantile", "terms")
to your NAMESPACE file.

eurostat (2.2.1)

Maintainer: Lahti Leo louhos@googlegroups.com
Bug reports: https://github.com/ropengov/eurostat/issues

0 errors | 0 warnings | 0 notes

evaluate (0.10)

Maintainer: Yihui Xie xie@yihui.name
Bug reports: https://github.com/hadley/evaluate/issues

0 errors | 0 warnings | 0 notes

evolqg (0.2-4)

Maintainer: Diogo Melo diogro@usp.br
Bug reports: https://github.com/lem-usp/evolqg/issues

0 errors | 0 warnings | 0 notes

Evomorph (0.9)

Maintainer: Juan Manuel Cabrera juanmanuelcabrera1@gmail.com

0 errors | 0 warnings | 0 notes

explor (0.2.1)

Maintainer: Julien Barnier julien.barnier@ens-lyon.fr
Bug reports: https://github.com/juba/explor/issues

0 errors | 0 warnings | 0 notes

exploreR (0.1)

Maintainer: Michael Coates azhain@gmail.com

0 errors | 0 warnings | 0 notes

exreport (0.4.1)

Maintainer: Jacinto Arias jacinto.arias@uclm.es

0 errors | 0 warnings | 0 notes

ExtDist (0.6-3)

Maintainer: A. Jonathan R. Godfrey a.j.godfrey@massey.ac.nz

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
DistSelCriteria: no visible binding for global variable ‘getS3method’
bestDist: no visible global function definition for ‘getS3method’
compareDist: no visible global function definition for ‘hist’
compareDist: no visible global function definition for ‘curve’
dBeta: no visible global function definition for ‘dbeta’
dBeta_ab: no visible global function definition for ‘dbeta’
dJohnsonSU: no visible global function definition for ‘dnorm’
dLogistic: no visible global function definition for ‘dlogis’
dNormal: no visible global function definition for ‘dnorm’
... 46 lines ...
  abline capture.output coef cov2cor curve dbeta dlogis dnorm dunif
  getS3method hist median par pbeta plogis plot pnorm punif qbeta
  qlogis qnorm qunif rbeta rlogis rnorm runif sd uniroot var
Consider adding
  importFrom("graphics", "abline", "curve", "hist", "par", "plot")
  importFrom("stats", "coef", "cov2cor", "dbeta", "dlogis", "dnorm",
             "dunif", "median", "pbeta", "plogis", "pnorm", "punif",
             "qbeta", "qlogis", "qnorm", "qunif", "rbeta", "rlogis",
             "rnorm", "runif", "sd", "uniroot", "var")
  importFrom("utils", "capture.output", "getS3method")
to your NAMESPACE file.

extracat (1.7-4)

Maintainer: Alexander Pilhoefer alexander.pilhoefer@gmail.com

0 errors | 0 warnings | 0 notes

eyelinker (0.1)

Maintainer: Simon Barthelme simon.barthelme@gipsa-lab.fr

0 errors | 0 warnings | 0 notes

eyetrackingR (0.1.6)

Maintainer: Jacob Dink jacobwdink@gmail.com
Bug reports: https://github.com/jwdink/eyetrackingR/issues

0 errors | 0 warnings | 0 notes

ez (4.4-0)

Maintainer: Michael A. Lawrence mike.lwrnc@gmail.com

0 errors | 0 warnings | 0 notes

ezsim (0.5.5)

Maintainer: TszKin Julian Chan ctszkin@gmail.com
Bug reports: TszKin Julian Chan ctszkin@gmail.com

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking R code for possible problems ... NOTE
createFormula: no visible global function definition for ‘tail’
createFormula: no visible global function definition for ‘head’
createFormula: no visible global function definition for ‘as.formula’
ezsim: no visible global function definition for ‘runif’
plot.ezsim: no visible global function definition for ‘quantile’
plot.ezsim: no visible global function definition for ‘head’
plot.ezsim: no visible global function definition for ‘tail’
plot.ezsim: no visible global function definition for ‘plot’
plot.ezsim: no visible binding for global variable ‘dnorm’
... 8 lines ...
plot.summary.ezsim: no visible global function definition for ‘dev.off’
plot.summary.ezsim : <anonymous>: no visible global function definition
  for ‘dev.new’
Undefined global functions or variables:
  as.formula dev.new dev.off dnorm head pdf plot quantile runif tail
Consider adding
  importFrom("grDevices", "dev.new", "dev.off", "pdf")
  importFrom("graphics", "plot")
  importFrom("stats", "as.formula", "dnorm", "quantile", "runif")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.

factoextra (1.0.3)

Maintainer: Alboukadel Kassambara alboukadel.kassambara@gmail.com
Bug reports: https://github.com/kassambara/factoextra/issues

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘factoextra-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fviz_ca
> ### Title: Visualize Correspondence Analysis
> ### Aliases: fviz_ca fviz_ca_biplot fviz_ca_col fviz_ca_row
> 
> ### ** Examples
... 44 lines ...
> 
> # Change gradient color
> # Use repel = TRUE to avoid overplotting (slow if many points)
> fviz_ca_row(res.ca, col.row = "cos2", repel = TRUE) + 
+       scale_color_gradient2(low = "white", mid = "#2E9FDF", 
+       high = "#FC4E07", midpoint = 0.5, space = "Lab")+
+ theme_minimal()
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted
** found \donttest examples: check also with --run-donttest

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘NbClust’

FAOSTAT (2.0)

Maintainer: Filippo Gheri filippo.gheri@fao.org

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
Aggregation : foo: no visible global function definition for
  ‘weighted.mean’
Aggregation: no visible global function definition for ‘txtProgressBar’
Aggregation: no visible global function definition for
  ‘setTxtProgressBar’
constructSYB: no visible global function definition for ‘str’
fillCountryCode: no visible global function definition for ‘na.omit’
getFAO: no visible global function definition for ‘read.csv’
getWDImetaData: no visible global function definition for ‘write.csv’
getWDItoSYB: no visible global function definition for ‘na.omit’
lsgr: no visible global function definition for ‘na.omit’
lsgr: no visible global function definition for ‘coef’
lsgr: no visible global function definition for ‘lm’
Undefined global functions or variables:
  coef lm na.omit read.csv setTxtProgressBar str txtProgressBar
  weighted.mean write.csv
Consider adding
  importFrom("stats", "coef", "lm", "na.omit", "weighted.mean")
  importFrom("utils", "read.csv", "setTxtProgressBar", "str",
             "txtProgressBar", "write.csv")
to your NAMESPACE file.

fbroc (0.4.0)

Maintainer: Erik Peter jerikpeter@googlemail.com
Bug reports: http://github.com/erikpeter/fbroc/issues

0 errors | 0 warnings | 0 notes

fermicatsR (1.4)

Maintainer: Pablo Saz Parkinson sazpark2@gmail.com

0 errors | 0 warnings | 0 notes

FField (0.1.0)

Maintainer: Grigori Kapoustin gregk@alphabetaworks.com

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘ggplot2’ ‘gridExtra’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking R code for possible problems ... NOTE
FFieldPtRepDemo: no visible global function definition for ‘ggplot’
FFieldPtRepDemo: no visible binding for global variable ‘mtcars’
FFieldPtRepDemo: no visible global function definition for ‘aes’
FFieldPtRepDemo: no visible binding for global variable ‘mpg’
FFieldPtRepDemo: no visible global function definition for ‘geom_point’
FFieldPtRepDemo: no visible global function definition for ‘geom_text’
FFieldPtRepDemo: no visible global function definition for ‘ggtitle’
FFieldPtRepDemo: no visible global function definition for
  ‘geom_segment’
FFieldPtRepDemo: no visible global function definition for
  ‘grid.arrange’
Undefined global functions or variables:
  aes geom_point geom_segment geom_text ggplot ggtitle grid.arrange mpg
  mtcars
Consider adding
  importFrom("datasets", "mtcars")
to your NAMESPACE file.

Fgmutils (0.9.4)

Maintainer: Clayton Vieira Fraga Filho forestgrowthsoftware@gmail.com

1 error | 0 warnings | 0 notes

checking whether package ‘Fgmutils’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/Fgmutils.Rcheck/00install.out’ for details.

fheatmap (1.0.1)

Maintainer: Sivasish Sindirisentisci@gmail.com

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘fheatmap-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name:  Column Annotations 
> ### Title: Annotations of columns in "fheatmap_data"
> ### Aliases: ' annotation_col '
> ### Keywords: annotation_col
> 
> ### ** Examples
> 
> data(annotation_col)
> fheatmap(fheatmap_data,annotation_col=annotation_col)
Error in theme(panel.grid.major = element_blank(), panel.grid.minor = element_blank(),  : 
  formal argument "plot.margin" matched by multiple actual arguments
Calls: fheatmap -> draw_tree -> theme_blank -> theme
Execution halted

checking R code for possible problems ... NOTE
theme_blank: possible error in theme(panel.grid.major =
  element_blank(), panel.grid.minor = element_blank(), panel.background
  = element_blank(), axis.line = element_blank(), axis.ticks =
  element_blank(), axis.text = element_blank(), panel.grid =
  element_blank(), panel.border = element_blank(), plot.margin =
  rep(unit(0, "null"), 4), panel.margin = unit(0, "null"), plot.margin
  = rep(unit(0, "null"), 4), legend.position = "none"): formal argument
  "plot.margin" matched by multiple actual arguments

FinCal (0.6.3)

Maintainer: Felix Yanhui Fan nolanfyh@gmail.com

0 errors | 0 warnings | 0 notes

findviews (0.1.2)

Maintainer: Thibault Sellam thibault.sellam@cwi.nl

0 errors | 0 warnings | 0 notes

fishmove (0.3-3)

Maintainer: Johannes Radinger jradinger@igb-berlin.de

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
fishmove : coefs: no visible global function definition for ‘coef’
fishmove : coefs: no visible global function definition for ‘pf’
fishmove: no visible global function definition for ‘lm’
fishmove: no visible global function definition for ‘predict.lm’
fishmove.estimate: no visible global function definition for ‘quantile’
fishmove.estimate : ddoublenorm: no visible global function definition
  for ‘dnorm’
fishmove.query: no visible global function definition for ‘hasArg’
fishmove.query : f: no visible global function definition for ‘pnorm’
fishmove.query: no visible global function definition for ‘uniroot’
pdk: no visible global function definition for ‘hasArg’
pdk : eq: no visible global function definition for ‘dnorm’
Undefined global functions or variables:
  coef dnorm hasArg lm pf pnorm predict.lm quantile uniroot
Consider adding
  importFrom("methods", "hasArg")
  importFrom("stats", "coef", "dnorm", "lm", "pf", "pnorm", "predict.lm",
             "quantile", "uniroot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

fitbitScraper (0.1.7)

Maintainer: Cory Nissen corynissen@gmail.com

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 29-40 (fitbitScraper-examples.Rmd) 
Error: processing vignette 'fitbitScraper-examples.Rmd' failed with diagnostics:
Value for option cookie (10022) must be length-1 string
Execution halted

fitcoach (1.0)

Maintainer: Niraj Juneja njuneja@gmail.com

0 errors | 0 warnings | 0 notes

flowr (0.9.10)

Maintainer: Sahil Seth me@sahilseth.com
Bug reports: https://github.com/sahilseth/flowr/issues

0 errors | 0 warnings | 0 notes

forcats (0.1.1)

Maintainer: Hadley Wickham hadley@rstudio.com
Bug reports: https://github.com/hadley/forcats/issues

0 errors | 0 warnings | 0 notes

forecast (7.3)

Maintainer: Rob Hyndman Rob.Hyndman@monash.edu
Bug reports: https://github.com/robjhyndman/forecast/issues

0 errors | 0 warnings | 0 notes

forestmodel (0.4.0)

Maintainer: Nick Kennedy r@nick-kennedy.com

0 errors | 0 warnings | 0 notes

fractional (0.1.3)

Maintainer: Bill Venables bill.venables@gmail.com

0 errors | 0 warnings | 0 notes

frailtySurv (1.2.2.1)

Maintainer: John V. Monaco vincent@vmonaco.com
Bug reports: https://github.com/vmonaco/frailtySurv/issues

0 errors | 0 warnings | 0 notes

FREddyPro (1.0)

Maintainer: Georgios Xenakis georgios.xenakis@forestry.gsi.gov.uk

0 errors | 0 warnings | 0 notes

freqparcoord (1.0.1)

Maintainer: Norm Matloff normmatloff@gmail.com

0 errors | 0 warnings | 0 notes

FreqProf (0.0.1)

Maintainer: Ronald E. Robertson rrobertson@aibrt.org
Bug reports: https://github.com/AIBRT/FreqProf/issues

0 errors | 0 warnings | 0 notes

freqweights (1.0.2)

Maintainer: Emilio Torres-Manzanera torres@uniovi.es

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
.corfreq: no visible global function definition for ‘complete.cases’
.covfreq: no visible global function definition for ‘complete.cases’
.hclustvfreq: no visible global function definition for
  ‘complete.cases’
.quantilefreq : <anonymous>: no visible global function definition for
  ‘approx’
coef.biglmfreq: no visible global function definition for ‘coef’
predict.biglmfreq: no visible global function definition for ‘predict’
predict.lmfreq: no visible global function definition for ‘predict’
summary.lmfreq: no visible global function definition for ‘coef’
summary.lmfreq: no visible global function definition for ‘pt’
summary.lmfreq: no visible global function definition for ‘AIC’
update.biglmfreq: no visible global function definition for ‘update’
Undefined global functions or variables:
  AIC approx coef complete.cases predict pt update
Consider adding
  importFrom("stats", "AIC", "approx", "coef", "complete.cases",
             "predict", "pt", "update")
to your NAMESPACE file.

frontiles (1.2)

Maintainer: Thibault Laurent thibault.laurent@univ-tlse1.fr

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
ROCscore: no visible global function definition for ‘par’
ROCscore: no visible global function definition for ‘axis’
ROCscore: no visible global function definition for ‘mtext’
ROCscore: no visible global function definition for ‘legend’
alphafrontier.2d: no visible global function definition for ‘par’
alphafrontier.2d: no visible global function definition for ‘polygon’
alphafrontier.2d: no visible global function definition for ‘lines’
alphafrontier.2d: no visible global function definition for ‘points’
alphafrontier.3d: no visible global function definition for ‘layout’
... 6 lines ...
ordermfrontier.2d: no visible global function definition for ‘polygon’
ordermfrontier.2d: no visible global function definition for ‘lines’
ordermfrontier.2d: no visible global function definition for ‘points’
ordermscore.boot: no visible global function definition for ‘sd’
Undefined global functions or variables:
  axis barplot layout legend lines mtext na.omit par points polygon sd
Consider adding
  importFrom("graphics", "axis", "barplot", "layout", "legend", "lines",
             "mtext", "par", "points", "polygon")
  importFrom("stats", "na.omit", "sd")
to your NAMESPACE file.

fSRM (0.6.4)

Maintainer: Felix Schönbrodt felix@nicebread.de

0 errors | 0 warnings | 0 notes

funModeling (1.4)

Maintainer: Pablo Casas pabloc@datascienceheroes.com
Bug reports: https://github.com/pablo14/funModeling/issues

1 error | 0 warnings | 0 notes

checking whether package ‘funModeling’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/funModeling.Rcheck/00install.out’ for details.

funrar (1.0.1)

Maintainer: Matthias Grenié matthias.grenie@gmail.com
Bug reports: https://github.com/Rekyt/funrar/issues

0 errors | 0 warnings | 0 notes

futureheatwaves (1.0.1)

Maintainer: Brooke Anderson brooke.anderson@colostate.edu

0 errors | 0 warnings | 0 notes

fuzzyforest (1.0.2)

Maintainer: Daniel Conn djconn17@gmail.com

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘fuzzyforest-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ff
> ### Title: Fits fuzzy forest algorithm.
> ### Aliases: ff
> 
> ### ** Examples
... 9 lines ...
Attaching package: ‘fastcluster’

The following object is masked from ‘package:stats’:

    hclust

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
  there is no package called ‘GO.db’
Error: package or namespace load failed for ‘WGCNA’
Execution halted
** found \donttest examples: check also with --run-donttest

fuzzyjoin (0.1.2)

Maintainer: David Robinson drobinson@stackoverflow.com

0 errors | 0 warnings | 0 notes

G2Sd (2.1.5)

Maintainer: Regis K. Gallon reg.gallon@gmail.com

1 error | 0 warnings | 0 notes

checking whether package ‘G2Sd’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/G2Sd.Rcheck/00install.out’ for details.

gapfill (0.9.3)

Maintainer: Florian Gerber florian.gerber@math.uzh.ch

2 errors | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘gapfill-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Image
> ### Title: Image Panels
> ### Aliases: Image
> 
> ### ** Examples
> 
> Image(ndvi)
Error in theme(line = element_blank(), strip.background = element_rect(fill = "white",  : 
  formal argument "line" matched by multiple actual arguments
Calls: Image -> theme
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/run-all.R’ failed.
Last 13 lines of output:
  4: theme(line = element_blank(), strip.background = element_rect(fill = "white", color = "white"), 
         strip.text.x = element_text(), strip.text.y = element_text(), axis.ticks = element_blank(), 
         axis.text.x = element_blank(), axis.text.y = element_blank(), axis.title.x = element_blank(), 
         axis.title.y = element_blank(), line = element_blank(), legend.position = "right", 
         panel.border = element_blank(), plot.margin = unit(c(1, 1, 1, 1), "mm"), panel.margin = unit(2, 
             "mm"))
  
  testthat results ================================================================
  OK: 859 SKIPPED: 0 FAILED: 1
  1. Error: Image (@test-Image.R#5) 
  
  Error: testthat unit tests failed
  Execution halted

checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘doMPI’

checking R code for possible problems ... NOTE
Image: possible error in theme(line = element_blank(), strip.background
  = element_rect(fill = "white", color = "white"), strip.text.x =
  element_text(), strip.text.y = element_text(), axis.ticks =
  element_blank(), axis.text.x = element_blank(), axis.text.y =
  element_blank(), axis.title.x = element_blank(), axis.title.y =
  element_blank(), line = element_blank(), legend.position = "right",
  panel.border = element_blank(), plot.margin = unit(c(1, 1, 1, 1),
  "mm"), panel.margin = unit(2, "mm")): formal argument "line" matched
  by multiple actual arguments

gapmap (0.0.4)

Maintainer: Ryo Sakai ryo@vda-lab.be

0 errors | 0 warnings | 0 notes

gapminder (0.2.0)

Maintainer: Jennifer Bryan jenny@stat.ubc.ca
Bug reports: https://github.com/jennybc/gapminder/issues

0 errors | 0 warnings | 0 notes

gcerisk (16.1.3)

Maintainer: Hanjie Shen shenhanjie0418@gmail.com

0 errors | 0 warnings | 0 notes

gcookbook (1.0)

Maintainer: Winston Chang winston@stdout.org

0 errors | 0 warnings | 0 notes

GDAdata (0.93)

Maintainer: Antony Unwinunwin@math.uni-augsburg.de

0 errors | 0 warnings | 0 notes

GenCAT (1.0.3)

Maintainer: Eric Reed reeder@bu.edu

1 error | 1 warning | 3 notes

checking examples ... ERROR
Running examples in ‘GenCAT-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GenCAT
> ### Title: Running GenCAT
> ### Aliases: GenCAT
> ### Keywords: ~kwd1 ~kwd2
> 
... 15 lines ...
            SNP effect_allele other_allele   testStat chr position class
17232 rs9572807             C            T -0.3014771  13 72423959 DACH1
24151 rs4389009             G            A -1.4443860  13 99193519 STK24
37178 rs7151730             T            A  0.1387317  14 33531585 NPAS3
58941 rs1076958             G            A  2.0597766  14 91131857 TTC7B
13089 rs7987481             G            A -1.0024210  13 47318950 LRCH1
58302  rs411064             G            A  0.2132412  14 90008860 FOXN3
> 
> library(snpStats)
Error in library(snpStats) : there is no package called ‘snpStats’
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: ggplot2
Quitting from lines 62-69 (GenCAT-vignette.Rmd) 
Error: processing vignette 'GenCAT-vignette.Rmd' failed with diagnostics:
unable to find required package 'snpStats'
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘snpStats’

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘snpStats’

checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'snpStats'
  Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
  Execution halted

gender (0.5.1)

Maintainer: Lincoln Mullen lincoln@lincolnmullen.com
Bug reports: https://github.com/ropensci/gender/issues

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘genderdata’

geneSLOPE (0.37.0)

Maintainer: Piotr Sobczyk piotr.sobczyk@pwr.edu.pl
Bug reports: https://github.com/psobczyk/geneSLOPE/issues

0 errors | 0 warnings | 0 notes

genomeplot (1.0)

Maintainer: Jing Xuxujingaddressee@foxmail.com

0 errors | 0 warnings | 0 notes

geoknife (1.4.0)

Maintainer: Jordan Read jread@usgs.gov
Bug reports: https://github.com/USGS-R/geoknife/issues

0 errors | 0 warnings | 0 notes

geomnet (0.1.2.1)

Maintainer: Samantha Tyner sctyner@iastate.edu
Bug reports: https://github.com/sctyner/geomnet/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘geomnet-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: football
> ### Title: College football games network (undirected)
> ### Aliases: football
> ### Keywords: datasets
> 
... 23 lines ...
+     layout = 'fruchtermanreingold'
+   ) +
+   theme_net() +
+   theme(legend.position = "bottom") +
+   scale_colour_brewer("Conference", palette = "Paired")  +
+   guides(linetype = FALSE)
Warning: Ignoring unknown aesthetics: label
Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : 
  object 'panel_scales' not found
Calls: <Anonymous> ... f -> <Anonymous> -> f -> <Anonymous> -> f -> ::: -> get
Execution halted

GERGM (0.10.0)

Maintainer: Matthew J. Denny mdenny@psu.edu

0 errors | 0 warnings | 0 notes

GetHFData (1.2.0)

Maintainer: Marcelo Perlin marceloperlin@gmail.com

0 errors | 0 warnings | 0 notes

GetTDData (1.2.4)

Maintainer: Marcelo Perlin marceloperlin@gmail.com

0 errors | 0 warnings | 0 notes

gettingtothebottom (3.2)

Maintainer: Jocelyn T. Chi jocelynchi@alum.berkeley.edu

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
example.alpha: no visible global function definition for ‘rnorm’
example.quadratic.approx: no visible global function definition for
  ‘rnorm’
generate_nnm: no visible global function definition for ‘rnorm’
generate_nnm: no visible global function definition for ‘rgamma’
generate_nnm: no visible global function definition for ‘dnorm’
plot_nnm: no visible global function definition for ‘stack’
testmatrix: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  dnorm rgamma rnorm stack
Consider adding
  importFrom("stats", "dnorm", "rgamma", "rnorm")
  importFrom("utils", "stack")
to your NAMESPACE file.

gfcanalysis (1.4)

Maintainer: Alex Zvoleff azvoleff@conservation.org
Bug reports: https://github.com/azvoleff/gfcanalysis/issues

0 errors | 0 warnings | 0 notes

GGally (1.2.0)

Maintainer: Barret Schloerke schloerke@gmail.com
Bug reports: https://github.com/ggobi/ggally/issues

2 errors | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘GGally-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: +.gg
> ### Title: Modify a ggmatrix object by adding an ggplot2 object to all
> ###   plots
> ### Aliases: +.gg
> 
> ### ** Examples
> 
> data(tips, package = "reshape")
> pm <- ggpairs(tips[, 2:3])
> ## change to black and white theme
> pm + ggplot2::theme_bw()
Warning: `panel.margin` is deprecated. Please use `panel.spacing` property instead
Error in FUN(X[[i]], ...) : 
  only defined on a data frame with all numeric variables
Calls: <Anonymous> ... [ -> [.gtable -> Summary.data.frame -> lapply -> FUN
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  1.  Failure: stops (@test-ggmatrix_getput.R#23) 
  2.  Failure: stops (@test-ggmatrix_getput.R#23) 
  3.  Failure: stops (@test-ggmatrix_getput.R#23) 
  4.  Failure: stops (@test-ggmatrix_getput.R#23) 
  5.  Failure: stops (@test-ggmatrix_getput.R#23) 
  6.  Failure: stops (@test-ggmatrix_getput.R#23) 
  7.  Error: order (@test-ggparcoord.R#222) 
  8.  Error: axisLabels (@test-zzz_ggpairs.R#350) 
  9.  Error: strips and axis (@test-zzz_ggpairs.R#373) 
  10. Error: subtypes (@test-zzz_ggpairs.R#614) 
  
  Error: testthat unit tests failed
  Execution halted

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

ggalt (0.1.1)

Maintainer: Bob Rudis bob@rudis.net
Bug reports: https://github.com/hrbrmstr/ggalt/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘ggalt-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: coord_proj
> ### Title: Similar to 'coord_map' but uses the PROJ.4 library/package for
> ###   projection transformation
> ### Aliases: coord_proj
> 
... 7 lines ...
> 
> gg <- ggplot()
> gg <- gg + geom_map(data=world, map=world,
+                     aes(x=long, y=lat, map_id=region))
Warning: Ignoring unknown aesthetics: x, y
> gg <- gg + coord_proj("+proj=wintri")
> gg
Error in gPathFromVector(names) : 
  a 'grob' path must contain at least one 'grob' name
Calls: <Anonymous> ... valid.data -> recycle.data -> gPath -> gPathFromVector
Execution halted

ggbeeswarm (0.5.0)

Maintainer: Erik Clarke erikclarke@gmail.com

0 errors | 0 warnings | 0 notes

ggcorrplot (0.1.1)

Maintainer: Alboukadel Kassambara alboukadel.kassambara@gmail.com
Bug reports: https://github.com/kassambara/ggcorrplot/issues

0 errors | 0 warnings | 0 notes

ggdendro (0.1-20)

Maintainer: Andrie de Vries apdevries@gmail.com
Bug reports: https://github.com/andrie/ggdendro/issues

0 errors | 0 warnings | 0 notes

ggdmc (0.1.3.5)

Maintainer: Yi-Shin Lin yishin.lin@utas.edu.au
Bug reports: https://github.com/TasCL/ggdmc/issues

0 errors | 0 warnings | 0 notes

ggenealogy (0.2.0)

Maintainer: Lindsay Rutter lrutter@iastate.edu

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
  conversion failure on 'Barbara Choroś-Tomczyk' in 'mbcsToSbcs': dot substituted for <c5>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Barbara Choroś-Tomczyk' in 'mbcsToSbcs': dot substituted for <9b>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Ondřej Chochola' in 'mbcsToSbcs': dot substituted for <c5>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Ondřej Chochola' in 'mbcsToSbcs': dot substituted for <99>
... 8 lines ...
  conversion failure on 'Peter Čerňanský' in 'mbcsToSbcs': dot substituted for <8c>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Peter Čerňanský' in 'mbcsToSbcs': dot substituted for <c5>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Peter Čerňanský' in 'mbcsToSbcs': dot substituted for <88>

Error: processing vignette 'ggenealogy.Rnw' failed with diagnostics:
 chunk 57 (label = plotAnimate) 
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Execution halted

ggExtra (0.5)

Maintainer: Dean Attali daattali@gmail.com
Bug reports: https://github.com/daattali/ggExtra/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘ggExtra-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ggMarginal
> ### Title: Add marginal density/histogram to ggplot2 scatterplots
> ### Aliases: ggMarginal
> 
> ### ** Examples
> 
> 
> # basic usage
> p <- ggplot2::ggplot(mtcars, ggplot2::aes(wt, mpg)) + ggplot2::geom_point()
> ggMarginal(p)
Warning in mean.default(getLimits(pbTop, "y")) :
  argument is not numeric or logical: returning NA
Error: Don't know how to add o to a plot
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 94-95 (overview.Rmd) 
Error: processing vignette 'overview.Rmd' failed with diagnostics:
Don't know how to add o to a plot
Execution halted

ggfortify (0.2.0)

Maintainer: Masaaki Horikoshi sinhrks@gmail.com

1 error | 0 warnings | 1 note

checking tests ... ERROR
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
  
  testthat results ================================================================
  OK: 1072 SKIPPED: 4 FAILED: 7
  1. Failure: fortify.bats works for austres (@test-forecast.R#96) 
  2. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#180) 
  3. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#181) 
  4. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#182) 
  5. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#189) 
  6. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#190) 
  7. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#191) 
  
  Error: testthat unit tests failed
  Execution halted

checking installed package size ... NOTE
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc   4.9Mb

ggghost (0.2.1)

Maintainer: Jonathan Carroll rpkg@jcarroll.com.au
Bug reports: https://github.com/jonocarroll/ggghost/issues

0 errors | 0 warnings | 0 notes

ggiraph (0.3.2)

Maintainer: David Gohel david.gohel@ardata.fr
Bug reports: https://github.com/davidgohel/ggiraph/issues

0 errors | 0 warnings | 0 notes

gglogo (0.1.2)

Maintainer: Eric Hare erichare@iastate.edu
Bug reports: https://github.com/heike/gglogo/issues

0 errors | 0 warnings | 0 notes

ggloop (0.1.0)

Maintainer: Luke Smith luke@protocolvital.info
Bug reports: https://github.com/seasmith/ggloop/issues

0 errors | 0 warnings | 0 notes

ggmap (2.6.1)

Maintainer: David Kahle david.kahle@gmail.com
Bug reports: https://github.com/dkahle/ggmap/issues

0 errors | 0 warnings | 0 notes

ggmcmc (1.1)

Maintainer: Xavier Fernández i Marín xavier.fim@gmail.com
Bug reports: https://github.com/xfim/ggmcmc/issues

0 errors | 0 warnings | 0 notes

ggnetwork (0.5.1)

Maintainer: Francois Briatte f.briatte@gmail.com

2 errors | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘ggnetwork-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geom_edgetext_repel
> ### Title: Draw repulsive edge labels.
> ### Aliases: geom_edgelabel_repel geom_edgetext_repel
> 
> ### ** Examples
... 41 lines ...
Loading required package: sna
Loading required package: statnet.common
sna: Tools for Social Network Analysis
Version 2.4 created on 2016-07-23.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
 For citation information, type citation("sna").
 Type help(package="sna") to get started.

Error: GeomLabelRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  7: fetch_ggproto(x, name) at /Users/hadley/Documents/ggplot/ggplot2/R/ggproto.r:135
  8: stop(class(x)[[1]], " was built with an incompatible version of ggproto.\n", "Please reinstall the package that provides this extension.", 
         call. = FALSE) at /Users/hadley/Documents/ggplot/ggplot2/R/ggproto.r:122
  
  testthat results ================================================================
  OK: 11 SKIPPED: 0 FAILED: 4
  1. Error: geom_nodetext_repel works (@test-geoms.R#34) 
  2. Error: geom_nodelabel_repel works (@test-geoms.R#58) 
  3. Error: geom_edgetext_repel works (@test-geoms.R#101) 
  4. Error: geom_edgelabel_repel works (@test-geoms.R#108) 
  
  Error: testthat unit tests failed
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
network: Classes for Relational Data
Version 1.13.0 created on 2015-08-31.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
                    Mark S. Handcock, University of California -- Los Angeles
                    David R. Hunter, Penn State University
                    Martina Morris, University of Washington
                    Skye Bender-deMoll, University of Washington
 For citation information, type citation("network").
 Type help("network-package") to get started.

Loading required package: statnet.common
sna: Tools for Social Network Analysis
Version 2.4 created on 2016-07-23.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
 For citation information, type citation("sna").
 Type help(package="sna") to get started.

Quitting from lines 199-205 (ggnetwork.Rmd) 
Error: processing vignette 'ggnetwork.Rmd' failed with diagnostics:
GeomLabelRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

ggparallel (0.1.2)

Maintainer: Heike Hofmann hofmann@iastate.edu

0 errors | 0 warnings | 0 notes

ggpmisc (0.2.12)

Maintainer: Pedro J. Aphalo pedro.aphalo@helsinki.fi
Bug reports: https://bitbucket.org/aphalo/ggpmisc/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘ggpmisc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: stat_dens2d_filter
> ### Title: Filter observations in high density regions.
> ### Aliases: stat_dens2d_filter stat_dens2d_filter_g
> 
> ### ** Examples
... 39 lines ...
> 
> ggplot(data = d, aes(x, y, label = lab, color = group)) +
+   geom_point() +
+   stat_dens2d_filter(geom = "text")
> 
> ggplot(data = d, aes(x, y, label = lab, color = group)) +
+   geom_point() +
+   stat_dens2d_filter(geom = "text_repel")
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 680-683 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

ggpolypath (0.1.0)

Maintainer: Michael D. Sumner mdsumner@gmail.com
Bug reports: https://github.com/mdsumner/ggpolypath/issues

0 errors | 0 warnings | 0 notes

ggpubr (0.1.0)

Maintainer: Alboukadel Kassambara alboukadel.kassambara@gmail.com
Bug reports: https://github.com/kassambara/ggpubr/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘ggpubr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: diff_express
> ### Title: Differential gene expression analysis results
> ### Aliases: diff_express
> 
> ### ** Examples
... 6 lines ...
+    fdr = 0.05, fc = 2, size = 0.4,
+    palette = c("#B31B21", "#1465AC", "darkgray"),
+    genenames = as.vector(diff_express$name),
+    legend = "top", top = 20,
+    font.label = c("bold", 11),
+    font.legend = "bold",
+    font.main = "bold",
+    ggtheme = ggplot2::theme_minimal())
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

ggRandomForests (2.0.1)

Maintainer: John Ehrlinger john.ehrlinger@gmail.com
Bug reports: https://github.com/ehrlinger/ggRandomForests/issues

0 errors | 0 warnings | 0 notes

ggraptR (0.1)

Maintainer: Eugene Dubossarsky eugene@presciient.com
Bug reports: https://github.com/cargomoose/raptR/issues

0 errors | 0 warnings | 0 notes

ggrepel (0.6.3)

Maintainer: Kamil Slowikowski kslowikowski@fas.harvard.edu
Bug reports: http://github.com/slowkow/ggrepel/issues

0 errors | 0 warnings | 0 notes

ggROC (1.0)

Maintainer: Honglong Wu wuhonglong.china@gmail.com

0 errors | 0 warnings | 3 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘ggplot2’
A package should be listed in only one of these fields.

checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
ggroc: no visible global function definition for ‘ggplot’
ggroc: no visible global function definition for ‘aes’
ggroc: no visible global function definition for ‘geom_point’
ggroc: no visible global function definition for ‘geom_line’
ggroc: no visible global function definition for ‘theme’
ggroc: no visible global function definition for ‘element_text’
ggroc: no visible global function definition for ‘labs’
ggroc: no visible global function definition for ‘ggsave’
Undefined global functions or variables:
  aes element_text geom_line geom_point ggplot ggsave labs theme

ggsci (1.5)

Maintainer: Nan Xiao me@nanx.me
Bug reports: https://github.com/road2stat/ggsci/issues

0 errors | 0 warnings | 0 notes

ggseas (0.5.1)

Maintainer: Peter Ellis peter.ellis2013nz@gmail.com
Bug reports: https://github.com/ellisp/ggseas/issues

0 errors | 0 warnings | 0 notes

ggsn (0.3.1)

Maintainer: Oswaldo Santos Baquero oswaldosant@gmail.com

0 errors | 0 warnings | 0 notes

ggspectra (0.1.10)

Maintainer: Pedro J. Aphalo pedro.aphalo@helsinki.fi
Bug reports: https://bitbucket.org/aphalo/ggspectra

0 errors | 0 warnings | 0 notes

ggswissmaps (0.1.1)

Maintainer: Sandro Petrillo Burri gibo.gaf@gmail.com

0 errors | 0 warnings | 0 notes

ggtern (2.1.4)

Maintainer: Nicholas Hamilton nick@ggtern.com

1 error | 0 warnings | 0 notes

checking whether package ‘ggtern’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/ggtern.Rcheck/00install.out’ for details.

ggThemeAssist (0.1.5)

Maintainer: Calli Gross ggthemeassist@icloud.com

0 errors | 0 warnings | 0 notes

ggthemes (3.2.0)

Maintainer: Jeffrey B. Arnold jeffrey.arnold@gmail.com
Bug reports: http://github.com/jrnold/ggthemes

0 errors | 0 warnings | 0 notes

githubinstall (0.1.0)

Maintainer: Koji Makiyama hoxo.smile@gmail.com
Bug reports: https://github.com/hoxo-m/githubinstall/issues

0 errors | 0 warnings | 0 notes

gitter (1.1.1)

Maintainer: Omar Wagih wagih@ebi.ac.uk

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘EBImage’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

glinternet (1.0.0)

Maintainer: Michael Lim michael626@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
extract_effects : extract_interaction : <anonymous>: no visible global
  function definition for ‘lm’
extract_effects : extract_main_effect : <anonymous>: no visible global
  function definition for ‘lm’
glinternet.cv: no visible global function definition for ‘predict’
glinternet.cv: no visible binding for global variable ‘sd’
plot.glinternet.cv: no visible global function definition for ‘plot’
plot.glinternet.cv: no visible global function definition for
  ‘segments’
plot.glinternet.cv: no visible global function definition for ‘abline’
plot.glinternet.cv: no visible global function definition for ‘axis’
predict.glinternet.cv: no visible global function definition for
  ‘predict’
Undefined global functions or variables:
  abline axis lm plot predict sd segments
Consider adding
  importFrom("graphics", "abline", "axis", "plot", "segments")
  importFrom("stats", "lm", "predict", "sd")
to your NAMESPACE file.

glycanr (0.3.0)

Maintainer: Ivo Ugrina ivo@iugrina.com
Bug reports: https://github.com/iugrina/glycanr/issues

2 errors | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘glycanr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: quantilenorm
> ### Title: Quantile Normalization of glycan data
> ### Aliases: quantilenorm
> 
> ### ** Examples
> 
> data(mpiu)
> mpiun <- quantilenorm(mpiu)
Error in quantilenorm(mpiu) : 
  Unable to proceed since package preprocessCore from
        BioConductor is not available on this system. This
        package is a prerequisite to use the quantilenorm function!
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  Error in quantilenorm(mpiu, transpose = TRUE) : 
    Unable to proceed since package preprocessCore from
          BioConductor is not available on this system. This
          package is a prerequisite to use the quantilenorm function!
  Calls: test_check ... force -> source_file -> eval -> eval -> quantilenorm
  testthat results ================================================================
  OK: 5 SKIPPED: 0 FAILED: 0
  Execution halted

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘preprocessCore’

gmum.r (0.2.1)

Maintainer: Stanislaw Jastrzebski staszek.jastrzebski@gmail.com
Bug reports: https://github.com/gmum/gmum.r/issues

0 errors | 0 warnings | 0 notes

gmwm (2.0.0)

Maintainer: Stephane Guerrier stephane@illinois.edu
Bug reports: https://github.com/SMAC-Group/gmwm/issues

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘imudata’

gogamer (0.4.3)

Maintainer: Kota Mori kmori05@gmail.com
Bug reports: https://github.com/kota7/gogamer/issues

0 errors | 0 warnings | 0 notes

googlesheets (0.2.1)

Maintainer: Jennifer Bryan jenny@stat.ubc.ca
Bug reports: https://github.com/jennybc/googlesheets/issues

0 errors | 0 warnings | 0 notes

GOplot (1.0.2)

Maintainer: Wencke Walter wencke.walter@arcor.de
Bug reports: https://github.com/wencke/wencke.github.io/issues

0 errors | 0 warnings | 0 notes

gpmap (0.1.1)

Maintainer: Arne B. Gjuvsland arne.gjuvsland@nmbu.no

0 errors | 0 warnings | 3 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Checking should be performed on sources prepared by ‘R CMD build’.

checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘foreach’ ‘ggplot2’ ‘isotone’ ‘plyr’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
decompose_monotone: no visible global function definition for ‘%dopar%’
decompose_monotone: no visible global function definition for ‘foreach’
decompose_monotone: no visible global function definition for ‘%do%’
decompose_monotone_single: no visible global function definition for
  ‘%dopar%’
decompose_monotone_single: no visible global function definition for
  ‘foreach’
decompose_monotone_single: no visible global function definition for
  ‘laply’
... 50 lines ...
plot3_orig: no visible global function definition for ‘aes_string’
plot3_orig: no visible global function definition for ‘geom_line’
plot3_orig: no visible global function definition for ‘facet_wrap’
plot3_orig: no visible global function definition for ‘as.formula’
plot3_orig: no visible global function definition for ‘labs’
Undefined global functions or variables:
  %do% %dopar% aaply activeSet aes_string as.formula facet_grid
  facet_wrap foreach geom_line geom_point ggplot labs laply var
Consider adding
  importFrom("stats", "as.formula", "var")
to your NAMESPACE file.

granovaGG (1.4.0)

Maintainer: Brian A. Danielak brian@briandk.com

0 errors | 0 warnings | 0 notes

Greg (1.2)

Maintainer: Max Gordon max@gforge.se

2 errors | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘Greg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: simpleRmsAnova
> ### Title: A simpler latex output of the latex.anova.rms
> ### Aliases: print.simpleRmsAnova simpleRmsAnova
> ### Keywords: internal
> 
> ### ** Examples
> 
> # ** Borrowed code from the lrm example **
> 
> #Fit a logistic model containing predictors age, blood.pressure, sex
> #and cholesterol, with age fitted with a smooth 5-knot restricted cubic 
> #spline function and a different shape of the age relationship for males 
> #and females.  
> 
> library(rms)
Loading required package: Hmisc
Loading required package: lattice
Error: package ‘survival’ 2.39.5 was found, but >= 2.40.1 is required by ‘Hmisc’
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  2: .getRequiredPackages2(pkgInfo, quietly = quietly)
  3: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc, quietly = quietly)
  4: .getRequiredPackages2(pkgInfo, quietly = quietly)
  5: stop(gettextf(msg, sQuote(pkg), current, dep$op, target, sQuote(pkgname)), call. = FALSE, 
         domain = NA)
  
  Error: package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
  testthat results ================================================================
  OK: 12 SKIPPED: 0 FAILED: 1
  1. Error: That rms-functions work (@test-addNonlinearity.R#108) 
  
  Error: testthat unit tests failed
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: forestplot
Loading required package: grid
Loading required package: magrittr
Loading required package: Gmisc
Loading required package: Rcpp
Loading required package: htmlTable
Loading required package: lattice
Quitting from lines 56-65 (Print_crude_and_adjusted_models.Rmd) 
Error: processing vignette 'Print_crude_and_adjusted_models.Rmd' failed with diagnostics:
package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
Execution halted

greport (0.7-1)

Maintainer: Frank E Harrell Jr f.harrell@vanderbilt.edu

1 error | 0 warnings | 0 notes

checking whether package ‘greport’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/greport.Rcheck/00install.out’ for details.

gridDebug (0.5-0)

Maintainer: Paul Murrell p.murrell@auckland.ac.nz

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘graph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

gridExtra (2.2.1)

Maintainer: Baptiste Auguie baptiste.auguie@gmail.com

0 errors | 0 warnings | 0 notes

gridsampler (0.5)

Maintainer: Mark Heckmann heckmann.mark@gmail.com
Bug reports: https://github.com/markheckmann/gridsampler/issues

0 errors | 0 warnings | 0 notes

growcurves (0.2.4.0)

Maintainer: Terrance Savitsky tds151@gmail.com

0 errors | 0 warnings | 0 notes

growfunctions (0.13)

Maintainer: Terrance Savitsky tds151@gmail.com

0 errors | 0 warnings | 0 notes

growthcurver (0.2.1)

Maintainer: Kathleen sprouffske sprouffske@gmail.com
Bug reports: https://github.com/sprouffske/growthcurver/issues

0 errors | 0 warnings | 0 notes

gsDesign (3.0-1)

Maintainer: Keaven Anderson keaven_anderson@merck.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
plotgsCP: no visible global function definition for ‘opts’
plotgsPower: no visible global function definition for ‘opts’
qplotit: no visible global function definition for ‘opts’
Undefined global functions or variables:
  opts

GSE (4.0)

Maintainer: Andy Leung andy.leung@stat.ubc.ca

0 errors | 0 warnings | 0 notes

gtrendsR (1.3.5)

Maintainer: Philippe Massicotte pmassicotte@hotmail.com
Bug reports: https://github.com/PMassicotte/gtrendsR/issues

0 errors | 0 warnings | 0 notes

gunsales (0.1.1)

Maintainer: Dirk Eddelbuettel edd@debian.org

0 errors | 0 warnings | 0 notes

gutenbergr (0.1.2)

Maintainer: David Robinson admiral.david@gmail.com
Bug reports: http://github.com/ropenscilabs/gutenbergr/issues

0 errors | 0 warnings | 0 notes

gwdegree (0.1.1)

Maintainer: Michael Levy malevy@ucdavis.edu
Bug reports: https://github.com/michaellevy/gwdegree/issues

0 errors | 0 warnings | 0 notes

gWQS (1.0.0)

Maintainer: Stefano Renzetti stefano.renzetti88@gmail.com

0 errors | 0 warnings | 0 notes

h2o (3.10.0.8)

Maintainer: Tom Kraljevic tomk@0xdata.com

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is 63.6Mb
  sub-directories of 1Mb or more:
    java  62.4Mb

hazus (0.1)

Maintainer: Gopi Goteti my.ration.shop@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
extract_hazus_functions: no visible global function definition for
  ‘data’
Undefined global functions or variables:
  data
Consider adding
  importFrom("utils", "data")
to your NAMESPACE file.

hBayesDM (0.2.3.1)

Maintainer: Woo-Young Ahn ahn.280@osu.edu

0 errors | 0 warnings | 0 notes

hdm (0.2.0)

Maintainer: Martin Spindler spindler@mea.mpisoc.mpg.de

0 errors | 0 warnings | 0 notes

hdnom (4.2)

Maintainer: Nan Xiao me@nanx.me
Bug reports: https://github.com/road2stat/hdnom/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘hdnom-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hdcox.aenet
> ### Title: Adaptive Elastic-Net Model Selection for High-Dimensional Cox
> ###   Models
> ### Aliases: hdcox.aenet
> 
> ### ** Examples
> 
> library("survival")
> library("rms")
Loading required package: Hmisc
Loading required package: lattice
Error: package ‘survival’ 2.39.5 is loaded, but >= 2.40.1 is required by ‘Hmisc’
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 135-144 (hdnom.Rmd) 
Error: processing vignette 'hdnom.Rmd' failed with diagnostics:
package 'survival' 2.39.5 is loaded, but >= 2.40.1 is required by 'Hmisc'
Execution halted

hdr (0.1)

Maintainer: Eric Persson expersso5@gmail.com
Bug reports: https://github.com/expersso/hdr

0 errors | 0 warnings | 0 notes

heatmaply (0.6.0)

Maintainer: Tal Galili tal.galili@gmail.com
Bug reports: https://github.com/talgalili/heatmaply/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘heatmaply-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: heatmapr
> ### Title: Creates a heatmapr object
> ### Aliases: heatmapr
> 
> ### ** Examples
> 
> library(heatmaply)
> hm <- heatmapr(mtcars, scale = "column", colors = "Blues")
> heatmaply(hm)
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Calls: heatmaply ... heatmaply.heatmapr -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout
... 8 lines ...

Suggestions and bug-reports can be submitted at: https://github.com/talgalili/heatmaply/issues
Or contact: <tal.galili@gmail.com>

	To suppress this message use:  suppressPackageStartupMessages(library(heatmaply))
---------------------

Quitting from lines 83-85 (heatmaply.Rmd) 
Error: processing vignette 'heatmaply.Rmd' failed with diagnostics:
attempt to apply non-function
Execution halted

heemod (0.5.1)

Maintainer: Antoine Filipovic-Pierucci pierucci@gmail.com
Bug reports: https://github.com/pierucci/heemod/issues

0 errors | 0 warnings | 0 notes

heuristica (1.0.1)

Maintainer: Jean Whitmore jeanimal@gmail.com
Bug reports: https://github.com/jeanimal/heuristica/issues

0 errors | 0 warnings | 0 notes

hierarchicalDS (2.9)

Maintainer: Paul B Conn paul.conn@noaa.gov

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
calc_linex_a: no visible global function definition for ‘optimize’
generate_inits: no visible global function definition for ‘rnorm’
generate_inits: no visible global function definition for ‘runif’
generate_inits: no visible global function definition for ‘rpois’
generate_inits_misID: no visible global function definition for ‘runif’
generate_inits_misID: no visible global function definition for ‘rnorm’
generate_inits_misID: no visible global function definition for ‘rpois’
get_confusion_array: no visible global function definition for
  ‘model.matrix’
... 34 lines ...
table.mcmc: no visible global function definition for ‘write.csv’
Undefined global functions or variables:
  abline dnorm dpois legend median model.matrix optimize par plot pnorm
  points rgamma rnorm rpois runif var write.csv
Consider adding
  importFrom("graphics", "abline", "legend", "par", "plot", "points")
  importFrom("stats", "dnorm", "dpois", "median", "model.matrix",
             "optimize", "pnorm", "rgamma", "rnorm", "rpois", "runif",
             "var")
  importFrom("utils", "write.csv")
to your NAMESPACE file.

hierarchicalSets (1.0.2)

Maintainer: Thomas Lin Pedersen thomasp85@gmail.com

0 errors | 0 warnings | 1 note

checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  ‘ggplot2:::build_guides’ ‘ggplot2:::guide_axis’
  ‘ggplot2:::scales_list’
  See the note in ?`:::` about the use of this operator.

highcharter (0.4.0)

Maintainer: Joshua Kunst jbkunst@gmail.com
Bug reports: https://github.com/jbkunst/highcharter/issues

0 errors | 0 warnings | 0 notes

HighDimOut (1.0.0)

Maintainer: Cheng Fan raja8885@hotmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
Func.ABOD: no visible global function definition for ‘combn’
Func.ABOD: no visible global function definition for ‘var’
Func.SOD: no visible global function definition for ‘var’
Func.trans : erf: no visible global function definition for ‘pnorm’
Func.trans: no visible global function definition for ‘sd’
Undefined global functions or variables:
  combn pnorm sd var
Consider adding
  importFrom("stats", "pnorm", "sd", "var")
  importFrom("utils", "combn")
to your NAMESPACE file.

HistData (0.7-8)

Maintainer: Michael Friendly friendly@yorku.ca

0 errors | 0 warnings | 1 note

checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘Guerry’, ‘alr3’, ‘agridat’

HistDAWass (0.1.4)

Maintainer: Antonio Irpino antonio.irpino@unina2.it

0 errors | 0 warnings | 0 notes

historydata (0.1)

Maintainer: Lincoln Mullen lincoln@lincolnmullen.com
Bug reports: https://github.com/ropensci/historydata/issues

0 errors | 0 warnings | 0 notes

HiveR (0.2.55)

Maintainer: Bryan A. Hanson hanson@depauw.edu
Bug reports: https://github.com/bryanhanson/HiveR/issues

0 errors | 0 warnings | 0 notes

HLMdiag (0.3.1)

Maintainer: Adam Loy loyad01@gmail.com
Bug reports: https://github.com/aloy/HLMdiag/issues

0 errors | 0 warnings | 0 notes

Hmisc (4.0-0)

Maintainer: Frank E Harrell Jr f.harrell@vanderbilt.edu

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required and available but unsuitable version: ‘survival’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

HRM (0.3.5)

Maintainer: Martin Happ martin.happ@aon.at

0 errors | 0 warnings | 0 notes

HTSSIP (1.0.3)

Maintainer: Nicholas Youngblut nyoungb2@gmail.com

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘DESeq2’ ‘phyloseq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

httk (1.4)

Maintainer: John Wambaugh wambaugh.john@epa.gov

0 errors | 0 warnings | 0 notes

HWxtest (1.1.7)

Maintainer: Bill Engels wrengels@wisc.edu

0 errors | 0 warnings | 0 notes

hybridModels (0.2.6)

Maintainer: Fernando S. Marques fernandosix@gmail.com
Bug reports: https://github.com/fernandosm/hybridModels/issues

0 errors | 0 warnings | 0 notes

hyfo (1.3.6)

Maintainer: Yuanchao Xu xuyuanchao37@gmail.com
Bug reports: https://github.com/Yuanchao-Xu/hyfo/issues

0 errors | 0 warnings | 0 notes

hyperSpec (0.98-20150304)

Maintainer: Claudia Beleites chemometrie@beleites.de

1 error | 1 warning | 1 note

checking examples ... ERROR
Running examples in ‘hyperSpec-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: qplotspc
> ### Title: Spectra plotting with ggplot2
> ### Aliases: qplotspc
> 
> ### ** Examples
> 
> qplotspc (chondro)
Warning in qplotspc(chondro) :
  Number of spectra exceeds spc.nmax. Only the first 10 are plotted.
>   qplotspc (paracetamol, c (2800 ~ max, min ~ 1800)) + scale_x_reverse (breaks = seq (0, 3200, 400))
Error in gtable_add_grob(panel_table, strips$x$top, 2, panel_pos_col$l,  : 
  Not all inputs have either length 1 or same length same as 'grobs'
Calls: <Anonymous> ... <Anonymous> -> f -> <Anonymous> -> f -> gtable_add_grob
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in plotc(x, ...) : Intensity at first wavelengh only is used.
Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col,  :
  'x' values are not equispaced; output may be wrong
Warning in hyperSpec:::.levelplot(x, data, ...) :
  Only first wavelength is used for plotting
Loading required package: latticeExtra
Loading required package: RColorBrewer
... 8 lines ...
Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col,  :
  'x' values are not equispaced; output may be wrong
Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col,  :
  'y' values are not equispaced; output may be wrong
Warning: Ignoring unknown aesthetics: y

Error: processing vignette 'plotting.Rnw' failed with diagnostics:
 chunk 77 (label = ggplot2-do) 
Error in gtable_add_grob(panel_table, strips$x$top, 2, panel_pos_col$l,  : 
  Not all inputs have either length 1 or same length same as 'grobs'
Execution halted

checking R code for possible problems ... NOTE
Warning: local assignments to syntactic functions: ~
Warning: local assignments to syntactic functions: ~
.cut.ticks: no visible global function definition for ‘head’
.jdx.TABULAR.PAC: no visible global function definition for ‘head’
.jdx.hdr.concentrations: no visible global function definition for
  ‘modifyList’
.jdx.readhdr: no visible global function definition for ‘maintainer’
.labels: no visible global function definition for ‘modifyList’
.levelplot: no visible global function definition for ‘modifyList’
... 56 lines ...
  ‘modifyList’
plot,hyperSpec-character: no visible global function definition for
  ‘modifyList’
Undefined global functions or variables:
  chull col2rgb colorRampPalette head maintainer modifyList read.table
  relist rgb str tail unstack write.table
Consider adding
  importFrom("grDevices", "chull", "col2rgb", "colorRampPalette", "rgb")
  importFrom("utils", "head", "maintainer", "modifyList", "read.table",
             "relist", "str", "tail", "unstack", "write.table")
to your NAMESPACE file.

IAPWS95 (1.0.0)

Maintainer: Benedito Baptista bene46@msn.com

1 error | 0 warnings | 0 notes

checking whether package ‘IAPWS95’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/IAPWS95.Rcheck/00install.out’ for details.

IAT (0.3)

Maintainer: Dan Martin dpmartin42@gmail.com

0 errors | 0 warnings | 0 notes

ibmdbR (1.48.0)

Maintainer: Alexander Eckert inza@de.ibm.com

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘RODBC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

icarus (0.2.2)

Maintainer: Antoine Rebecq antoine.rebecq@m4x.org

0 errors | 0 warnings | 0 notes

icd9 (1.3.1)

Maintainer: Jack O. Wasey jack@jackwasey.com
Bug reports: https://github.com/jackwasey/icd9/issues

0 errors | 0 warnings | 0 notes

idm (1.7.1)

Maintainer: Angelos Markos amarkos@gmail.com

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘idm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: i_mca
> ### Title: Incremental Multiple Correspondence Analysis (MCA)
> ### Aliases: i_mca
> 
> ### ** Examples
> 
> ##Example 1 - Exact case
> data("women", package = "idm")
> nc = 5 # number of chunks
> res_iMCAh = i_mca(data1 = women[1:300,1:7], data2 = women[301:2107,1:7]
+ ,method = "exact", nchunk = nc)
> #static MCA plot of attributes on axes 2 and 3
> plot(x = res_iMCAh, dim = c(2,3), what = c(FALSE,TRUE), animation = FALSE)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted
** found \donttest examples: check also with --run-donttest

ie2miscdata (1.0.1)

Maintainer: Irucka Embry iembry@usgs.gov
Bug reports: https://github.com/iembry-USGS/ie2miscdata/issues

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Error in (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE,  : 
  there is no package called 'states2k'
Quitting from lines 24-109 (US-Engineering-Weather-Map.Rmd) 
Error: processing vignette 'US-Engineering-Weather-Map.Rmd' failed with diagnostics:
object 'states2k_map' not found
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘states2k’

ifaTools (0.13)

Maintainer: Joshua N. Pritikin jpritikin@pobox.com

0 errors | 0 warnings | 0 notes

IGM.MEA (0.3.4)

Maintainer: Sahar Gelfman sg3261@columbia.edu

0 errors | 0 warnings | 0 notes

imageData (0.1-26)

Maintainer: Chris Brien Chris.Brien@unisa.edu.au

1 error | 0 warnings | 0 notes

checking whether package ‘imageData’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/imageData.Rcheck/00install.out’ for details.

imager (0.31)

Maintainer: Simon Barthelme simon.barthelme@gipsa-lab.fr
Bug reports: https://github.com/dahtah/imager/issues

0 errors | 1 warning | 1 note

checking whether package ‘imager’ can be installed ... WARNING
Found the following significant warnings:
  ../inst/include/CImg.h:13559:29: warning: multiple unsequenced modifications to 'ptrs' [-Wunsequenced]
  ../inst/include/CImg.h:13738:19: warning: multiple unsequenced modifications to 'ptrs' [-Wunsequenced]
  ../inst/include/CImg.h:22316:23: warning: unsequenced modification and access to 'right' [-Wunsequenced]
  ../inst/include/CImg.h:29395:35: warning: unsequenced modification and access to '_n2x' [-Wunsequenced]
  ../inst/include/CImg.h:29395:35: warning: multiple unsequenced modifications to '_n3x' [-Wunsequenced]
  ../inst/include/CImg.h:29395:35: warning: unsequenced modification and access to '_n1x' [-Wunsequenced]
  ../inst/include/CImg.h:29415:40: warning: unsequenced modification and access to '_n2x' [-Wunsequenced]
  ../inst/include/CImg.h:29415:40: warning: multiple unsequenced modifications to '_n3x' [-Wunsequenced]
... 9 lines ...
  ../inst/include/CImg.h:29478:40: warning: unsequenced modification and access to '_n1x' [-Wunsequenced]
  ../inst/include/CImg.h:30531:19: warning: unsequenced modification and access to 'right' [-Wunsequenced]
  ../inst/include/CImg.h:31964:17: warning: multiple unsequenced modifications to '_n2x' [-Wunsequenced]
  ../inst/include/CImg.h:31964:17: warning: unsequenced modification and access to '_n1x' [-Wunsequenced]
  ../inst/include/CImg.h:44923:18: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:44931:18: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:44941:22: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:45125:18: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:45133:18: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:45142:20: warning: unsequenced modification and access to 'err' [-Wunsequenced]
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/imager.Rcheck/00install.out’ for details.

checking installed package size ... NOTE
  installed size is 11.1Mb
  sub-directories of 1Mb or more:
    data      1.4Mb
    doc       3.4Mb
    include   2.6Mb
    libs      2.5Mb

IMP (1.1)

Maintainer: Anup Nair nairanup50695@gmail.com

0 errors | 0 warnings | 0 notes

imputeTestbench (3.0.0)

Maintainer: Marcus W. Beck mbafs2012@gmail.com
Bug reports: https://github.com/neerajdhanraj/imputeTestbench/issues

0 errors | 0 warnings | 0 notes

incidence (1.0.0)

Maintainer: Thibaut Jombart thibautjombart@gmail.com
Bug reports: http://github.com/reconhub/incidence/issues

0 errors | 0 warnings | 0 notes

inctools (1.0.7)

Maintainer: Eduard Grebe eduardgrebe@sun.ac.za
Bug reports: https://github.com/SACEMA/inctools/issues

0 errors | 0 warnings | 0 notes

IncucyteDRC (0.5.4)

Maintainer: Phil Chapman phil.chapman@cruk.manchester.ac.uk
Bug reports: https://github.com/chapmandu2/IncucyteDRC/issues

0 errors | 0 warnings | 0 notes

iNEXT (2.0.9)

Maintainer: T. C. Hsieh euler96@gmail.com
Bug reports: https://github.com/JohnsonHsieh/iNEXT/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 416-424 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
invalid line type
Execution halted

Information (0.0.9)

Maintainer: Larsen Kim kblarsen4@gmail.com

0 errors | 0 warnings | 0 notes

InformationValue (1.2.3)

Maintainer: Selva Prabhakaran selva86@gmail.com
Bug reports: https://github.com/selva86/InformationValue/issues License: GPL (>= 2)

0 errors | 0 warnings | 0 notes

InSilicoVA (1.1.2)

Maintainer: Zehang Li lizehang@uw.edu

1 error | 0 warnings | 0 notes

checking whether package ‘InSilicoVA’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/InSilicoVA.Rcheck/00install.out’ for details.

IntClust (0.0.2)

Maintainer: Marijke Van Moerbeke marijke.vanmoerbeke@uhasselt.be

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘a4Core’ ‘limma’

Packages suggested but not available for checking:
  ‘MLP’ ‘biomaRt’ ‘org.Hs.eg.db’ ‘a4Base’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

IntegratedJM (1.4)

Maintainer: Rudradev Sengupta rudradev.sengupta@uhasselt.be

0 errors | 0 warnings | 0 notes

IntegratedMRF (1.1.5)

Maintainer: Raziur Rahman razeeebuet@gmail.com

0 errors | 0 warnings | 0 notes

interplot (0.1.4)

Maintainer: Yue Hu yue-hu-1@uiowa.edu

0 errors | 0 warnings | 0 notes

intsvy (1.9)

Maintainer: Daniel Caro daniel.caro@education.ox.ac.uk
Bug reports: https://github.com/eldafani/intsvy/issues

0 errors | 0 warnings | 0 notes

IPtoCountry (0.0.1)

Maintainer: Ronald E. Robertson robertson.ron@husky.neu.edu

0 errors | 0 warnings | 0 notes

ITEMAN (1.0)

Maintainer: Cengiz Zopluoglu c.zopluoglu@miami.edu

0 errors | 0 warnings | 0 notes

iWISA (1.0-2)

Maintainer: Wen Xiao wx5356a@student.american.edu

0 errors | 0 warnings | 0 notes

JacobiEigen (0.2-2)

Maintainer: Bill Venables Bill.Venables@gmail.com

0 errors | 0 warnings | 0 notes

JWileymisc (0.2.1)

Maintainer: Joshua F. Wiley jwiley.psych@gmail.com
Bug reports: https://github.com/JWiley/JWileymisc/issues

0 errors | 0 warnings | 0 notes

kamila (0.1.1.1)

Maintainer: Alexander Foss alexanderhfoss@gmail.com
Bug reports: https://github.com/ahfoss/kamila/issues

0 errors | 0 warnings | 0 notes

kdetrees (0.1.5)

Maintainer: Grady Weyenberg grady.weyenberg@uky.edu

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
as.matrix.multiPhylo : tip2tip: no visible global function definition
  for ‘cophenetic’
bw.nn : <anonymous>: no visible global function definition for
  ‘quantile’
dist.diss: no visible binding for global variable ‘median’
dist.diss: no visible global function definition for ‘dist’
hist.kdetrees: no visible binding for global variable ‘density’
kdetrees : cutoff: no visible global function definition for ‘quantile’
kdetrees.complete: no visible global function definition for ‘plot’
kdetrees.complete: no visible global function definition for ‘hist’
kdetrees.complete: no visible global function definition for
  ‘write.csv’
plot.kdetrees: no visible binding for global variable ‘density’
Undefined global functions or variables:
  cophenetic density dist hist median plot quantile write.csv
Consider adding
  importFrom("graphics", "hist", "plot")
  importFrom("stats", "cophenetic", "density", "dist", "median",
             "quantile")
  importFrom("utils", "write.csv")
to your NAMESPACE file.

kfigr (1.2)

Maintainer: Michael C Koohafkan michael.koohafkan@gmail.com
Bug reports: https://github.com/mkoohafkan/kfigr/issues

0 errors | 0 warnings | 0 notes

Kmisc (0.5.0)

Maintainer: Kevin Ushey kevinushey@gmail.com
Bug reports: https://github.com/kevinushey/Kmisc/issues

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
Rcpp_apply_generator: no visible global function definition for
  ‘packageVersion’
Rcpp_tapply_generator: no visible global function definition for
  ‘packageVersion’
anat: no visible global function definition for ‘capture.output’
anatomy: no visible global function definition for ‘capture.output’
bwplot2: no visible global function definition for ‘capture.output’
gradient: no visible global function definition for ‘colorRampPalette’
hImg: no visible global function definition for ‘par’
... 23 lines ...
  anova capture.output coef colorRampPalette complete.cases dev.off
  kmeans object.size packageVersion par qbeta read.table rgb svg
  write.table
Consider adding
  importFrom("grDevices", "colorRampPalette", "dev.off", "rgb", "svg")
  importFrom("graphics", "par")
  importFrom("stats", "anova", "coef", "complete.cases", "kmeans",
             "qbeta")
  importFrom("utils", "capture.output", "object.size", "packageVersion",
             "read.table", "write.table")
to your NAMESPACE file.

knitrBootstrap (1.0.0)

Maintainer: Jim Hester james.f.hester@gmail.com
Bug reports: https://github.com/jimhester/knitrBootstrap/issues

0 errors | 0 warnings | 0 notes

kobe (1.3.2)

Maintainer: Laurence Kell laurie.kell@iccat.int

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
getBSP: no visible global function definition for ‘read.csv’
io2box : <anonymous>: no visible global function definition for
  ‘quantile’
io2box : <anonymous>: no visible global function definition for
  ‘median’
ioAspic : <anonymous>: no visible global function definition for
  ‘quantile’
ioAspic : <anonymous>: no visible global function definition for
  ‘median’
... 55 lines ...
kobe,data.frame-missing : <anonymous>: no visible global function
  definition for ‘kobeFn’
Undefined global functions or variables:
  colorRampPalette grey kobe2smFn kobeFn median modifyList mtext par
  quantile read.csv read.table
Consider adding
  importFrom("grDevices", "colorRampPalette", "grey")
  importFrom("graphics", "mtext", "par")
  importFrom("stats", "median", "quantile")
  importFrom("utils", "modifyList", "read.csv", "read.table")
to your NAMESPACE file.

KSD (1.0.0)

Maintainer: Min Hyung Kang Minhyung.Daniel.Kang@gmail.com

0 errors | 0 warnings | 0 notes

Lahman (5.0-0)

Maintainer: Chris Dalzell cdalzell@gmail.com

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  7.6Mb
  sub-directories of 1Mb or more:
    data   7.3Mb

LambertW (0.6.4)

Maintainer: Georg M. Goerg im@gmge.org

0 errors | 0 warnings | 0 notes

LANDD (1.1.0)

Maintainer: Shangzhao Qiu qsz1328@gmail.com

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘GOstats’ ‘GOSemSim’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

largeVis (0.1.9.1)

Maintainer: Amos Elberg amos.elberg@gmail.com
Bug reports: https://github.com/elbamos/largeVis/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 14-55 (benchmarks.Rmd) 
Error: processing vignette 'benchmarks.Rmd' failed with diagnostics:
formal argument "legend.key.size" matched by multiple actual arguments
Execution halted

latex2exp (0.4.0)

Maintainer: Stefano Meschiari stefano.meschiari@gmail.com
Bug reports: https://github.com/stefano-meschiari/latex2exp/issues

0 errors | 0 warnings | 0 notes

lda (1.4.2)

Maintainer: Jonathan Chang slycoder@gmail.com

0 errors | 0 warnings | 0 notes

ldatuning (0.2.0)

Maintainer: Murzintcev Nikita nikita@lreis.ac.cn
Bug reports: https://github.com/nikita-moor/ldatuning/issues

0 errors | 0 warnings | 0 notes

LDheatmap (0.99-2)

Maintainer: Brad McNeney mcneney@sfu.ca

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘chopsticks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

LEAP (0.2)

Maintainer: Alicia T. Specht aspecht2@nd.edu

0 errors | 0 warnings | 0 notes

learningCurve (1.0)

Maintainer: Jason Freels auburngrads@live.com

0 errors | 0 warnings | 0 notes

learnstats (0.1.1)

Maintainer: Daniel Walter dswalter@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
prob: no visible global function definition for ‘pnorm’
prob: no visible global function definition for ‘dnorm’
prob: no visible global function definition for ‘plot’
prob : <anonymous>: no visible global function definition for ‘dnorm’
prob: no visible global function definition for ‘axis’
prob: no visible global function definition for ‘polygon’
prob: no visible global function definition for ‘legend’
prob: no visible global function definition for ‘jpeg’
prob: no visible global function definition for ‘dev.off’
... 37 lines ...
  axis dchisq dev.off dnorm dt hist jpeg legend mtext par pchisq pf
  plot pnorm polygon pt qchisq qf qqline qqnorm qt rchisq rnorm rt
  runif segments title
Consider adding
  importFrom("grDevices", "dev.off", "jpeg")
  importFrom("graphics", "axis", "hist", "legend", "mtext", "par",
             "plot", "polygon", "segments", "title")
  importFrom("stats", "dchisq", "dnorm", "dt", "pchisq", "pf", "pnorm",
             "pt", "qchisq", "qf", "qqline", "qqnorm", "qt", "rchisq",
             "rnorm", "rt", "runif")
to your NAMESPACE file.

LexisPlotR (0.3)

Maintainer: Philipp Ottolinger philipp@ottolinger.de

0 errors | 0 warnings | 0 notes

likeLTD (6.1.1)

Maintainer: Christopher Steele c.steele.11@ucl.ac.uk

0 errors | 0 warnings | 0 notes

likert (1.3.3)

Maintainer: Jason Bryer jason@bryer.org
Bug reports: https://github.com/jbryer/likert/issues

0 errors | 0 warnings | 0 notes

linear.tools (1.3.0)

Maintainer: Fan Yang yfno1@msn.com

0 errors | 0 warnings | 0 notes

llama (0.9.1)

Maintainer: Lars Kotthoff larsko@cs.ubc.ca

1 error | 0 warnings | 0 notes

checking whether package ‘llama’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/llama.Rcheck/00install.out’ for details.

lme4 (1.1-12)

Maintainer: Ben Bolker bbolker+lme4@gmail.com
Bug reports: https://github.com/lme4/lme4/issues

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc        1.8Mb
    testdata   1.5Mb

lmerTest (2.0-32)

Maintainer: Alexandra Kuznetsova alku@dtu.dk

0 errors | 0 warnings | 0 notes

lmms (1.3.3)

Maintainer: Jasmin Straube j.straube@qfab.org

0 errors | 0 warnings | 0 notes

localgauss (0.35)

Maintainer: Tore Selland Kleppe tore.kleppe@uis.no

1 error | 0 warnings | 0 notes

checking whether package ‘localgauss’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/localgauss.Rcheck/00install.out’ for details.

LocFDRPois (1.0.0)

Maintainer: Kris Sankaran kriss1@stanford.edu

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
AnalyticalOptim: no visible global function definition for ‘optim’
LLConstructor : LL: no visible global function definition for ‘dpois’
MixtureDensity: no visible global function definition for ‘glm’
MixtureDensity : f_hat: no visible global function definition for
  ‘predict’
NullDensity : f0: no visible global function definition for ‘dpois’
Undefined global functions or variables:
  dpois glm optim predict
Consider adding
  importFrom("stats", "dpois", "glm", "optim", "predict")
to your NAMESPACE file.

logisticPCA (0.2)

Maintainer: Andrew J. Landgraf andland@gmail.com

0 errors | 0 warnings | 0 notes

LOGIT (1.3)

Maintainer: Rafael S. de Souza rafael.2706@gmail.com

0 errors | 0 warnings | 0 notes

lsbclust (1.0.4)

Maintainer: Pieter Schoonees schoonees@gmail.com

0 errors | 0 warnings | 0 notes

lsl (0.5.5)

Maintainer: Po-Hsien Huang psyphh@gmail.com

0 errors | 0 warnings | 0 notes

ltbayes (0.4)

Maintainer: Timothy R. Johnson trjohns@uidaho.edu

1 error | 0 warnings | 0 notes

checking whether package ‘ltbayes’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/ltbayes.Rcheck/00install.out’ for details.

lvplot (0.2.0)

Maintainer: Hadley Wickham hadley@rstudio.com

0 errors | 0 warnings | 0 notes

MAc (1.1)

Maintainer: AC Del Re acdelre@gmail.com

0 errors | 0 warnings | 4 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘R2wd’

checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘R2wd’ ‘ggplot2’ ‘metafor’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  mareg.default print.icclist print.macat print.mareg print.omni
  print.summary.mareg r2.mareg summary.mareg wd.default wd.macat
  wd.mareg wd.omni
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

checking R code for possible problems ... NOTE
CatCompf: no visible global function definition for ‘aov’
CatCompf: no visible global function definition for ‘TukeyHSD’
CatCompf: no visible global function definition for ‘pchisq’
CatCompr: no visible global function definition for ‘aov’
CatCompr: no visible global function definition for ‘TukeyHSD’
CatCompr: no visible global function definition for ‘pchisq’
CatModGraph: no visible global function definition for ‘ggplot’
CatModGraph: no visible global function definition for ‘aes’
CatModGraph: no visible binding for global variable ‘z’
... 147 lines ...
  geom_errorbarh geom_jitter geom_point geom_smooth geom_vline ggplot
  id l.ci95 lm model.extract model.matrix model.response na.omit opts
  pchisq pf pnorm printCoefmat qf qt r rma scale_y_continuous se.z
  se.z.tau stat_abline stat_summary u.ci95 var var.g wdGet wdHeading
  wdNewDoc wdTable wi wi.tau xlab xlim ylab ylim z
Consider adding
  importFrom("stats", "TukeyHSD", "aggregate", "anova", "aov",
             "contrasts", "lm", "model.extract", "model.matrix",
             "model.response", "na.omit", "pchisq", "pf", "pnorm",
             "printCoefmat", "qf", "qt", "var")
to your NAMESPACE file.

macleish (0.3.0)

Maintainer: Ben Baumer ben.baumer@gmail.com

0 errors | 0 warnings | 0 notes

MAd (0.8-2)

Maintainer: AC Del Re acdelre@gmail.com

0 errors | 0 warnings | 4 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘R2wd’

checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘R2wd’ ‘ggplot2’ ‘metafor’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  mareg.default print.icclist print.macat print.mareg print.omni
  print.summary.mareg r2.mareg summary.mareg wd.default wd.macat
  wd.mareg wd.omni
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

checking R code for possible problems ... NOTE
CatCompf: no visible global function definition for ‘aov’
CatCompf: no visible global function definition for ‘TukeyHSD’
CatCompf: no visible global function definition for ‘pchisq’
CatCompr: no visible global function definition for ‘aov’
CatCompr: no visible global function definition for ‘TukeyHSD’
CatCompr: no visible global function definition for ‘pchisq’
CatModf: no visible global function definition for ‘aggregate’
CatModf: no visible global function definition for ‘pnorm’
CatModf: no visible global function definition for ‘pchisq’
... 35 lines ...
robustSE: no visible global function definition for ‘qt’
Undefined global functions or variables:
  TukeyHSD aggregate anova aov contrasts model.extract model.matrix
  model.response na.omit pchisq pf pnorm printCoefmat pt qf qt
  residuals var
Consider adding
  importFrom("stats", "TukeyHSD", "aggregate", "anova", "aov",
             "contrasts", "model.extract", "model.matrix",
             "model.response", "na.omit", "pchisq", "pf", "pnorm",
             "printCoefmat", "pt", "qf", "qt", "residuals", "var")
to your NAMESPACE file.

maddison (0.1)

Maintainer: Eric Persson expersso5@gmail.com

0 errors | 0 warnings | 0 notes

magick (0.3)

Maintainer: Jeroen Ooms jeroen.ooms@stat.ucla.edu
Bug reports: https://github.com/ropensci/magick/issues

1 error | 0 warnings | 0 notes

checking whether package ‘magick’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/magick.Rcheck/00install.out’ for details.

manhattanly (0.1.0)

Maintainer: Sahir Bhatnagar sahir.bhatnagar@gmail.com
Bug reports: https://github.com/sahirbhatnagar/manhattanly/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in arrange_impl(.data, dots) :
  '.Random.seed' is not an integer vector but of type 'NULL', so ignored
Warning: 'scatter' objects don't have these attributes: 'evaluate'
Valid attributes include:
'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'hoverinfo', 'stream', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'mode', 'hoveron', 'line', 'connectgaps', 'fill', 'fillcolor', 'marker', 'textposition', 'textfont', 'r', 't', 'error_y', 'error_x', 'xaxis', 'yaxis', 'xsrc', 'ysrc', 'textsrc', 'textpositionsrc', 'rsrc', 'tsrc', 'key'

Warning: 'scatter' objects don't have these attributes: 'evaluate'
... 6 lines ...
'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'hoverinfo', 'stream', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'mode', 'hoveron', 'line', 'connectgaps', 'fill', 'fillcolor', 'marker', 'textposition', 'textfont', 'r', 't', 'error_y', 'error_x', 'xaxis', 'yaxis', 'xsrc', 'ysrc', 'textsrc', 'textpositionsrc', 'rsrc', 'tsrc', 'key'

Warning: 'scatter' objects don't have these attributes: 'evaluate'
Valid attributes include:
'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'hoverinfo', 'stream', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'mode', 'hoveron', 'line', 'connectgaps', 'fill', 'fillcolor', 'marker', 'textposition', 'textfont', 'r', 't', 'error_y', 'error_x', 'xaxis', 'yaxis', 'xsrc', 'ysrc', 'textsrc', 'textpositionsrc', 'rsrc', 'tsrc', 'key'

Warning: Ignoring unknown aesthetics: text
Quitting from lines 104-105 (manhattanly.Rmd) 
Error: processing vignette 'manhattanly.Rmd' failed with diagnostics:
attempt to apply non-function
Execution halted

mapr (0.3.0)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: https://github.com/ropensci/mapr/issues

0 errors | 0 warnings | 0 notes

marked (1.1.11)

Maintainer: Jeff Laake Jeff.Laake@noaa.gov

0 errors | 0 warnings | 0 notes

marmap (0.9.5)

Maintainer: Eric Pante pante.eric@gmail.com

0 errors | 0 warnings | 0 notes

matrixStats (0.51.0)

Maintainer: Henrik Bengtsson henrikb@braju.com
Bug reports: https://github.com/HenrikBengtsson/matrixStats/issues

0 errors | 0 warnings | 0 notes

MAVIS (1.1.2)

Maintainer: W. Kyle Hamilton kyle.hamilton@gmail.com

0 errors | 0 warnings | 0 notes

MaxentVariableSelection (1.0-2)

Maintainer: "Alexander Jueterbock" Alexander-Jueterbock@web.de

0 errors | 0 warnings | 0 notes

MCMC.OTU (1.0.10)

Maintainer: Mikhail V. Matz matz@utexas.edu

0 errors | 0 warnings | 0 notes

MCMC.qpcr (1.2.2)

Maintainer: Mikhail V. Matz matz@utexas.edu

0 errors | 0 warnings | 0 notes

mcprofile (0.2-3)

Maintainer: Daniel Gerhard 00gerhard@gmail.com

0 errors | 0 warnings | 0 notes

mdsr (0.1.3)

Maintainer: Ben Baumer ben.baumer@gmail.com
Bug reports: https://github.com/beanumber/mdsr/issues

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.3Mb

medicalrisk (1.2)

Maintainer: Patrick McCormick patrick.mccormick@alum.mit.edu
Bug reports: https://github.com/patrickmdnet/medicalrisk/issues

0 errors | 0 warnings | 0 notes

medicare (0.1.0)

Maintainer: Robert Gambrel robert.gambrel@gmail.com
Bug reports: http://www.github.com/robertgambrel/medicare/issues

0 errors | 0 warnings | 0 notes

MEGENA (1.3.5-2)

Maintainer: Won-Min Song wonmin1984@gmail.com

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...

The following object is masked from 'package:base':

    union

Warning in vattrs[[name]][index] <- value :
  number of items to replace is not a multiple of replacement length
... 8 lines ...
  number of items to replace is not a multiple of replacement length
Warning in vattrs[[name]][index] <- value :
  number of items to replace is not a multiple of replacement length
Warning in vattrs[[name]][index] <- value :
  number of items to replace is not a multiple of replacement length
Warning in vattrs[[name]][index] <- value :
  number of items to replace is not a multiple of replacement length
Quitting from lines 119-127 (MEGENA_pipeline_10062016.Rmd) 
Error: processing vignette 'MEGENA_pipeline_10062016.Rmd' failed with diagnostics:
formal argument "panel.background" matched by multiple actual arguments
Execution halted

checking R code for possible problems ... NOTE
plot_module: possible error in theme(panel.background =
  element_blank(), axis.title.x = element_blank(), axis.title.y =
  element_blank(), panel.background = element_rect(fill = "white",
  colour = NA), axis.line = element_blank(), axis.ticks =
  element_blank(), axis.text = element_blank(), panel.grid.minor =
  element_blank(), panel.grid.major = element_blank(), plot.title =
  element_text(size = title.size), legend.position = "bottom",
  legend.direction = "horizontal"): formal argument "panel.background"
  matched by multiple actual arguments
... 7 lines ...
  = "bottom", legend.direction = "horizontal"): formal argument
  "panel.background" matched by multiple actual arguments
plot_subgraph: possible error in theme(panel.background =
  element_blank(), axis.title.x = element_blank(), axis.title.y =
  element_blank(), panel.background = element_rect(fill = "white",
  colour = NA), axis.line = element_blank(), axis.ticks =
  element_blank(), axis.text = element_blank(), panel.grid.minor =
  element_blank(), panel.grid.major = element_blank(), plot.title =
  element_text(size = title.size), legend.position = "bottom",
  legend.direction = "horizontal"): formal argument "panel.background"
  matched by multiple actual arguments

MendelianRandomization (0.2.0)

Maintainer: Stephen Burgess sb452@medschl.cam.ac.uk

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘MendelianRandomization-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mr_plot
> ### Title: Draw a scatter plot of the genetic associations and/or causal
> ###   estimates
> ### Aliases: mr_plot mr_plot,MRAll-method mr_plot,MRInput-method
> 
> ### ** Examples
> 
> mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse),
+   line="ivw")
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Calls: mr_plot ... plotly_build.gg -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted

MergeGUI (0.2-1)

Maintainer: Xiaoyue Cheng xycheng@iastate.edu

1 error | 0 warnings | 0 notes

checking whether package ‘MergeGUI’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/MergeGUI.Rcheck/00install.out’ for details.

merTools (0.2.1)

Maintainer: Jared E. Knowles jknowles@gmail.com
Bug reports: https://www.github.com/jknowles/merTools

0 errors | 0 warnings | 0 notes

metacoder (0.1.2)

Maintainer: Zachary Foster zacharyfoster1989@gmail.com

0 errors | 0 warnings | 0 notes

metagen (1.0)

Maintainer: Thomas W. D. Möbius kontakt@thomasmoebius.de

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
bcgVaccineData: no visible global function definition for ‘data’
bcgVaccineData: no visible global function definition for ‘qnorm’
hConfidence: no visible global function definition for ‘qchisq’
intervalEstimates_OneSgnf : crt: no visible global function definition
  for ‘qt’
intervalEstimates_OneSgnf: no visible binding for global variable
  ‘qnorm’
metagenGeneralised: no visible binding for global variable ‘quantile’
performancePointH : property: no visible global function definition for
... 15 lines ...
renderSVG: no visible global function definition for ‘svg’
renderSVG: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
  data dev.off pdf qchisq qnorm qt quantile rbinom rchisq rnorm svg
  uniroot var
Consider adding
  importFrom("grDevices", "dev.off", "pdf", "svg")
  importFrom("stats", "qchisq", "qnorm", "qt", "quantile", "rbinom",
             "rchisq", "rnorm", "uniroot", "var")
  importFrom("utils", "data")
to your NAMESPACE file.

metaheur (0.2.0)

Maintainer: Markus Vattulainen markus.vattulainen@gmail.com

0 errors | 0 warnings | 0 notes

MetaIntegrator (1.0.3)

Maintainer: Winston A. Haynes hayneswa@stanford.edu

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available:
  ‘multtest’ ‘preprocessCore’ ‘GEOquery’ ‘GEOmetadb’

Package suggested but not available for checking: ‘BiocStyle’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

metaMix (0.2)

Maintainer: Sofia Morfopoulou sofia.morfopoulou.10@ucl.ac.uk

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘Rmpi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

metaplotr (0.0.3)

Maintainer: Mehmet Gultas mehmetgultas@gmail.com

0 errors | 0 warnings | 0 notes

meteogRam (1.0)

Maintainer: Bogdan Bochenek bogdan.bochenek@uj.edu.pl

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
crosssection: no visible global function definition for
  ‘colorRampPalette’
crosssection: no visible global function definition for
  ‘filled.contour’
crosssection: no visible global function definition for ‘axis’
crosssection: no visible global function definition for ‘par’
crosssection: no visible global function definition for ‘contour’
temperatures: no visible binding for global variable ‘time’
Undefined global functions or variables:
  axis colorRampPalette contour filled.contour par time
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("graphics", "axis", "contour", "filled.contour", "par")
  importFrom("stats", "time")
to your NAMESPACE file.

Methplot (1.0)

Maintainer: Xin Yang xin.yang@cimr.cam.ac.uk

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking R code for possible problems ... NOTE
getdata: no visible global function definition for ‘read.csv’
plotdata: no visible global function definition for ‘head’
Undefined global functions or variables:
  head read.csv
Consider adding
  importFrom("utils", "head", "read.csv")
to your NAMESPACE file.

metricsgraphics (0.9.0)

Maintainer: Bob Rudis bob@rudis.net
Bug reports: https://github.com/hrbrmstr/metricsgraphics/issues

0 errors | 0 warnings | 0 notes

MGLM (0.0.7)

Maintainer: Yiwen Zhang yzhang31@ncsu.edu

0 errors | 0 warnings | 0 notes

mhtboot (1.3.3)

Maintainer: Abhirup Mallik malli066@umn.edu

0 errors | 0 warnings | 0 notes

microbenchmark (1.4-2.1)

Maintainer: Olaf Mersmann olafm@p-value.net

0 errors | 0 warnings | 1 note

checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.

micromap (1.9.2)

Maintainer: Tom Kincaid Kincaid.Tom@epa.gov

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
CatMaps: no visible binding for global variable ‘poly’
RankMaps: no visible binding for global variable ‘poly’
RankMaps: no visible global function definition for ‘median’
alterForMedian: no visible binding for global variable ‘median’
assimilatePlot: no visible global function definition for ‘gray’
bar_build: no visible global function definition for ‘median’
bar_cl_build: no visible global function definition for ‘median’
box_summary_build: no visible global function definition for ‘median’
create_DF_rank: no visible global function definition for ‘aggregate’
... 15 lines ...
print.mm: no visible global function definition for ‘png’
print.mm: no visible global function definition for ‘postscript’
print.mm: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
  aggregate dev.new dev.off gray jpeg median pdf png poly postscript
  tiff
Consider adding
  importFrom("grDevices", "dev.new", "dev.off", "gray", "jpeg", "pdf",
             "png", "postscript", "tiff")
  importFrom("stats", "aggregate", "median", "poly")
to your NAMESPACE file.

microplot (1.0-14)

Maintainer: Richard M. Heiberger rmh@temple.edu

0 errors | 0 warnings | 0 notes

MiRAnorm (1.0.0)

Maintainer: Yuda Zhu yudazhu@gmail.com

0 errors | 0 warnings | 0 notes

miscset (1.0.0)

Maintainer: Sven E. Templer sven.templer@gmail.com
Bug reports: https://github.com/setempler/miscset/issues

0 errors | 0 warnings | 0 notes

MissingDataGUI (0.2-5)

Maintainer: Xiaoyue Cheng xycheng@unomaha.edu

1 error | 0 warnings | 0 notes

checking whether package ‘MissingDataGUI’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/MissingDataGUI.Rcheck/00install.out’ for details.

mistat (1.0-4)

Maintainer: Daniele Amberti daniele.amberti@gmail.com

0 errors | 0 warnings | 1 note

checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘README.html’

mistral (2.1.0)

Maintainer: Bertrand Iooss biooss@yahoo.fr

0 errors | 0 warnings | 0 notes

MIXFIM (1.0)

Maintainer: Marie-Karelle Riviere-Jourdan eldamjh@gmail.com

0 errors | 0 warnings | 0 notes

mixOmics (6.1.1)

Maintainer: Kim-Anh Le Cao k.lecao@uq.edu.au
Bug reports: mixomics@math.univ-toulouse.fr or https://bitbucket.org/klecao/package-mixomics/issues

0 errors | 0 warnings | 0 notes

MixSIAR (3.1.7)

Maintainer: Brian Stock b1stock@ucsd.edu
Bug reports: https://github.com/brianstock/MixSIAR/issues

2 errors | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘MixSIAR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mixsiar_gui
> ### Title: Run the GUI version of MixSIAR
> ### Aliases: mixsiar_gui
> 
> ### ** Examples
... 6 lines ...
Error in mixsiar_gui() : 
  *** gWidgetsRGtk2 package not able to be loaded. ***
        If 'library('gWidgetsRGtk2')' does not work, MixSIAR GUI will not run.
        On Windows/Linux, try 'install.packages('gWidgetsRGtk2')'.
        On Mac, close R, download and install GTK+ from:
        http://r.research.att.com/#other. Then install latest X11 application
        (xQuartz) from http://xquartz.macosforge.org/landing/.

        If installing GTK+ continues to be problematic, consider using the
        script version of MixSIAR. See manual for help and examples.
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  OK: 26 SKIPPED: 0 FAILED: 9
  1. Error: Wolves ex works (@test_ex1_wolves.R#33) 
  2. Error: Geese ex works (@test_ex2_geese.R#27) 
  3. Error: Lake ex works (@test_ex3_lake.R#27) 
  4. Error: Palmyra ex works (@test_ex4_palmyra.R#27) 
  5. Error: Killer whale ex works (@test_ex5_killerwhale.R#28) 
  6. Error: Snail ex works (@test_ex6_snail.R#27) 
  7. Error: Storm-petrel ex works (@test_ex7_stormpetrel.R#27) 
  8. Error: Cladocera ex works (@test_ex8_cladocera.R#31) 
  9. Error: Isopod ex works (@test_ex9_isopod.R#27) 
  
  Error: testthat unit tests failed
  Execution halted

mizer (0.2)

Maintainer: Finlay Scott finlay.scott@jrc.ec.europa.eu

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
getFMort,MizerSim-missing: warning in get_time_elements(object,
  time_range, slot = "effort"): partial argument match of 'slot' to
  'slot_name'
getFMortGear,MizerSim-missing: warning in get_time_elements(object,
  time_range, slot = "effort"): partial argument match of 'slot' to
  'slot_name'
plotFMort,MizerSim: warning in scale_y_continuous(name = "Total fishing
  mortality", lim = c(0, max(plot_dat$value))): partial argument match
  of 'lim' to 'limits'
... 30 lines ...
plotYieldGear,MizerSim: no visible binding for global variable ‘time’
plotYieldGear,MizerSim: no visible binding for global variable ‘value’
plotYieldGear,MizerSim: no visible binding for global variable
  ‘Species’
plotYieldGear,MizerSim: no visible binding for global variable ‘gear’
Undefined global functions or variables:
  Species combn gear lm time value w
Consider adding
  importFrom("stats", "lm", "time")
  importFrom("utils", "combn")
to your NAMESPACE file.

mkin (0.9.44)

Maintainer: Johannes Ranke jranke@uni-bremen.de
Bug reports: http://github.com/jranke/mkin/issues

0 errors | 0 warnings | 0 notes

mlmc (1.0.0)

Maintainer: Louis Aslett aslett@stats.ox.ac.uk

0 errors | 0 warnings | 0 notes

mlr (2.9)

Maintainer: Bernd Bischl bernd_bischl@gmx.net
Bug reports: https://github.com/mlr-org/mlr/issues

2 errors | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘mlr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotFilterValues
> ### Title: Plot filter values using ggplot2.
> ### Aliases: plotFilterValues
> 
> ### ** Examples
> 
> fv = generateFilterValuesData(iris.task, method = "chi.squared")
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Error: .onLoad failed in loadNamespace() for 'RWekajars', details:
  call: .jinit()
  error: JNI_GetCreatedJavaVMs returned -1
Execution halted
** found \donttest examples: check also with --run-donttest

checking tests ... ERROR
Running the tests in ‘tests/run-base.R’ failed.
Last 13 lines of output:
  1. Error: NoFeaturesModel works with FilterWrapper (@test_base_NoFeaturesModel.R#30) 
  2. Error: clustering performance (@test_base_clustering.R#15) 
  3. Error: clustering performance with missing clusters (@test_base_clustering.R#27) 
  4. Error: clustering resample (@test_base_clustering.R#41) 
  5. Error: clustering benchmark (@test_base_clustering.R#52) 
  6. Error: clustering tune (@test_base_clustering.R#65) 
  7. Error: filterFeatures (@test_base_filterFeatures.R#9) 
  8. Error: plotFilterValues (@test_base_filterFeatures.R#53) 
  9. Error: args are passed down to filter methods (@test_base_filterFeatures.R#87) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted

checking package dependencies ... NOTE
Packages suggested but not available for checking: ‘C50’ ‘GPfit’ ‘RRF’

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Missing or unexported object: ‘irace::removeCandidatesMetaData’

mlxR (3.1.0)

Maintainer: Marc Lavielle Marc.Lavielle@inria.fr
Bug reports: https://github.com/MarcLavielle/mlxR/issues

0 errors | 0 warnings | 0 notes

Mobilize (2.16-4)

Maintainer: Jeroen Ooms jeroen.ooms@stat.ucla.edu

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
bin.by.date: no visible binding for global variable ‘quantile’
bin.by.date: no visible global function definition for ‘na.omit’
biplot: no visible global function definition for ‘na.omit’
biplot.character: no visible global function definition for ‘runif’
biplot.character: no visible global function definition for ‘opts’
biplot.character: no visible global function definition for
  ‘theme_blank’
distributionplot: no visible global function definition for ‘na.omit’
distributionplot.character: no visible global function definition for
... 15 lines ...
timeplot.character: no visible global function definition for ‘rnorm’
timeplot.character: no visible binding for global variable ‘text’
userplot: no visible global function definition for ‘na.omit’
Undefined global functions or variables:
  head lines na.omit opts quantile rnorm runif text theme_blank
  theme_text
Consider adding
  importFrom("graphics", "lines", "text")
  importFrom("stats", "na.omit", "quantile", "rnorm", "runif")
  importFrom("utils", "head")
to your NAMESPACE file.

modelr (0.1.0)

Maintainer: Hadley Wickham hadley@rstudio.com
Bug reports: https://github.com/hadley/modelr/issues

0 errors | 0 warnings | 0 notes

Momocs (1.1.0)

Maintainer: Vincent Bonhomme bonhomme.vincent@gmail.com
Bug reports: https://github.com/vbonhomme/Momocs/issues

0 errors | 0 warnings | 0 notes

moonBook (0.1.3)

Maintainer: Keon-Woong Moon cardiomoon@gmail.com

0 errors | 0 warnings | 2 notes

checking R code for possible problems ... NOTE
ORplot.sub: no visible global function definition for ‘par’
ORplot.sub: no visible global function definition for ‘plot’
ORplot.sub: no visible global function definition for ‘rect’
ORplot.sub: no visible global function definition for ‘abline’
ORplot.sub: no visible global function definition for ‘text’
ORplot.sub: no visible global function definition for ‘segments’
ORplot.sub: no visible global function definition for ‘points’
densityplot: no visible global function definition for ‘terms’
densityplot: no visible global function definition for ‘as.formula’
... 38 lines ...
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "abline", "legend", "lines", "par", "plot",
             "points", "rect", "segments", "text")
  importFrom("stats", "IQR", "anova", "as.formula", "chisq.test", "coef",
             "confint", "density", "fisher.test", "fivenum",
             "kruskal.test", "lm", "mad", "median", "na.omit", "resid",
             "sd", "shapiro.test", "t.test", "terms", "var.test",
             "xtabs")
  importFrom("utils", "write.csv", "write.table")
to your NAMESPACE file.

checking files in ‘vignettes’ ... NOTE
The following directory looks like a leftover from 'knitr':
  ‘figure’
Please remove from your package.

morse (2.2.0)

Maintainer: Philippe Veber philippe.veber@univ-lyon1.fr

1 error | 0 warnings | 0 notes

checking whether package ‘morse’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/morse.Rcheck/00install.out’ for details.

mosaic (0.14.4)

Maintainer: Randall Pruim rpruim@calvin.edu
Bug reports: https://github.com/ProjectMOSAIC/mosaic/issues

0 errors | 0 warnings | 2 notes

checking installed package size ... NOTE
  installed size is  9.4Mb
  sub-directories of 1Mb or more:
    R     2.0Mb
    doc   6.8Mb

checking R code for possible problems ... NOTE
mMap: no visible binding for global variable ‘facet’
mScatter: no visible binding for global variable ‘facet’
mUniplot: no visible binding for global variable ‘facet’
Undefined global functions or variables:
  facet

mosaicData (0.14.0)

Maintainer: Randall Pruim rpruim@calvin.edu

0 errors | 0 warnings | 0 notes

mousetrap (2.0.0)

Maintainer: Pascal J. Kieslich kieslich@psychologie.uni-mannheim.de
Bug reports: https://github.com/pascalkieslich/mousetrap/issues

0 errors | 0 warnings | 0 notes

moveHMM (1.2)

Maintainer: Theo Michelot tmichelot1@sheffield.ac.uk

0 errors | 0 warnings | 0 notes

mplot (0.7.9)

Maintainer: Garth Tarr garth.tarr@gmail.com

0 errors | 0 warnings | 1 note

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

mpoly (1.0.3)

Maintainer: David Kahle david.kahle@gmail.com
Bug reports: https://github.com/dkahle/mpoly/issues

0 errors | 0 warnings | 0 notes

mrMLM (1.3)

Maintainer: Yuanming Zhangsoyzhang@mail.hzau.edu.cn

1 error | 0 warnings | 0 notes

checking whether package ‘mrMLM’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/mrMLM.Rcheck/00install.out’ for details.

MRMR (0.1.4)

Maintainer: Brian A. Fannin FanninQED@Yahoo.com

0 errors | 0 warnings | 0 notes

MSCMT (1.0.0)

Maintainer: Martin Becker martin.becker@mx.uni-saarland.de

0 errors | 0 warnings | 0 notes

MSG (0.3)

Maintainer: Yihui Xie xie@yihui.name
Bug reports: https://github.com/yihui/MSG/issues

0 errors | 0 warnings | 0 notes

MSGARCH (0.17)

Maintainer: Keven Bluteau Keven.Bluteau@unine.ch

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    doc    2.5Mb
    libs   4.1Mb

mtconnectR (1.0.1)

Maintainer: Subramanyam Ravishankar subramanyam@systeminsights.com

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error: `mapped_plot` not equal to lazyLoadDBfetch(c(36596L, 320L), datafile, compressed, envhook).
  Component "layers": Component 1: Component 3: Component 2: Modes of target, current: function, environment
  Component "layers": Component 1: Component 3: Component 2: target, current do not match when deparsed
  Component "layers": Component 1: Component 7: Component 2: Modes of target, current: function, environment
  Component "layers": Component 1: Component 7: Component 2: target, current do not match when deparsed
  Component "layers": Component 1: Component 9: Component 2: Modes of target, current: function, environment
  Component "layers": Component 1: Component 9: Component 2: target, current do not match when deparsed
  Component "layers": Component 1: Component 12: Modes of target, current: function, environment
  Component "layers": Component 1: Component 12: target, current do not match when deparsed
  Component "layers": Component 2: Component 3: Component 2: Modes of target, current: fun
  testthat results ================================================================
  OK: 0 SKIPPED: 0 FAILED: 0
  Execution halted

MultiBD (0.2.0)

Maintainer: Marc A. Suchard msuchard@ucla.edu

0 errors | 0 warnings | 0 notes

multiDimBio (1.0.1)

Maintainer: Samuel V. Scarpino scarpino@utexas.edu

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘pcaMethods’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

multilevelPSA (1.2.4)

Maintainer: Jason Bryer jason@bryer.org
Bug reports: https://github.com/jbryer/multilevelPSA/issues

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
missing.plot: possible error in theme(axis.text.x = element_text(size =
  6, angle = -90, hjust = 0.5, vjust = 0.5), axis.text.x =
  element_blank(), axis.ticks = element_blank()): formal argument
  "axis.text.x" matched by multiple actual arguments

MultiMeta (0.1)

Maintainer: Dragana Vuckovic dragana.vuckovic@burlo.trieste.it

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
betas_plot: no visible global function definition for ‘cov2cor’
betas_plot: no visible global function definition for
  ‘colorRampPalette’
betas_plot: no visible global function definition for ‘pdf’
betas_plot: no visible global function definition for ‘dev.off’
mhplot: no visible global function definition for ‘read.table’
mhplot: no visible global function definition for ‘pdf’
mhplot: no visible global function definition for ‘plot’
mhplot: no visible global function definition for ‘points’
... 14 lines ...
qqplotter: no visible global function definition for ‘abline’
qqplotter: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
  abline axis colorRampPalette cov2cor dev.off median pchisq pdf plot
  points ppoints qchisq read.table write.table
Consider adding
  importFrom("grDevices", "colorRampPalette", "dev.off", "pdf")
  importFrom("graphics", "abline", "axis", "plot", "points")
  importFrom("stats", "cov2cor", "median", "pchisq", "ppoints", "qchisq")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.

multipanelfigure (0.8.3)

Maintainer: Johannes Graumann jog2030@qatar-med.cornell.edu

0 errors | 0 warnings | 0 notes

munsell (0.4.3)

Maintainer: Charlotte Wickham cwickham@gmail.com

0 errors | 0 warnings | 0 notes

musica (0.1.3)

Maintainer: Martin Hanel hanel@fzp.czu.cz

0 errors | 0 warnings | 0 notes

mvdalab (1.1)

Maintainer: Nelson Lee Afanador nelson.afanador@mvdalab.com

0 errors | 0 warnings | 0 notes

mvtboost (0.5.0)

Maintainer: Patrick Miller patrick.mil10@gmail.com
Bug reports: https://github.com/patr1ckm/mvtboost/issues

0 errors | 0 warnings | 0 notes

mwaved (1.1.4)

Maintainer: Justin Rory Wishart justin.wishart@mq.edu.au
Bug reports: https://github.com/jrwishart/mwaved/issues

1 error | 0 warnings | 0 notes

checking whether package ‘mwaved’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/mwaved.Rcheck/00install.out’ for details.

myTAI (0.4.0)

Maintainer: Hajk-Georg Drost hgd23@cam.ac.uk
Bug reports: https://github.com/HajkD/myTAI/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘edgeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

ncappc (0.2.1.1)

Maintainer: Chayan Acharya chayan.acharya@farmbio.uu.se

0 errors | 0 warnings | 0 notes

NeatMap (0.3.6.2)

Maintainer: Satwik Rajaram satwik@gmail.com

0 errors | 0 warnings | 2 notes

checking R code for possible problems ... NOTE
data.reduction: no visible global function definition for ‘prcomp’
data.reduction: no visible global function definition for ‘hclust’
data.reduction: no visible global function definition for ‘as.dist’
data.reduction: no visible global function definition for ‘cor’
data.reduction: no visible global function definition for ‘dist’
heatmap1: no visible global function definition for ‘sd’
lineplot: no visible global function definition for ‘sd’
normalize: no visible global function definition for ‘sd’
profileplot3d : ColorFunction: no visible global function definition
  for ‘rgb’
profileplot3d : ColorFunction: no visible global function definition
  for ‘colorRamp’
profileplot3d: no visible global function definition for ‘sd’
profileplot3d: no visible global function definition for ‘gray’
Undefined global functions or variables:
  as.dist colorRamp cor dist gray hclust prcomp rgb sd
Consider adding
  importFrom("grDevices", "colorRamp", "gray", "rgb")
  importFrom("stats", "as.dist", "cor", "dist", "hclust", "prcomp", "sd")
to your NAMESPACE file.

checking compiled code ... NOTE
File ‘NeatMap/libs/NeatMap.so’:
  Found ‘_rand’, possibly from ‘rand’ (C)
    Object: ‘nMDS_R.o’
  Found ‘_srand’, possibly from ‘srand’ (C)
    Object: ‘nMDS_R.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

netgen (1.3)

Maintainer: Jakob Bossek j.bossek@gmail.com
Bug reports: https://github.com/jakobbossek/netgen/issues

0 errors | 0 warnings | 0 notes

networkreporting (0.1.1)

Maintainer: Dennis M. Feehan feehan@berkeley.edu

0 errors | 0 warnings | 0 notes

NeuralNetTools (1.4.0)

Maintainer: Marcus W. Beck mbafs2012@gmail.com
Bug reports: https://github.com/fawda123/NeuralNetTools/issues

0 errors | 0 warnings | 0 notes

neuropsychology (0.2.4)

Maintainer: Dominique Makowski dom.makowski@gmail.com

0 errors | 0 warnings | 0 notes

NFP (0.99.1)

Maintainer: Yang Cao yiluheihei@gmail.com

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘graph’ ‘KEGGgraph’

Packages suggested but not available for checking:
  ‘BiocStyle’ ‘graphite’ ‘NFPdata’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

nhstplot (1.0.0)

Maintainer: Nils Myszkowski nmyszkowski@pace.edu

0 errors | 0 warnings | 0 notes

nima (0.3.0)

Maintainer: Nima Hejazi nhejazi@berkeley.edu

0 errors | 0 warnings | 0 notes

nimble (0.6-1)

Maintainer: Christopher Paciorek paciorek@stat.berkeley.edu

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is 11.9Mb
  sub-directories of 1Mb or more:
    CppCode        3.6Mb
    R              2.3Mb
    classic-bugs   1.5Mb
    include        3.7Mb

nlstimedist (1.0.1)

Maintainer: Nathan Eastwood nathan.eastwood@icloud.com
Bug reports: https://github.com/PlymouthUniversitySD/nlstimedist/issues

0 errors | 0 warnings | 0 notes

NlsyLinks (2.0.6)

Maintainer: Will Beasley wibeasley@hotmail.com
Bug reports: https://github.com/LiveOak/NlsyLinks/issues

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  8.5Mb
  sub-directories of 1Mb or more:
    data      4.3Mb
    reports   2.2Mb

nLTT (1.3.1)

Maintainer: Thijs Janzen thijsjanzen@gmail.com
Bug reports: https://github.com/richelbilderbeek/nLTT/issues

0 errors | 0 warnings | 0 notes

NMF (0.20.6)

Maintainer: Renaud Gaujoux renaud@tx.technion.ac.il
Bug reports: http://github.com/renozao/NMF/issues

0 errors | 0 warnings | 3 notes

checking package dependencies ... NOTE
Packages suggested but not available for checking: ‘RcppOctave’ ‘doMPI’

checking R code for possible problems ... NOTE
algorithm,NMFStrategyOctave: no visible global function definition for
  ‘fstop’
evar,ANY: no visible binding for global variable ‘Biobase’
nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
  variable ‘n’
nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
  variable ‘RNGobj’
rss,matrix: no visible binding for global variable ‘Biobase’
Undefined global functions or variables:
  Biobase RNGobj fstop n

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘RcppOctave’

NNTbiomarker (0.29.11)

Maintainer: Roger Day day01@pitt.edu

0 errors | 0 warnings | 0 notes

NORRRM (1.0.0)

Maintainer: Renee Gonzalez Guzman rguzman@cicese.edu.mx

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
CIPW: no visible global function definition for ‘data’
CIPW: no visible binding for global variable ‘AtomWeight’
CIPW: no visible binding for global variable ‘MinWeight’
CIPW: no visible binding for global variable ‘OxiWeight’
CIPW.trace: no visible global function definition for ‘data’
CIPW.trace: no visible binding for global variable ‘AtomWeight’
CIPW.trace: no visible binding for global variable ‘MinWeight’
CIPW.trace: no visible binding for global variable ‘OxiWeight’
Undefined global functions or variables:
  AtomWeight MinWeight OxiWeight data
Consider adding
  importFrom("utils", "data")
to your NAMESPACE file.

nparACT (0.6)

Maintainer: Christine Blume christine.blume@sbg.ac.at

0 errors | 0 warnings | 0 notes

NPflow (0.10.1)

Maintainer: Boris P. Hejblum bhejblum@hsph.harvard.edu
Bug reports: https://github.com/borishejblum/NPflow/issues

0 errors | 0 warnings | 0 notes

npregfast (1.3.0)

Maintainer: Marta Sestelo sestelo@uvigo.es
Bug reports: http://github.com/sestelo/npregfast/issues

1 error | 0 warnings | 0 notes

checking whether package ‘npregfast’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/npregfast.Rcheck/00install.out’ for details.

nullabor (0.3.1)

Maintainer: Di Cook dicook@iastate.edu

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
box_dist: no visible global function definition for ‘quantile’
calc_mean_dist: no visible global function definition for ‘filter’
n: no visible global function definition for ‘resid’
null_dist : <anonymous>: no visible global function definition for
  ‘coef’
null_lm : <anonymous>: no visible global function definition for
  ‘predict’
reg_dist: no visible global function definition for ‘coef’
reg_dist: no visible global function definition for ‘lm’
... 10 lines ...
sep_dist: no visible global function definition for ‘cutree’
sep_dist: no visible global function definition for ‘hclust’
uni_dist: no visible global function definition for ‘sd’
Undefined global functions or variables:
  coef cutree dist filter hclust lm predict quantile rbinom resid rnorm
  sd update
Consider adding
  importFrom("stats", "coef", "cutree", "dist", "filter", "hclust", "lm",
             "predict", "quantile", "rbinom", "resid", "rnorm", "sd",
             "update")
to your NAMESPACE file.

nzelect (0.2.0)

Maintainer: Peter Ellis peter.ellis2013nz@gmail.com

0 errors | 0 warnings | 0 notes

oapackage (2.0.23)

Maintainer: Pieter Thijs Eendebak pieter.eendebak@gmail.com

0 errors | 0 warnings | 0 notes

oaPlots (0.0.25)

Maintainer: Jason Waddell jason.waddell@openanalytics.eu

0 errors | 0 warnings | 0 notes

oaxaca (0.1.3)

Maintainer: Marek Hlavac hlavac@fas.harvard.edu

0 errors | 0 warnings | 0 notes

obAnalytics (0.1.0)

Maintainer: Philip Stubbings phil@parasec.net
Bug reports: https://github.com/phil8192/ob-analytics/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘obAnalytics-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotVolumePercentiles
> ### Title: Visualise available limit order book liquidity through time.
> ### Aliases: plotVolumePercentiles
> 
> ### ** Examples
... 10 lines ...
    plotVolumePercentiles => time range = 7200 secs
    plotVolumePercentiles => aggregating to mins intervals
    plotVolumePercentiles => aggregation: 2015-05-01 02:29:00 : 2015-05-01 04:29:00 by = mins
Warning: Ignoring unknown aesthetics: ymax
Warning: Ignoring unknown aesthetics: ymax
Warning in rep(yes, length.out = length(ans)) :
  'x' is NULL so the result will be NULL
Error in ifelse(data$ymax == 0, data$ymin, data$ymax) : 
  replacement has length zero
Calls: <Anonymous> ... f -> <Anonymous> -> f -> <Anonymous> -> f -> ifelse
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 535-541 (guide.Rmd) 
Error: processing vignette 'guide.Rmd' failed with diagnostics:
replacement has length zero
Execution halted

oddsratio (0.3.0)

Maintainer: Patrick Schratz patrick.schratz@gmail.com
Bug reports: https://github.com/pat-s/oddsratio/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘oddsratio-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add.oddsratio.into.plot
> ### Title: Insert odds ratios of GAM(M)s into smoothing function
> ### Aliases: add.oddsratio.into.plot
> 
> ### ** Examples
... 36 lines ...
+                                  values = c(0.4, 0.6))
>                                   
> # add or.object2 into plot                                  
> add.oddsratio.into.plot(plot.object, or.object2, or.yloc = 2.1, values.yloc = 2,
+                         line.col = "green4", text.col = "black",
+                         rect.col = "green4", rect.alpha = 0.2,
+                         line.alpha = 1, line.type = "dashed",
+                         arrow.xloc.r = 0.01, arrow.xloc.l = -0.01,
+                         arrow.length = 0.01, rect = TRUE)          
Error: Aesthetics must be either length 1 or the same as the data (1): xmin, xmax, ymin, ymax, fill, alpha
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 130-139 (function.tutorial.Rmd) 
Error: processing vignette 'function.tutorial.Rmd' failed with diagnostics:
Aesthetics must be either length 1 or the same as the data (1): xmin, xmax, ymin, ymax, fill, alpha
Execution halted

OECD (0.2.2)

Maintainer: Eric Persson expersso5@gmail.com
Bug reports: https://www.github.com/expersso/OECD/issues

0 errors | 0 warnings | 0 notes

onlineCPD (1.0)

Maintainer: Zachary Zanussi zachary9506@gmail.com

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘onlineCPD-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: findCP
> ### Title: Wisely Pick Changepoints
> ### Aliases: findCP
> 
> ### ** Examples
> 
> ## Two changepoints within \code{buffer} points:
> set.seed(5)
> y <- c(rnorm(15,0.5,0.01),0.505,0.51,0.015,0.52,rnorm(15,0.6,0.05))
> res <- offlineCPD(y)
> plot(res,buffer=10)     ## Will replace the two changepoints
Error: Aesthetics must be either length 1 or the same as the data (1): x, y, xend, yend, alpha
Execution halted

OpasnetUtils (1.2.0)

Maintainer: Teemu Rintala teemu.rintala.a@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
ComputeDependencies: no visible global function definition for ‘find’
Fetch: no visible global function definition for ‘find’
Q0.025: no visible global function definition for ‘quantile’
Q0.975: no visible global function definition for ‘quantile’
interpf: no visible global function definition for ‘qnorm’
interpf: no visible global function definition for ‘rnorm’
interpf: no visible global function definition for ‘runif’
oapply: no visible global function definition for ‘aggregate’
odebug: no visible global function definition for ‘combn’
... 8 lines ...
  ‘URLencode’
rdirichlet: no visible global function definition for ‘rgamma’
tidy: no visible global function definition for ‘reshape’
Undefined global functions or variables:
  URLencode aggregate aov as.formula combn find qnorm quantile
  read.table reshape rgamma rnorm runif
Consider adding
  importFrom("stats", "aggregate", "aov", "as.formula", "qnorm",
             "quantile", "reshape", "rgamma", "rnorm", "runif")
  importFrom("utils", "URLencode", "combn", "find", "read.table")
to your NAMESPACE file.

OpenStreetMap (0.3.3)

Maintainer: Ian Fellows ian@fellstat.com

1 error | 0 warnings | 0 notes

checking whether package ‘OpenStreetMap’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/OpenStreetMap.Rcheck/00install.out’ for details.

openVA (1.0.1)

Maintainer: Zehang Li lizehang@uw.edu

1 error | 0 warnings | 0 notes

checking whether package ‘openVA’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/openVA.Rcheck/00install.out’ for details.

optiRum (0.37.3)

Maintainer: Stephanie Locke stephanie.g.locke@gmail.com
Bug reports: https://github.com/stephlocke/optiRum/issues

0 errors | 0 warnings | 0 notes

orderedLasso (1.7)

Maintainer: Xiaotong Suo xiaotong@stanford.edu

0 errors | 0 warnings | 2 notes

checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  predict.orderedLasso predict.orderedLasso.path predict.timeLagLasso
  predict.timeLagLasso.path
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

checking R code for possible problems ... NOTE
error.bars: no visible global function definition for ‘segments’
lambda.interp: no visible global function definition for ‘approx’
orderedLasso: no visible binding for global variable ‘sd’
orderedLasso.cv: no visible binding for global variable ‘var’
plot.orderedLasso.cv: no visible global function definition for ‘par’
plot.orderedLasso.cv: no visible global function definition for ‘plot’
plot.orderedLasso.cv: no visible global function definition for ‘axis’
plot.orderedLasso.cv: no visible global function definition for ‘mtext’
plot.orderedLasso.cv: no visible global function definition for
... 12 lines ...
timeLagLasso: no visible binding for global variable ‘sd’
timeLagLasso.cv: no visible binding for global variable ‘sd’
timeLagLasso.cv: no visible binding for global variable ‘var’
timeLagLasso.path: no visible binding for global variable ‘sd’
Undefined global functions or variables:
  abline approx axis mtext par plot points sd segments var
Consider adding
  importFrom("graphics", "abline", "axis", "mtext", "par", "plot",
             "points", "segments")
  importFrom("stats", "approx", "sd", "var")
to your NAMESPACE file.

orgR (0.9.0)

Maintainer: Yi Tang yi.tang.uk@me.com

0 errors | 0 warnings | 0 notes

OriGen (1.4.3)

Maintainer: John Michael O. Ranola ranolaj@uw.edu

1 error | 0 warnings | 0 notes

checking whether package ‘OriGen’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/OriGen.Rcheck/00install.out’ for details.

osmplotr (0.2.3)

Maintainer: Mark Padgham mark.padgham@email.com
Bug reports: https://github.com/ropenscilabs/osmplotr/issues

0 errors | 0 warnings | 0 notes

OutbreakTools (0.1-14)

Maintainer: Thibaut Jombart thibautjombart@gmail.com

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘OutbreakTools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ToyOutbreakRaw
> ### Title: Raw simulated outbreak dataset
> ### Aliases: ToyOutbreakRaw
> ### Keywords: dataset
> 
... 572 lines ...
> plot(get.contacts(x, from=2, to=2.1), main="Contact network - day 2",
+      displaylabels=TRUE)
> plot(get.contacts(x, from=3, to=3.1), main="Contact network - day 3",
+      displaylabels=TRUE)
> 
> ## Mapping the outbreak (by sex) ##
> plot(x,'geo',location=c('lon','lat'),zoom=13,colorBy='Sex')
Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=51.516439,-0.171146&zoom=13&size=640x640&scale=2&maptype=terrain&language=en-EN&sensor=false
Error: GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in .local(x, ...) :
  The following sequence IDs are not in the dataset: 311, 222
Warning in .local(x, ...) :
  The following sequence IDs are not in the dataset: 311, 222
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figs/OutbreakTools-out.width==".8\\textwidth"" -> "figs/OutbreakTools-out.width___.8\\textwidth_"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  dots in figure paths replaced with _ ("figs/OutbreakTools-out_width____8//textwidth_")
Warning: The shape palette can deal with a maximum of 6 discrete values because
more than 6 becomes difficult to discriminate; you have 11. Consider
specifying shapes manually if you must have them.
Warning: Removed 58 rows containing missing values (geom_point).
Warning: `show_guide` has been deprecated. Please use `show.legend` instead.
Warning: `show_guide` has been deprecated. Please use `show.legend` instead.
Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=51.516439,-0.171146&zoom=14&size=640x640&scale=2&maptype=terrain&language=en-EN&sensor=false
Quitting from lines 1022-1023 (OutbreakTools.Rnw) 
Error: processing vignette 'OutbreakTools.Rnw' failed with diagnostics:
GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

P2C2M (0.7.6)

Maintainer: Michael Gruenstaeudl mi.gruenstaeudl@gmail.com

0 errors | 0 warnings | 2 notes

checking package dependencies ... NOTE
Packages suggested but not available for checking:
  ‘genealogicalSorting’ ‘phybase’ ‘Rmpi’

checking R code for possible problems ... NOTE
ms.exec: no visible global function definition for ‘tail’
p2c2m.readstarb: no visible global function definition for ‘head’
p2c2m.readstarb: no visible binding for global variable ‘head’
rmOutlrs: no visible global function definition for ‘boxplot.stats’
rmext: no visible global function definition for ‘tail’
rowMedians: no visible binding for global variable ‘median’
stats.acrGenes: no visible binding for global variable ‘sd’
stats.perGene: no visible binding for global variable ‘sd’
statshelpers.cv: no visible binding for global variable ‘sd’
statshelpers.qntls: no visible binding for global variable ‘quantile’
Undefined global functions or variables:
  boxplot.stats head median quantile sd tail
Consider adding
  importFrom("grDevices", "boxplot.stats")
  importFrom("stats", "median", "quantile", "sd")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.

pa (1.2-1)

Maintainer: Yang Lu yang.lu2014@gmail.com

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘grid’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
.formula.make: no visible global function definition for ‘formula’
regress: no visible global function definition for ‘lm’
regress: no visible global function definition for ‘model.matrix’
Undefined global functions or variables:
  formula lm model.matrix
Consider adding
  importFrom("stats", "formula", "lm", "model.matrix")
to your NAMESPACE file.

packcircles (0.1.1)

Maintainer: Michael Bedward michael.bedward@gmail.com

0 errors | 0 warnings | 0 notes

pagenum (1.0)

Maintainer: Kevin Wright kw.stat@gmail.com
Bug reports: https://github.com/kwstat/pagenum/issues

0 errors | 0 warnings | 0 notes

PairedData (1.0.1)

Maintainer: Stephane Champely champely@univ-lyon1.fr

0 errors | 0 warnings | 4 notes

checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  ‘MASS’ ‘gld’ ‘mvtnorm’
  Please remove these calls from your code.

checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  bonettseier.var.test.default bonettseier.var.test.paired
  grambsch.var.test.default grambsch.var.test.paired
  imam.var.test.default imam.var.test.paired levene.var.test.default
  levene.var.test.paired mcculloch.var.test.default
  mcculloch.var.test.paired sandvikolsson.var.test.default
  sandvikolsson.var.test.paired t.test.paired t.test.paired
  var.test.default var.test.paired wilcox.test.paired
  winsor.cor.test.default winsor.cor.test.paired yuen.t.test.default
  yuen.t.test.formula yuen.t.test.paired
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

checking R code for possible problems ... NOTE
bonettseier.var.test.default: no visible global function definition for
  ‘complete.cases’
bonettseier.var.test.default: no visible global function definition for
  ‘median’
bonettseier.var.test.default: no visible global function definition for
  ‘sd’
bonettseier.var.test.default: no visible global function definition for
  ‘cor’
bonettseier.var.test.default: no visible global function definition for
... 72 lines ...
summary,paired: no visible global function definition for ‘cor’
Undefined global functions or variables:
  IQR complete.cases cor cor.test dnorm integrate mad median pchisq pf
  pnorm pt qchisq qf qnorm qt rbinom reorder sd t.test terms var
  wilcox.test
Consider adding
  importFrom("stats", "IQR", "complete.cases", "cor", "cor.test",
             "dnorm", "integrate", "mad", "median", "pchisq", "pf",
             "pnorm", "pt", "qchisq", "qf", "qnorm", "qt", "rbinom",
             "reorder", "sd", "t.test", "terms", "var", "wilcox.test")
to your NAMESPACE file.

checking Rd line widths ... NOTE
Rd file 'mcculloch.var.test.Rd':
  \usage lines wider than 90 characters:
            alternative = c("two.sided", "less", "greater"),method= c("spearman","pearson", "kendall"),

Rd file 'plot.Rd':
  \usage lines wider than 90 characters:
     plot(x, groups=NULL,subjects=NULL, facet=TRUE,type=c("correlation","BA","McNeil","profile"),...)

These lines will be truncated in the PDF manual.

paleofire (1.1.9)

Maintainer: Olivier Blarquez blarquez@gmail.com

0 errors | 0 warnings | 0 notes

palettetown (0.1.1)

Maintainer: Tim Lucas timcdlucas@gmail.com

0 errors | 0 warnings | 0 notes

pAnalysis (2.0)

Maintainer: Joseph G Kreke jkreke2@gmail.com

0 errors | 0 warnings | 0 notes

pander (0.6.0)

Maintainer: Gergely Daróczi daroczig@rapporter.net
Bug reports: https://github.com/rapporter/pander/issues

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: Hmisc
Quitting from lines 13-18 (pander.Rmd) 
Error: processing vignette 'pander.Rmd' failed with diagnostics:
package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
Execution halted


checking dependencies in R code ... NOTE
Missing or unexported object: ‘rms::reVector’

ParallelTree (0.1.1)

Maintainer: Patrick O'Keefe patrick.okeefe@vanderbilt.edu

0 errors | 0 warnings | 0 notes

ParamHelpers (1.9)

Maintainer: Bernd Bischl bernd_bischl@gmx.net
Bug reports: https://github.com/berndbischl/ParamHelpers/issues

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/run-all.R’ failed.
Last 13 lines of output:
  3. Failure: convertParamSetToIrace work with vecparam (@test_convertParamSetToIrace.R#85) 
  b$b not equal to c("v", "w").
  target is NULL, current is character
  
  
  testthat results ================================================================
  OK: 1003 SKIPPED: 0 FAILED: 3
  1. Error: convertParamSetToIrace (@test_convertParamSetToIrace.R#32) 
  2. Failure: convertParamSetToIrace uses correct boundaries (@test_convertParamSetToIrace.R#69) 
  3. Failure: convertParamSetToIrace work with vecparam (@test_convertParamSetToIrace.R#85) 
  
  Error: testthat unit tests failed
  Execution halted

partialAR (1.0.5)

Maintainer: Matthew Clegg matthewcleggphd@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
estimate.rho.par: no visible global function definition for ‘var’
estimate.sigma.par: no visible global function definition for ‘sd’
estimate.sigma.par: no visible global function definition for ‘var’
fit.par: no visible global function definition for ‘sd’
fit.par.both: no visible global function definition for ‘sd’
fit.par.both: no visible global function definition for ‘median’
fit.par.both: no visible global function definition for ‘optim’
fit.par.both: no visible global function definition for ‘nlm’
fit.par.mr: no visible global function definition for ‘sd’
... 42 lines ...
  ‘is’
Undefined global functions or variables:
  approx is median nlm optim optimize qchisq quantile read.table rnorm
  rt sd var write.table
Consider adding
  importFrom("methods", "is")
  importFrom("stats", "approx", "median", "nlm", "optim", "optimize",
             "qchisq", "quantile", "rnorm", "rt", "sd", "var")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

PASenseWear (1.0)

Maintainer: Yukun Zhang yukzhang@ucalgary.ca

0 errors | 0 warnings | 0 notes

PASWR2 (1.0.2)

Maintainer: Alan T. Arnholt arnholtat@appstate.edu

0 errors | 0 warnings | 0 notes

patPRO (1.1.0)

Maintainer: Geoffrey D Hannigan ghanni@upenn.edu

0 errors | 0 warnings | 1 note

checking DESCRIPTION meta-information ... NOTE
Checking should be performed on sources prepared by ‘R CMD build’.

pauwels2014 (1.0)

Maintainer: Edouard Pauwels pauwelsed@gmail.com

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.

checking R code for possible problems ... NOTE
add_noise: no visible global function definition for ‘rnorm’
estimate_risk_dream6 : <anonymous>: no visible global function
  definition for ‘var’
generate_sample: no visible global function definition for ‘rnorm’
generate_sample: no visible global function definition for ‘runif’
sample_function: no visible global function definition for ‘runif’
sample_function : <anonymous>: no visible global function definition
  for ‘var’
sample_function_multi_mod_weight: no visible global function definition
  for ‘runif’
sample_function_multi_mod_weight : <anonymous>: no visible global
  function definition for ‘var’
sample_function_single_mod: no visible global function definition for
  ‘runif’
Undefined global functions or variables:
  rnorm runif var
Consider adding
  importFrom("stats", "rnorm", "runif", "var")
to your NAMESPACE file.

PAWL (0.5)

Maintainer: Pierre Jacob pierre.jacob.work@gmail.com

0 errors | 0 warnings | 4 notes

checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: no function found corresponding to methods exports from ‘PAWL’ for: ‘show’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.

checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  ‘foreach’ ‘ggplot2’ ‘reshape’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘foreach’ ‘ggplot2’ ‘methods’ ‘mvtnorm’ ‘reshape’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
ConvertResults: no visible global function definition for ‘%do%’
ConvertResults: no visible global function definition for ‘foreach’
PlotAllVar: no visible global function definition for ‘melt’
PlotAllVar: no visible global function definition for ‘ggplot’
PlotAllVar: no visible global function definition for ‘aes’
PlotAllVar: no visible global function definition for ‘geom_line’
PlotAllVar: no visible global function definition for ‘facet_wrap’
PlotAllVar: no visible global function definition for ‘theme’
PlotAllVar: no visible global function definition for ‘element_text’
... 74 lines ...
  geom_density2d geom_line geom_point geom_step geom_vline ggplot hist
  labs mahalanobis melt new quantile rgamma rmultinom rmvnorm rnorm
  runif stat_bin2d tail theme xlab ylab ylim
Consider adding
  importFrom("graphics", "abline", "hist")
  importFrom("methods", "new")
  importFrom("stats", "cov", "mahalanobis", "quantile", "rgamma",
             "rmultinom", "rnorm", "runif")
  importFrom("utils", "tail")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

checking Rd line widths ... NOTE
Rd file 'createAdaptiveRandomWalkProposal.Rd':
  \usage lines wider than 90 characters:
         createAdaptiveRandomWalkProposal(nchains, targetdimension, adaptiveproposal, adaptationrate, sigma_init)

These lines will be truncated in the PDF manual.

PBImisc (1.0)

Maintainer: Przemyslaw Biecek przemyslaw.biecek@gmail.com

0 errors | 0 warnings | 0 notes

pcadapt (3.0.3)

Maintainer: Keurcien Luu keurcien.luu@imag.fr

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘qvalue’

pcaPA (2.0.2)

Maintainer: Carlos A. Arias caariasr22@gmail.com

1 error | 0 warnings | 0 notes

checking whether package ‘pcaPA’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/pcaPA.Rcheck/00install.out’ for details.

pcrcoal (1.2.0)

Maintainer: Botond Sipos sbotond@gmail.com

0 errors | 0 warnings | 0 notes

pcrsim (1.0.1)

Maintainer: Oskar Hansson oskar.hansson@fhi.no
Bug reports: https://github.com/OskarHansson/pcrsim/issues

1 error | 0 warnings | 0 notes

checking whether package ‘pcrsim’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/pcrsim.Rcheck/00install.out’ for details.

PDQutils (0.1.5)

Maintainer: Steven E. Pav shabbychef@gmail.com
Bug reports: https://github.com/shabbychef/PDQutils/issues

0 errors | 0 warnings | 0 notes

PedCNV (0.1)

Maintainer: Meiling Liu meiling.sta@gmail.com

0 errors | 0 warnings | 3 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.

checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘Rcpp’ ‘RcppArmadillo’ ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
AssoTestProc: no visible global function definition for ‘rbinom’
AssoTestProc: no visible global function definition for ‘princomp’
AssoTestProc: no visible global function definition for ‘loadings’
AssoTestProc: no visible global function definition for ‘lm’
CNVtypeAnay: no visible global function definition for ‘cov’
ClusProc: no visible global function definition for ‘princomp’
ClusProc: no visible global function definition for ‘prcomp’
ClusProc0: no visible global function definition for ‘kmeans’
ClusProc0: no visible global function definition for ‘cov’
... 12 lines ...
plot.clust: no visible global function definition for ‘title’
plot.clust: no visible global function definition for ‘mtext’
plot.clust: no visible global function definition for ‘text’
Undefined global functions or variables:
  aes_string barplot cor cov geom_histogram kmeans lm loadings mtext
  pchisq prcomp princomp qplot rbinom text title var
Consider adding
  importFrom("graphics", "barplot", "mtext", "text", "title")
  importFrom("stats", "cor", "cov", "kmeans", "lm", "loadings", "pchisq",
             "prcomp", "princomp", "rbinom", "var")
to your NAMESPACE file.

pems.utils (0.2.17.8)

Maintainer: Karl Ropkins k.ropkins@its.leeds.ac.uk

0 errors | 0 warnings | 0 notes

peptider (0.2.2)

Maintainer: Eric Hare erichare@iastate.edu
Bug reports: https://github.com/heike/peptider/issues

0 errors | 0 warnings | 0 notes

pequod (0.0-5)

Maintainer: Alberto Mirisola alberto.mirisola@gmail.com

0 errors | 0 warnings | 0 notes

performanceEstimation (1.1.0)

Maintainer: Luis Torgo ltorgo@dcc.fc.up.pt
Bug reports: https://github.com/ltorgo/performanceEstimation/issues

0 errors | 0 warnings | 0 notes

permubiome (1.1)

Maintainer: Alfonso Benitez-Paez abenitez@iata.csic.es

0 errors | 0 warnings | 0 notes

perry (0.2.0)

Maintainer: Andreas Alfons alfons@ese.eur.nl

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
hasMethod: no visible global function definition for ‘getS3method’
Undefined global functions or variables:
  getS3method
Consider adding
  importFrom("utils", "getS3method")
to your NAMESPACE file.

perspectev (1.1)

Maintainer: Kenneth B. Hoehn perspectev@gmail.com

0 errors | 0 warnings | 0 notes

PGRdup (0.2.2.1)

Maintainer: J. Aravind j.aravind@icar.gov.in

0 errors | 1 warning | 2 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
ERROR: Duplicated records found in prim.key field
ERROR: NULL records found in prim.key field
OK: No duplicated records found in prim.key field
OK: No NULL records found in prim.key field
Fuzzy matching
Phonetic matching
Semantic matching
Fuzzy matching
Phonetic matching
Semantic matching
Quitting from lines 995-1061 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
formal argument "axis.ticks.y" matched by multiple actual arguments
Execution halted


checking R code for possible problems ... NOTE
ViewProbDup: possible error in theme(panel.background =
  element_rect(fill = "transparent"), axis.title.x =
  element_text(colour = "black", margin = margin(20, 0, 20, 0)),
  axis.ticks.x = element_blank(), axis.text.x = element_blank(),
  axis.ticks.y = element_blank(), axis.line = element_line(colour =
  NA), axis.line.y = element_line(colour = "black"), axis.ticks.y =
  element_line(colour = "black"), axis.text.y = element_text(colour =
  "black"), axis.title.y = element_blank(), plot.margin = unit(c(0,
  0.5, 0.5, 0.5), "cm"), panel.grid = element_blank()): formal argument
  "axis.ticks.y" matched by multiple actual arguments

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘RecordLinkage’

PhaseType (0.1.3)

Maintainer: Louis Aslett louis@maths.tcd.ie

0 errors | 0 warnings | 3 notes

checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘ggplot2’ ‘reshape’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
plot.phtMCMC: no visible global function definition for ‘ggplot’
plot.phtMCMC: no visible global function definition for ‘melt’
plot.phtMCMC: no visible global function definition for ‘geom_line’
plot.phtMCMC: no visible global function definition for ‘aes_string’
plot.phtMCMC: no visible global function definition for ‘geom_smooth’
plot.phtMCMC: no visible global function definition for ‘facet_wrap’
plot.phtMCMC: no visible global function definition for ‘ggtitle’
plot.phtMCMC: no visible global function definition for ‘xlab’
plot.phtMCMC: no visible global function definition for ‘ylab’
plot.phtMCMC: no visible global function definition for ‘geom_density’
Undefined global functions or variables:
  aes_string facet_wrap geom_density geom_line geom_smooth ggplot
  ggtitle melt xlab ylab

checking compiled code ... NOTE
File ‘PhaseType/libs/PhaseType.so’:
  Found ‘_rand’, possibly from ‘rand’ (C)
    Object: ‘LJMA_arms.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

photobiologyInOut (0.4.12)

Maintainer: Pedro J. Aphalo pedro.aphalo@helsinki.fi
Bug reports: https://bitbucket.org/aphalo/photobiologyinout/

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Read 3 items
Read 16 items
Quitting from lines 180-181 (user-guide.Rnw) 
Error: processing vignette 'user-guide.Rnw' failed with diagnostics:
StatPeaks was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

photobiologyLamps (0.4.1)

Maintainer: Pedro J. Aphalo pedro.aphalo@helsinki.fi
Bug reports: https://bitbucket.org/aphalo/photobiologylamps/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 41-43 (data-catalogue.Rmd) 
Error: processing vignette 'data-catalogue.Rmd' failed with diagnostics:
StatPeaks was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

photobiologyLEDs (0.4.2)

Maintainer: Pedro J. Aphalo pedro.aphalo@helsinki.fi
Bug reports: https://bitbucket.org/aphalo/photobiologyleds/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 50-52 (data-catalogue.Rmd) 
Error: processing vignette 'data-catalogue.Rmd' failed with diagnostics:
StatPeaks was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

photobiologyPlants (0.4.0)

Maintainer: Pedro J. Aphalo pedro.aphalo@helsinki.fi
Bug reports: https://bitbucket.org/aphalo/photobiologyplants

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 79-81 (dataplotsPlants.Rnw) 
Error: processing vignette 'dataplotsPlants.Rnw' failed with diagnostics:
StatColorGuide was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

Phxnlme (1.0.0)

Maintainer: Chay Ngee Lim limxx356@umn.edu

0 errors | 0 warnings | 0 notes

phylopath (0.2.0)

Maintainer: Wouter van der Bijl wouter.van.der.bijl@zoologi.su.se
Bug reports: https://github.com/Ax3man/phylopath/issues

0 errors | 0 warnings | 0 notes

phylosim (3.0.2)

Maintainer: Botond Sipos sbotond@gmail.com

0 errors | 0 warnings | 0 notes

physiology (0.2.2)

Maintainer: Jack O. Wasey jack@jackwasey.com
Bug reports: https://github.com/jackwasey/physiology/issues

0 errors | 0 warnings | 0 notes

pid (0.36)

Maintainer: Kevin Dunn kevin.dunn@mcmaster.ca
Bug reports: https://bitbucket.org/kevindunn/r-pid

0 errors | 0 warnings | 0 notes

pinbasic (0.1.0)

Maintainer: Andreas Recktenwald a.recktenwald@mx.uni-saarland.de

0 errors | 0 warnings | 0 notes

pipe.design (0.4)

Maintainer: Michael Sweeting mjs212@medschl.cam.ac.uk

0 errors | 0 warnings | 0 notes

pitchRx (1.8.2)

Maintainer: Carson Sievert cpsievert1@gmail.com
Bug reports: http://github.com/cpsievert/pitchRx/issues

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘ggsubplot’

PKgraph (1.7)

Maintainer: Xiaoyong Sun johnsunx1@gmail.com

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘rggobi’

Depends: includes the non-default packages:
  ‘RGtk2’ ‘gWidgetsRGtk2’ ‘cairoDevice’ ‘lattice’ ‘rggobi’ ‘ggplot2’
  ‘proto’
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

PKreport (1.5)

Maintainer: Xiaoyong Sun johnsunx1@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
PKadjust: no visible binding for global variable ‘jpeg’
PKadjust: no visible binding for global variable ‘bmp’
PKadjust: no visible binding for global variable ‘png’
PKadjust: no visible binding for global variable ‘tiff’
PKadjust: no visible binding for global variable ‘dev.new’
PKadjust: no visible global function definition for ‘dev.off’
PKfigure: no visible global function definition for ‘dev.cur’
PKfigure: no visible global function definition for ‘dev.off’
PKoutput: no visible global function definition for ‘heatmap’
... 17 lines ...
initialize,nonmem: no visible global function definition for
  ‘read.table’
Undefined global functions or variables:
  bmp browseURL dev.cur dev.new dev.off formula heatmap jpeg
  packageDescription png quantile read.table tiff
Consider adding
  importFrom("grDevices", "bmp", "dev.cur", "dev.new", "dev.off", "jpeg",
             "png", "tiff")
  importFrom("stats", "formula", "heatmap", "quantile")
  importFrom("utils", "browseURL", "packageDescription", "read.table")
to your NAMESPACE file.

planar (1.6)

Maintainer: Baptiste Auguie baptiste.auguie@gmail.com

0 errors | 0 warnings | 0 notes

PlasmaMutationDetector (1.5.2)

Maintainer: Yves Rozenholc yves.rozenholc@parisdescartes.fr

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘VariantAnnotation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

platetools (0.0.2)

Maintainer: Scott Warchal s.warchal@sms.ed.ac.uk

0 errors | 0 warnings | 0 notes

playwith (0.9-54)

Maintainer: Felix Andrews felix@nfrac.org

1 error | 0 warnings | 1 note

checking whether package ‘playwith’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/playwith.Rcheck/00install.out’ for details.

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘latticist’

plotluck (1.0.0)

Maintainer: Stefan Schroedl stefan.schroedl@gmx.de
Bug reports: https://github.com/stefan-schroedl/plotluck/issues

1 error | 1 warning | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Factor variable price has too many levels (11602), truncating to 30
  *** 2D box/violin plot ***
  Factor variable rating has too many levels (91), truncating to 30
  Error in match.arg(opts$geom, choices.geom) : 
    'arg' should be one of "spine", "heat", "auto"
  Calls: test_check ... print -> plotluck -> determine.plot.type.1 -> match.arg
  In addition: Warning message:
  'switch' is deprecated.
  Use 'strip.position' instead.
  See help("Deprecated") 
  testthat results ================================================================
  OK: 0 SKIPPED: 0 FAILED: 0
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 83-85 (plotluck.Rmd) 
Error: processing vignette 'plotluck.Rmd' failed with diagnostics:
'sum' not defined for ordered factors
Execution halted

plotly (4.5.2)

Maintainer: Carson Sievert cpsievert1@gmail.com
Bug reports: https://github.com/ropensci/plotly/issues

2 errors | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘plotly-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: style
> ### Title: Modify trace(s)
> ### Aliases: style
> 
> ### ** Examples
> 
> 
> p <- qplot(data = mtcars, wt, mpg, geom = c("point", "smooth"))
> # keep the hover info for points, but remove it for the line/ribbon
> style(p, hoverinfo = "none", traces = c(2, 3))
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Calls: style ... plotly_build.gg -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  1. Error: factor levels determine tick order (@test-cookbook-axes.R#28) 
  2. Error: ylim hides points (@test-cookbook-axes.R#36) 
  3. Error: scale_y(limits) hides points (@test-cookbook-axes.R#41) 
  4. Error: Using coord_cartesian zooms into the area (@test-cookbook-axes.R#49) 
  5. Error: A scatterplot with regular (linear) axis scaling (@test-cookbook-axes.R#64) 
  6. Error: log2 scaling of the y axis (with visually-equal spacing) (@test-cookbook-axes.R#71) 
  7. Error: log2 coordinate transformation with visually-diminishing spacing (@test-cookbook-axes.R#77) 
  8. Error: log2 transform with labels (@test-cookbook-axes.R#86) 
  9. Error: scale_y_log10 (@test-cookbook-axes.R#92) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted

plotMElm (0.1.4)

Maintainer: Christopher Gandrud christopher.gandrud@gmail.com
Bug reports: https://github.com/christophergandrud/plotMElm/issues

0 errors | 0 warnings | 0 notes

PlotPrjNetworks (1.0.0)

Maintainer: Joaquin Bienvenido Ordieres Mere j.ordieres@upm.es

0 errors | 0 warnings | 0 notes

plotROC (2.0.1)

Maintainer: Michael C Sachs sachsmc@gmail.com
Bug reports: http://github.com/sachsmc/plotROC/issues

0 errors | 0 warnings | 0 notes

plspm (0.4.7)

Maintainer: Gaston Sanchez gaston.stat@gmail.com
Bug reports: https://github.com/gastonstat/plspm/issues

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
alpha: no visible binding for global variable ‘sd’
dummy.G: no visible global function definition for ‘var’
get_GQI: no visible binding for global variable ‘sd’
get_GQI: no visible global function definition for ‘cor’
get_PLSR: no visible binding for global variable ‘var’
get_PLSR: no visible global function definition for ‘var’
get_PLSR: no visible global function definition for ‘cor’
get_PLSR_NA : <anonymous>: no visible global function definition for
  ‘var’
... 52 lines ...
summary.plspm: no visible global function definition for ‘cor’
unidim: no visible binding for global variable ‘sd’
unidim: no visible global function definition for ‘princomp’
Undefined global functions or variables:
  cor cov cutree lines lm na.omit par plot princomp pt quantile sd
  title var
Consider adding
  importFrom("graphics", "lines", "par", "plot", "title")
  importFrom("stats", "cor", "cov", "cutree", "lm", "na.omit",
             "princomp", "pt", "quantile", "sd", "var")
to your NAMESPACE file.

pmc (1.0.2)

Maintainer: Carl Boettiger cboettig@gmail.com
Bug reports: https://github.com/cboettig/pmc/issues

0 errors | 0 warnings | 0 notes

pogit (1.1.0)

Maintainer: Michaela Dvorzak m.dvorzak@gmx.at

0 errors | 0 warnings | 0 notes

pointRes (1.1.2)

Maintainer: Marieke van der Maaten-Theunissen marieketheunissen@gmail.com

0 errors | 0 warnings | 0 notes

pollstR (1.4.0)

Maintainer: Jeffrey B. Arnold jeffrey.arnold@gmail.com
Bug reports: https://github.com/rOpenGov/pollstR/issues

0 errors | 0 warnings | 0 notes

pomp (1.9)

Maintainer: Aaron A. King kingaa@umich.edu
Bug reports: http://github.com/kingaa/pomp/issues

0 errors | 0 warnings | 0 notes

PopED (0.3.1)

Maintainer: Andrew C. Hooker andrew.hooker@farmbio.uu.se
Bug reports: https://github.com/andrewhooker/PopED/issues

0 errors | 0 warnings | 0 notes

popEpi (0.4.0)

Maintainer: Joonas Miettinen joonas.miettinen@cancer.fi
Bug reports: https://github.com/WetRobot/popEpi/issues

0 errors | 0 warnings | 0 notes

PopGenReport (2.2.2)

Maintainer: Bernd Gruber bernd.gruber@canberra.edu.au

0 errors | 0 warnings | 0 notes

popgraph (1.4)

Maintainer: Rodney J. Dyer rjdyer@vcu.edu

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.

checking R code for possible problems ... NOTE
as.popgraph: no visible global function definition for ‘is’
centroid_distance: no visible global function definition for ‘is’
centroid_variance: no visible global function definition for ‘is’
centroid_variance: no visible global function definition for ‘cov’
decorate_graph: no visible global function definition for ‘is’
overlay_popgraph: no visible global function definition for ‘is’
overlay_popgraph: no visible global function definition for ‘lines’
overlay_popgraph: no visible global function definition for ‘points’
overlay_popgraph: no visible global function definition for ‘text’
... 12 lines ...
  ‘write.csv’
Undefined global functions or variables:
  cor.test cov is lines points prcomp qchisq read.table text var
  write.csv
Consider adding
  importFrom("graphics", "lines", "points", "text")
  importFrom("methods", "is")
  importFrom("stats", "cor.test", "cov", "prcomp", "qchisq", "var")
  importFrom("utils", "read.table", "write.csv")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

poppr (2.2.1)

Maintainer: Zhian N. Kamvar kamvarz@science.oregonstate.edu
Bug reports: https://github.com/grunwaldlab/poppr/issues

0 errors | 0 warnings | 0 notes

popReconstruct (1.0-4)

Maintainer: "Mark C. Wheldon" mwheldon@aut.ac.nz

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
estMod.rinvGamma.mar29: no visible global function definition for
  ‘rgamma’
life.expectancy.stationary: no visible global function definition for
  ‘head’
life.expectancy.stationary: no visible global function definition for
  ‘tail’
log.lhood.mar29: no visible global function definition for ‘dnorm’
log.post.mar29: no visible global function definition for ‘dnorm’
popRecon.sampler: no visible global function definition for ‘rnorm’
popRecon.sampler: no visible global function definition for ‘runif’
Undefined global functions or variables:
  dnorm head rgamma rnorm runif tail
Consider adding
  importFrom("stats", "dnorm", "rgamma", "rnorm", "runif")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.

PortfolioEffectHFT (1.7)

Maintainer: Andrey Kostin andrey.kostin@portfolioeffect.com

1 error | 0 warnings | 0 notes

checking whether package ‘PortfolioEffectHFT’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/PortfolioEffectHFT.Rcheck/00install.out’ for details.

powerbydesign (1.0.3)

Maintainer: Frank Papenmeier frank.papenmeier@uni-tuebingen.de

0 errors | 0 warnings | 0 notes

PPtreeViz (1.3.0)

Maintainer: Eun-Kyung Lee lee.eunk@gmail.com

0 errors | 0 warnings | 0 notes

prcbench (0.5.2)

Maintainer: Takaya Saito takaya.saito@outlook.com
Bug reports: https://github.com/takayasaito/prcbench/issues

2 errors | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘prcbench-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ToolAUCCalculator
> ### Title: R6 class of the AUCCalculator tool
> ### Aliases: ToolAUCCalculator
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## Initialization
> toolauccalc <- ToolAUCCalculator$new()
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Error in rJava::.jinit() : JNI_GetCreatedJavaVMs returned -1
Calls: <Anonymous> ... .get_java_obj -> withVisible -> _f -> <Anonymous> -> .External
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  1. Error: run_benchmark (@test_main_benchmark.R#32) 
  2. Error: run_benchmark: testset (@test_main_benchmark.R#58) 
  3. Error: run_benchmark: toolset (@test_main_benchmark.R#84) 
  4. Error: run_benchmark: times (@test_main_benchmark.R#131) 
  5. Error: run_benchmark: unit (@test_main_benchmark.R#166) 
  6. Error: run_evalcurve (@test_main_evalcurves.R#6) 
  7. Error: run_evalcurve: testset (@test_main_evalcurves.R#19) 
  8. Error: run_evalcurve: toolset (@test_main_evalcurves.R#32) 
  9. Error: run_evalcurve testscores (@test_main_evalcurves.R#57) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Quitting from lines 65-70 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
JNI_GetCreatedJavaVMs returned -1
Execution halted

precintcon (2.3.0)

Maintainer: Lucas Venezian Povoa lucasvenez@gmail.com
Bug reports: https://github.com/lucasvenez/precintcon/issues

0 errors | 0 warnings | 0 notes

precrec (0.5.2)

Maintainer: Takaya Saito takaya.saito@outlook.com
Bug reports: https://github.com/takayasaito/precrec/issues

0 errors | 0 warnings | 0 notes

predictionInterval (1.0.0)

Maintainer: David Stanley dstanley@uoguelph.ca

0 errors | 0 warnings | 0 notes

predictmeans (0.99)

Maintainer: Dongwen Luo dongwen.luo@agresearch.co.nz

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
CookD: no visible global function definition for ‘update’
CookD: no visible global function definition for ‘model.frame’
CookD : <anonymous>: no visible global function definition for ‘update’
CookD: no visible global function definition for ‘dev.new’
CookD: no visible global function definition for ‘text’
CookD: no visible global function definition for ‘points’
Kmatrix: no visible global function definition for ‘slot’
Kmatrix: no visible global function definition for ‘model.matrix’
Kmatrix: no visible global function definition for ‘terms’
... 128 lines ...
             "legend", "lines", "par", "plot", "points", "text", "title")
  importFrom("methods", "slot")
  importFrom("stats", "anova", "as.formula", "coef", "delete.response",
             "family", "fitted", "formula", "ftable", "lm.influence",
             "loess.smooth", "model.frame", "model.matrix", "na.omit",
             "na.pass", "p.adjust", "ppoints", "predict", "pt", "ptukey",
             "qnorm", "qqline", "qqnorm", "qt", "resid", "residuals",
             "terms", "update", "vcov", "xtabs")
  importFrom("utils", "edit")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

PredictTestbench (1.1.1)

Maintainer: Neeraj Bokde neerajdhanraj@gmail.com
Bug reports: https://github.com/neerajdhanraj/PredictTestbench/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 43-46 (my-vignette.Rmd) 
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
argument "pred" is missing, with no default
Execution halted

PReMiuM (3.1.3)

Maintainer: Silvia Liverani liveranis@gmail.com

0 errors | 0 warnings | 0 notes

preprocomb (0.3.0)

Maintainer: Markus Vattulainen markus.vattulainen@gmail.com
Bug reports: https://github.com/mvattulainen/preprocomb/issues

0 errors | 0 warnings | 0 notes

preprosim (0.2.0)

Maintainer: Markus Vattulainen markus.vattulainen@gmail.com
Bug reports: https://github.com/mvattulainen/preprosim/issues

0 errors | 0 warnings | 0 notes

preproviz (0.2.0)

Maintainer: Markus Vattulainen markus.vattulainen@gmail.com
Bug reports: https://github.com/mvattulainen/preproviz/issues

0 errors | 0 warnings | 0 notes

preText (0.4.4)

Maintainer: Matthew J. Denny mdenny@psu.edu

0 errors | 0 warnings | 1 note

checking dependencies in R code ... NOTE
Missing or unexported object: ‘cowplot::switch_axis_position’

prevR (3.3)

Maintainer: Joseph Larmarange joseph.larmarange@ird.fr

0 errors | 0 warnings | 1 note

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘sparr’

pRF (1.2)

Maintainer: Ankur Chakravarthy ankur.chakravarthy.10@ucl.ac.uk

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘multtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

primerTree (1.0.3)

Maintainer: Jim Hester james.f.hester@gmail.com

0 errors | 0 warnings | 0 notes

prism (0.0.7)

Maintainer: Hart Edmund Edmund.m.hart@gmail.com
Bug reports: http://github.com/ropensci/prism/issues

0 errors | 0 warnings | 0 notes

PRISMA (0.2-5)

Maintainer: Tammo Krueger tammokrueger@googlemail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
corpusToPrisma: no visible global function definition for
  ‘packageVersion’
estimateDimension : calcConfidence: no visible global function
  definition for ‘qnorm’
filterDataByTestAndCor: no visible global function definition for
  ‘p.adjust’
plot.prismaDimension: no visible binding for global variable ‘var’
plotMatrixFactor: no visible global function definition for
  ‘as.dendrogram’
... 14 lines ...
Undefined global functions or variables:
  as.dendrogram cutree dist gray hclust new p.adjust packageVersion
  pnorm prcomp qnorm read.table rnorm var
Consider adding
  importFrom("grDevices", "gray")
  importFrom("methods", "new")
  importFrom("stats", "as.dendrogram", "cutree", "dist", "hclust",
             "p.adjust", "pnorm", "prcomp", "qnorm", "rnorm", "var")
  importFrom("utils", "packageVersion", "read.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

productplots (0.1.1)

Maintainer: Hadley Wickham hadley@rstudio.com
Bug reports: https://github.com/hadley/productplots/issues

0 errors | 0 warnings | 0 notes

profileR (0.3-3)

Maintainer: Christopher David Desjardins cddesjardins@gmail.com

0 errors | 0 warnings | 0 notes

profr (0.3.1)

Maintainer: Hadley Wickham h.wickham@gmail.com
Bug reports: https://github.com/hadley/profr/issues

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
'library' or 'require' call to ‘ggplot2’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking R code for possible problems ... NOTE
.simplify : <anonymous>: no visible binding for global variable ‘hist’
.simplify : <anonymous>: no visible binding for global variable ‘start’
.simplify: no visible binding for global variable ‘start’
.simplify: no visible binding for global variable ‘end’
ggplot.profr: no visible global function definition for ‘ggplot’
ggplot.profr: no visible global function definition for ‘geom_rect’
ggplot.profr: no visible global function definition for ‘aes’
ggplot.profr: no visible binding for global variable ‘start’
ggplot.profr: no visible binding for global variable ‘end’
... 9 lines ...
plot.profr: no visible binding for global variable ‘time’
plot.profr: no visible global function definition for ‘text’
profr: no visible global function definition for ‘Rprof’
Undefined global functions or variables:
  Rprof aes end geom_rect geom_text ggplot hist plot rect
  scale_x_continuous scale_y_continuous start text time
Consider adding
  importFrom("graphics", "hist", "plot", "rect", "text")
  importFrom("stats", "end", "start", "time")
  importFrom("utils", "Rprof")
to your NAMESPACE file.

profvis (0.3.2)

Maintainer: Winston Chang winston@rstudio.com

0 errors | 0 warnings | 0 notes

ProgGUIinR (0.0-4)

Maintainer: John Verzani verzani@math.csi.cuny.edu

0 errors | 0 warnings | 3 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘qtbase’

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking R code for possible problems ... NOTE
browseRGtk2Files: no visible global function definition for ‘gtkWindow’
browseRGtk2Files: no visible global function definition for ‘gtkVBox’
browseRGtk2Files: no visible global function definition for
  ‘gtkToolbar’
browseRGtk2Files: no visible global function definition for ‘gtkHPaned’
browseRGtk2Files: no visible global function definition for ‘gtkFrame’
browseRGtk2Files: no visible global function definition for
  ‘gtkTextView’
browseRGtk2Files: no visible global function definition for
... 168 lines ...
  gtkScrolledWindow gtkSeparatorToolItem gtkStatusbar gtkTextBuffer
  gtkTextView gtkToolButton gtkToolbar gtkTreeView gtkTreeViewColumn
  gtkTypeGetSignals gtkVBox gtkVBoxNew gtkWindow gwindow help
  rGtkDataFrame svalue svalue<- tcl tclvalue tkbind tkconfigure
  tkdelete tkget tkgrid tkgrid.columnconfigure tkgrid.rowconfigure
  tkinsert tkmenu tkpack tksee tkset tktag.add tktag.configure
  tktag.remove tktext tktoplevel tkwm.title tkxview ttkbutton ttkframe
  ttklabel ttkpanedwindow ttkscrollbar ttktreeview visible<-
Consider adding
  importFrom("utils", "apropos", "help")
to your NAMESPACE file.

ProjectTemplate (0.7)

Maintainer: Kenton White jkentonwhite@gmail.com
Bug reports: https://github.com/johnmyleswhite/ProjectTemplate/issues

0 errors | 0 warnings | 2 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘RODBC’

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

proportion (1.2.3)

Maintainer: Rajeswaran Viswanathan v.rajeswaran@gmail.com
Bug reports: https://github.com/RajeswaranV/proportion/issues

0 errors | 1 warning | 1 note

checking sizes of PDF files under ‘inst/doc’ ... WARNING
  ‘gs+qpdf’ made some significant size reductions:
     compacted ‘proportion.pdf’ from 689Kb to 387Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files

checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘PropCIs’, ‘BlakerCI’, ‘prevalence’

propr (2.0.4)

Maintainer: Thomas Quinn contacttomquinn@gmail.com
Bug reports: http://github.com/tpq/propr/issues

0 errors | 0 warnings | 0 notes

proteomics (0.2)

Maintainer: Thomas W. D. Möbius kontakt@thomasmoebius.de

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
addIonSatistics: no visible binding for global variable ‘median’
adjustOne: no visible binding for global variable ‘median’
attachModifications: no visible global function definition for
  ‘na.omit’
avrgLoadingCalculation: no visible binding for global variable ‘median’
channelResponses : estimate: no visible binding for global variable
  ‘var’
responseStatisics : func: no visible global function definition for
  ‘aggregate’
testing: no visible global function definition for ‘aov’
testingOneshot: no visible global function definition for ‘anova’
testingTukey: no visible global function definition for ‘TukeyHSD’
Undefined global functions or variables:
  TukeyHSD aggregate anova aov median na.omit var
Consider adding
  importFrom("stats", "TukeyHSD", "aggregate", "anova", "aov", "median",
             "na.omit", "var")
to your NAMESPACE file.

PRROC (1.1)

Maintainer: Jan Grau grau@informatik.uni-halle.de

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
plot.PRROC: no visible global function definition for ‘hsv’
plot.PRROC: no visible global function definition for ‘grey’
plot.PRROC: no visible global function definition for ‘lcm’
plot.PRROC: no visible global function definition for ‘layout’
plot.PRROC: no visible global function definition for ‘plot’
plot.PRROC: no visible global function definition for ‘polygon’
plot.PRROC: no visible global function definition for ‘lines’
plot.PRROC: no visible global function definition for ‘segments’
plot.PRROC: no visible global function definition for ‘par’
plot.PRROC: no visible global function definition for ‘image’
plot.PRROC: no visible global function definition for ‘axis’
Undefined global functions or variables:
  axis grey hsv image layout lcm lines par plot polygon segments
Consider adding
  importFrom("grDevices", "grey", "hsv")
  importFrom("graphics", "axis", "image", "layout", "lcm", "lines",
             "par", "plot", "polygon", "segments")
to your NAMESPACE file.

PSAboot (1.1.4)

Maintainer: Jason Bryer jason@bryer.org
Bug reports: https://github.com/jbryer/PSAboot/issues

0 errors | 0 warnings | 0 notes

PSCBS (0.61.0)

Maintainer: Henrik Bengtsson henrikb@braju.com
Bug reports: https://github.com/HenrikBengtsson/PSCBS/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘DNAcopy’

Package suggested but not available for checking: ‘aroma.light’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

pscore (0.1-2)

Maintainer: Joshua F. Wiley jwiley.psych@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
mahalanobisComposite: no visible global function definition for
  ‘princomp’
prepareComposite: no visible global function definition for ‘cov’
winsorizor : f: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  cov princomp quantile
Consider adding
  importFrom("stats", "cov", "princomp", "quantile")
to your NAMESPACE file.

psd (1.0-1)

Maintainer: Andrew J. Barbour andy.barbour@gmail.com
Bug reports: https://github.com/abarbour/psd/issues

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
ctap_loess.default: no visible global function definition for
  ‘loess.control’
lines.spec: no visible global function definition for ‘plot’
pgram_compare.amt: no visible global function definition for ‘as.ts’
pgram_compare.amt: no visible global function definition for
  ‘frequency’
pgram_compare.amt: no visible global function definition for
  ‘spec.pgram’
pgram_compare.amt: no visible global function definition for ‘par’
... 41 lines ...
  abline acf as.ts frequency head is.ts layout legend lines lm
  loess.control mtext par pchisq plot qchisq residuals spec.pgram start
  tail title ts var
Consider adding
  importFrom("graphics", "abline", "layout", "legend", "lines", "mtext",
             "par", "plot", "title")
  importFrom("stats", "acf", "as.ts", "frequency", "is.ts", "lm",
             "loess.control", "pchisq", "qchisq", "residuals",
             "spec.pgram", "start", "ts", "var")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.

pseval (1.3.0)

Maintainer: Michael C Sachs sachsmc@gmail.com

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘printr’

PTXQC (0.80.14)

Maintainer: Chris Bielow chris.bielow@mdc-berlin.de
Bug reports: https://github.com/cbielow/PTXQC/issues

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc        3.5Mb
    examples   2.3Mb

pwr (1.2-0)

Maintainer: Helios De Rosario helios.derosario@gmail.com

0 errors | 0 warnings | 0 notes

pxweb (0.6.3)

Maintainer: Mans Magnusson mons.magnusson@gmail.com
Bug reports: https://github.com/rOpenGov/pxweb/issues

0 errors | 0 warnings | 0 notes

QCAtools (0.2.2)

Maintainer: Jirka Lewandowski jirka.lewandowski@wzb.eu

0 errors | 0 warnings | 0 notes

QCSimulator (0.0.1)

Maintainer: Tinniam V Ganeshtvganesh.85@gmail.com

0 errors | 0 warnings | 0 notes

qdap (2.2.5)

Maintainer: Tyler Rinker tyler.rinker@gmail.com
Bug reports: http://github.com/trinker/qdap/issues

1 error | 0 warnings | 0 notes

checking whether package ‘qdap’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/qdap.Rcheck/00install.out’ for details.

qgraph (1.4.0)

Maintainer: Sacha Epskamp mail@sachaepskamp.com

0 errors | 0 warnings | 0 notes

qicharts (0.5.1)

Maintainer: Jacob Anhoej jacob@anhoej.net

0 errors | 0 warnings | 0 notes

quadrupen (0.2-4)

Maintainer: Julien Chiquet julien.chiquet@genopole.cnrs.fr

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
crossval: no visible global function definition for ‘modifyList’
stability: no visible global function definition for ‘modifyList’
stability : bloc.stability: no visible global function definition for
  ‘runif’
plot,cvpen: no visible binding for global variable ‘lambda1’
plot,cvpen: no visible binding for global variable ‘lambda2’
plot,cvpen: no visible global function definition for ‘quantile’
plot,cvpen: no visible binding for global variable ‘serr’
plot,cvpen: no visible binding for global variable ‘xval’
plot,cvpen: no visible binding for global variable ‘lambda.choice’
plot,quadrupen: no visible binding for global variable ‘coefficients’
plot,quadrupen: no visible binding for global variable ‘variables’
plot,quadrupen: no visible binding for global variable ‘var’
plot,quadrupen: no visible binding for global variable ‘coef’
plot,stability.path: no visible binding for global variable ‘variables’
plot,stability.path: no visible binding for global variable ‘var’
Undefined global functions or variables:
  coef coefficients lambda.choice lambda1 lambda2 modifyList quantile
  runif serr var variables xval
Consider adding
  importFrom("stats", "coef", "coefficients", "quantile", "runif", "var")
  importFrom("utils", "modifyList")
to your NAMESPACE file.

QualInt (1.0.0)

Maintainer: Lixi Yu lixi-yu@uiowa.edu

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
alphaf: no visible global function definition for ‘pchisq’
alphaf: no visible global function definition for ‘dbinom’
conout: no visible global function definition for ‘sd’
ibgaout: no visible global function definition for ‘qnorm’
ibgaout: no visible global function definition for ‘pnorm’
plot.qualint: no visible global function definition for ‘qnorm’
powerval: no visible global function definition for ‘rnorm’
powerval: no visible global function definition for ‘qnorm’
powerval: no visible global function definition for ‘pnorm’
... 9 lines ...
surout: no visible global function definition for ‘tail’
surout: no visible global function definition for ‘coef’
Undefined global functions or variables:
  coef dbinom gray pchisq plot pnorm qnorm rnorm sd tail
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "plot")
  importFrom("stats", "coef", "dbinom", "pchisq", "pnorm", "qnorm",
             "rnorm", "sd")
  importFrom("utils", "tail")
to your NAMESPACE file.

qualvar (0.1.0)

Maintainer: Joel Gombin joel.gombin@gmail.com

0 errors | 0 warnings | 0 notes

quanteda (0.9.8.5)

Maintainer: Kenneth Benoit kbenoit@lse.ac.uk
Bug reports: https://github.com/kbenoit/quanteda/issues

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
      as.dist, dist
  
  The following object is masked from 'package:base':
  
      as.matrix
  
  testthat results ================================================================
  OK: 240 SKIPPED: 1 FAILED: 2
  1. Failure: test plot.kwic facet order parameter (@testPlots.R#70) 
  2. Failure: test plot.kwic keeps order of keywords passed (@testPlots.R#81) 
  
  Error: testthat unit tests failed
  Execution halted

QuantumClone (0.16.8.19)

Maintainer: Paul Deveau paul.deveau@curie.fr
Bug reports: https://github.com/DeveauP/QuantumClone/issues

0 errors | 0 warnings | 0 notes

quickpsy (0.1.4)

Maintainer: Linares Daniel danilinares@gmail.com

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘quickpsy-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotcurves
> ### Title: Plot the curves
> ### Aliases: plotcurves
> 
> ### ** Examples
> 
> library(MPDiR) # contains the Vernier data
> fit <- quickpsy(Vernier, Phaseshift, NumUpward, N,
+                 grouping = .(Direction, WaveForm, TempFreq), B = 5)
> plotcurves(fit)
Error: Aesthetics must be either length 1 or the same as the data (8): ymin, ymax, colour, x
Execution halted

quickReg (1.0.0)

Maintainer: Xikun Han hanxikun2014@163.com
Bug reports: Xikun Han hanxikun2014@163.com

0 errors | 0 warnings | 1 note

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘PredictABEL’

qwraps2 (0.2.2)

Maintainer: Peter DeWitt dewittpe@gmail.com

0 errors | 0 warnings | 0 notes

R2admb (0.7.13)

Maintainer: Ben Bolker bolker@mcmaster.ca

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
AIC.admb: no visible global function definition for ‘deviance’
AIC.admb: no visible global function definition for ‘coef’
check_section : make_names: no visible global function definition for
  ‘na.omit’
compile_admb: no visible global function definition for ‘head’
confint.admb: no visible global function definition for ‘coef’
confint.admb: no visible global function definition for ‘qnorm’
confint.admb: no visible binding for global variable ‘quantile’
dat_write: no visible global function definition for ‘write.table’
... 18 lines ...
Consider adding
  importFrom("stats", "coef", "deviance", "na.omit", "pnorm",
             "printCoefmat", "qnorm", "quantile", "vcov")
  importFrom("utils", "count.fields", "head", "read.table",
             "write.table")
to your NAMESPACE file.

Found the following calls to attach():
File ‘R2admb/R/check_section.R’:
  attach(R_list, name = "R_list", warn.conflicts = FALSE)
See section ‘Good practice’ in ‘?attach’.

r2glmm (0.1.0)

Maintainer: Byron Jaeger byron.jaeger@gmail.com
Bug reports: https://github.com/bcjaeger/r2glmm/issues

0 errors | 0 warnings | 0 notes

R6 (2.2.0)

Maintainer: Winston Chang winston@stdout.org

0 errors | 0 warnings | 0 notes

radiant.basics (0.6.0)

Maintainer: Vincent Nijs radiant@rady.ucsd.edu
Bug reports: https://github.com/radiant-rstats/radiant.basics/issues

0 errors | 0 warnings | 0 notes

radiant.data (0.6.0)

Maintainer: Vincent Nijs radiant@rady.ucsd.edu
Bug reports: https://github.com/radiant-rstats/radiant.data/issues

0 errors | 0 warnings | 0 notes

radiant.model (0.6.0)

Maintainer: Vincent Nijs radiant@rady.ucsd.edu
Bug reports: https://github.com/radiant-rstats/radiant.model/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘radiant.model-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.model.predict
> ### Title: Plot method for model.predict functions
> ### Aliases: plot.model.predict
> 
> ### ** Examples
> 
> regress("diamonds", "price", c("carat","clarity")) %>%
+   predict(pred_cmd = "carat = 1:10") %>%
+   plot(xvar = "carat")
> logistic("titanic", "survived", c("pclass","sex","age"), lev = "Yes") %>%
+   predict(pred_cmd="pclass=levels(pclass), sex=levels(sex), age=seq(0,100,20)") %>%
+   plot(xvar = "age", color = "sex", facet_col = "pclass")
Error in rep(yes, length.out = length(ans)) : 
  attempt to replicate an object of type 'closure'
Calls: %>% ... <Anonymous> -> plot -> plot.model.predict -> ifelse
Execution halted

radiant.multivariate (0.6.0)

Maintainer: Vincent Nijs radiant@rady.ucsd.edu
Bug reports: https://github.com/radiant-rstats/radiant.multivariate/issues

0 errors | 0 warnings | 0 notes

rags2ridges (2.1.1)

Maintainer: Carel F.W. Peeters cf.peeters@vumc.nl

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Packages suggested but not available for checking: ‘KEGGgraph’ ‘graph’

ragtop (0.5)

Maintainer: Brian K. Boonstra ragtop@boonstra.org

0 errors | 0 warnings | 0 notes

raincpc (0.4)

Maintainer: Gopi Goteti my.ration.shop@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
cpc_get_rawdata: no visible global function definition for
  ‘download.file’
Undefined global functions or variables:
  download.file
Consider adding
  importFrom("utils", "download.file")
to your NAMESPACE file.

rAltmetric (0.6)

Maintainer: Karthik Ram karthik.ram@gmail.com
Bug reports: https://github.com/ropensci/rAltmetric/issues/

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
altmetric_data: no visible global function definition for ‘is’
plot.altmetric: no visible global function definition for ‘is’
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

RAM (1.2.1.3)

Maintainer: Wen Chen Wen.Chen@agr.gc.ca
Bug reports: https://bitbucket.org/Wen_Chen/ram_releases/issues/

0 errors | 0 warnings | 2 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘Heatplus’

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘Heatplus’

randomizeR (1.3)

Maintainer: Diane Uschner duschner@ukaachen.de

0 errors | 0 warnings | 0 notes

randomUniformForest (1.1.5)

Maintainer: Saip Ciss saip.ciss@wanadoo.fr

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
HuberDist: no visible global function definition for ‘median’
MDSscale: no visible global function definition for ‘plot’
OOBquantiles : <anonymous>: no visible global function definition for
  ‘quantile’
OOBquantiles : <anonymous>: no visible global function definition for
  ‘sd’
OOBquantiles: no visible global function definition for ‘quantile’
OOBquantiles: no visible global function definition for ‘plot’
bCICore: no visible global function definition for ‘quantile’
... 185 lines ...
Consider adding
  importFrom("grDevices", "dev.new", "dev.off", "graphics.off",
             "heat.colors")
  importFrom("graphics", "abline", "barplot", "grid", "legend",
             "mosaicplot", "par", "persp", "plot", "points", "title")
  importFrom("stats", "aggregate", "cor", "dist", "kmeans", "lm",
             "median", "model.frame", "model.matrix", "model.response",
             "na.omit", "pbinom", "predict", "qnorm", "quantile",
             "rnorm", "runif", "sd")
  importFrom("utils", "head", "memory.limit")
to your NAMESPACE file.

rangeMapper (0.3-0)

Maintainer: Mihai Valcu valcu@orn.mpg.de

0 errors | 0 warnings | 0 notes

rangemodelR (1.0.1)

Maintainer: Aniruddha Marathe aniruddha.pravin.marathe@gmail.com

0 errors | 0 warnings | 0 notes

raptr (0.0.1)

Maintainer: Jeffrey O Hanson jeffrey.hanson@uqconnect.edu.au
Bug reports: https://github.com/jeffreyhanson/raptr/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘hypervolume’ ‘gdalUtils’

Packages suggested but not available for checking: ‘gurobi’ ‘rgurobi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

rasterVis (0.40)

Maintainer: Oscar Perpinan Lamigueiro oscar.perpinan@gmail.com
Bug reports: https://github.com/oscarperpinan/rastervis/issues

0 errors | 0 warnings | 0 notes

rattle (4.1.0)

Maintainer: Graham Williams Graham.Williams@togaware.com

0 errors | 0 warnings | 3 notes

checking package dependencies ... NOTE
Packages suggested but not available for checking:
  ‘graph’ ‘RBGL’ ‘rggobi’ ‘RODBC’ ‘pkgDepTools’ ‘Rgraphviz’

checking installed package size ... NOTE
  installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data   2.5Mb
    etc    1.9Mb
    po     1.2Mb

checking dependencies in R code ... NOTE

(R:37892): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()

raw (0.1.2)

Maintainer: Brian A. Fannin FanninQED@yahoo.com

0 errors | 0 warnings | 0 notes

rbefdata (0.3.5)

Maintainer: Claas-Thido Pfaff claas-thido.pfaff@idiv-biodiversity.de

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
bef.get.attachments: no visible global function definition for
  ‘read.csv’
bef.get.attachments: no visible global function definition for
  ‘flush.console’
bef.get.attachments_for: no visible global function definition for
  ‘read.csv’
bef.get.attachments_for: no visible global function definition for
  ‘flush.console’
bef.get.categories_for: no visible binding for global variable ‘id’
... 30 lines ...
bef.portal.get.datasets.for_keyword : <anonymous>: no visible global
  function definition for ‘read.csv’
bef.portal.get.datasets.for_proposal: no visible global function
  definition for ‘read.csv’
upload_file: no visible global function definition for ‘write.csv’
Undefined global functions or variables:
  browseURL flush.console id read.csv write.csv
Consider adding
  importFrom("utils", "browseURL", "flush.console", "read.csv",
             "write.csv")
to your NAMESPACE file.

rbison (0.5.0)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: https://github.com/ropensci/rbison/issues

0 errors | 0 warnings | 0 notes

rbokeh (0.5.0)

Maintainer: Ryan Hafen rhafen@gmail.com
Bug reports: https://github.com/bokeh/rbokeh/issues

0 errors | 0 warnings | 0 notes

rchess (0.1)

Maintainer: Joshua Kunst jbkunst@gmail.com
Bug reports: https://github.com/jbkunst/rchess/issues

0 errors | 0 warnings | 0 notes

rclinicaltrials (1.4.1)

Maintainer: Michael C Sachs sachsmc@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
clinicaltrials_download: no visible global function definition for
  ‘unzip’
Undefined global functions or variables:
  unzip
Consider adding
  importFrom("utils", "unzip")
to your NAMESPACE file.

RcmdrPlugin.KMggplot2 (0.2-3)

Maintainer: Triad sou. triadsou@gmail.com

0 errors | 0 warnings | 0 notes

RcmdrPlugin.MA (0.0-2)

Maintainer: A. C. Del Re acdelre@gmail.com

0 errors | 0 warnings | 0 notes

RCMIP5 (1.2.0)

Maintainer: Kathe Todd-Brown ktoddbrown@gmail.com

0 errors | 0 warnings | 0 notes

rddtools (0.4.0)

Maintainer: Bastiaan Quast bquast@gmail.com
Bug reports: https://github.com/bquast/RDDtools/issues

0 errors | 0 warnings | 0 notes

RDML (0.9-1)

Maintainer: Konstantin A. Blagodatskikh k.blag@yandex.ru

0 errors | 0 warnings | 0 notes

rdpla (0.1.0)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: https://github.com/ropensci/rdpla/issues

0 errors | 0 warnings | 0 notes

RDS (0.7-7)

Maintainer: Mark S. Handcock handcock@stat.ucla.edu

0 errors | 0 warnings | 0 notes

reda (0.2.1)

Maintainer: Wenjie Wang wenjie.2.wang@uconn.edu
Bug reports: https://github.com/wenjie2wang/reda/issues

0 errors | 0 warnings | 0 notes

refund (0.1-16)

Maintainer: Lei Huang huangracer@gmail.com

0 errors | 0 warnings | 0 notes

refund.shiny (0.2.0)

Maintainer: Julia Wrobel jw3134@cumc.columbia.edu

0 errors | 0 warnings | 0 notes

rem (1.1.2)

Maintainer: Laurence Brandenberger laurence.brandenberger@eawag.ch

0 errors | 0 warnings | 0 notes

repijson (0.1.0)

Maintainer: Andy South southandy@gmail.com

0 errors | 0 warnings | 0 notes

replicationInterval (2.0.1)

Maintainer: David Stanley dstanley@uoguelph.ca

0 errors | 0 warnings | 0 notes

ReporteRs (0.8.7)

Maintainer: David Gohel david.gohel@lysis-consultants.fr
Bug reports: https://github.com/davidgohel/ReporteRs/issues

1 error | 0 warnings | 0 notes

checking whether package ‘ReporteRs’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/ReporteRs.Rcheck/00install.out’ for details.

reproducer (0.1.6)

Maintainer: Lech Madeyski lech.madeyski@gmail.com

0 errors | 0 warnings | 0 notes

reval (2.0.0)

Maintainer: Michael C Koohafkan michael.koohafkan@gmail.com
Bug reports: https://github.com/mkoohafkan/reval/issues

0 errors | 0 warnings | 0 notes

rex (1.1.1)

Maintainer: Jim Hester james.f.hester@gmail.com
Bug reports: https://github.com/kevinushey/rex/issues

0 errors | 0 warnings | 0 notes

rfigshare (0.3.7)

Maintainer: Carl Boettiger cboettig@gmail.com
Bug reports: https://github.com/ropensci/rfigshare/issues

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
fs_author_ids : <anonymous>: no visible global function definition for
  ‘select.list’
fs_download : <anonymous>: no visible global function definition for
  ‘download.file’
Undefined global functions or variables:
  download.file select.list
Consider adding
  importFrom("utils", "download.file", "select.list")
to your NAMESPACE file.

RFinfer (0.2.0)

Maintainer: Cole Brokamp cole.brokamp@gmail.com
Bug reports: https://github.com/cole-brokamp/RFinfer/issues

0 errors | 0 warnings | 0 notes

rfisheries (0.2)

Maintainer: Karthik Ram karthik.ram@gmail.com
Bug reports: http://www.github.com/ropensci/rfisheries/issues/new

0 errors | 0 warnings | 0 notes

RFmarkerDetector (1.0.1)

Maintainer: Piergiorgio Palla piergiorgio.palla@diee.unica.it

0 errors | 0 warnings | 0 notes

rfordummies (0.1.2)

Maintainer: Andrie de Vries apdevries@gmail.com
Bug reports: https://github.com/andrie/rfordummies/issues

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘rfordummies-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: saveElements
> ### Title: Saves a copy of the periodic table of elements as excel or csv
> ###   file.
> ### Aliases: saveElements
> 
> ### ** Examples
> 
> saveElements(file.path(tempdir(), "elements.xlsx"))
Loading required namespace: XLConnect
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Failed with error:  ‘.onLoad failed in loadNamespace() for 'XLConnectJars', details:
  call: .jinit()
  error: JNI_GetCreatedJavaVMs returned -1
’
Error in saveElements(file.path(tempdir(), "elements.xlsx")) : 
  Unable to create excel file. Install the XLConnect package and try again.
Execution halted

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

rfPermute (2.1.5)

Maintainer: Eric Archer eric.archer@noaa.gov
Bug reports: https://github.com/EricArcher/rfPermute/issues

0 errors | 0 warnings | 0 notes

rgbif (0.9.5)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: https://github.com/ropensci/rgbif/issues

0 errors | 0 warnings | 0 notes

RGraphics (2.0-14)

Maintainer: Paul Murrell paul@stat.auckland.ac.nz

0 errors | 0 warnings | 3 notes

checking package dependencies ... NOTE
Packages suggested but not available for checking:
  ‘graph’ ‘hyperdraw’ ‘hypergraph’ ‘rggobi’ ‘Rgraphviz’ ‘SVGAnnotation’

checking installed package size ... NOTE
  installed size is  9.6Mb
  sub-directories of 1Mb or more:
    extra   9.4Mb

checking dependencies in R code ... NOTE

(R:44269): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

RImagePalette (0.1.1)

Maintainer: Joel Carlson jnkcarlson@gmail.com

0 errors | 0 warnings | 0 notes

rinat (0.1.4)

Maintainer: Edmund Hart edmund.m.hart@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
get_inat_obs: no visible global function definition for ‘read.csv’
get_inat_obs_project: no visible global function definition for
  ‘read.csv’
get_inat_obs_user: no visible global function definition for ‘read.csv’
inat_handle: no visible binding for global variable ‘data’
Undefined global functions or variables:
  data read.csv
Consider adding
  importFrom("utils", "data", "read.csv")
to your NAMESPACE file.

rivr (1.2)

Maintainer: Michael C Koohafkan michael.koohafkan@gmail.com
Bug reports: https://github.com/mkoohafkan/rivr/issues

0 errors | 0 warnings | 0 notes

RJafroc (0.1.1)

Maintainer: Xuetong Zhai xuetong.zhai@gmail.com

1 error | 0 warnings | 0 notes

checking whether package ‘RJafroc’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/RJafroc.Rcheck/00install.out’ for details.

RmarineHeatWaves (0.13.1)

Maintainer: Albertus J. Smit albertus.smit@gmail.com

0 errors | 0 warnings | 0 notes

rmcfs (1.1.2)

Maintainer: Michal Draminski mdramins@ipipan.waw.pl

1 error | 0 warnings | 0 notes

checking whether package ‘rmcfs’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/rmcfs.Rcheck/00install.out’ for details.

rmetasim (3.0.5)

Maintainer: Allan Strand stranda@cofc.edu

0 errors | 0 warnings | 0 notes

rms (5.0-0)

Maintainer: Frank E Harrell Jr f.harrell@vanderbilt.edu

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required and available but unsuitable version: ‘survival’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

RndTexExams (1.4)

Maintainer: Marcelo Perlin marceloperlin@gmail.com

0 errors | 0 warnings | 0 notes

rnoaa (0.6.5)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: http://www.github.com/ropensci/rnoaa/issues

0 errors | 0 warnings | 0 notes

rnpn (0.1.0)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com

0 errors | 0 warnings | 0 notes

rnrfa (1.2)

Maintainer: Claudia Vitolo cvitolodev@gmail.com
Bug reports: https://github.com/cvitolo/rnrfa/issues

0 errors | 0 warnings | 0 notes

robCompositions (2.0.2)

Maintainer: Matthias Templ templ@tuwien.ac.at

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in warn_if_args_exist(list(...)) :
  Extra arguments: 'colour', 'alpha', 'shape' are being ignored.  If these are meant to be aesthetics, submit them using the 'mapping' variable within ggpairs with ggplot2::aes or ggplot2::aes_string.
Warning: `panel.margin` is deprecated. Please use `panel.spacing` property instead
Quitting from lines 905-906 (imputation.Rnw) 
Error: processing vignette 'imputation.Rnw' failed with diagnostics:
only defined on a data frame with all numeric variables
Execution halted


checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘StatDA’

robmed (0.1.1)

Maintainer: Andreas Alfons alfons@ese.eur.nl

0 errors | 0 warnings | 0 notes

robustbase (0.92-6)

Maintainer: Martin Maechler maechler@stat.math.ethz.ch

0 errors | 0 warnings | 1 note

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘robustX’

RobustEM (1.0)

Maintainer: Aishat Aloba adetokaloba@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
cluster_em_outlier: no visible global function definition for ‘qchisq’
jth_dsty: no visible global function definition for ‘mahalanobis’
k_means: no visible global function definition for ‘kmeans’
mix_rcm: no visible global function definition for ‘median’
Undefined global functions or variables:
  kmeans mahalanobis median qchisq
Consider adding
  importFrom("stats", "kmeans", "mahalanobis", "median", "qchisq")
to your NAMESPACE file.

robustHD (0.5.1)

Maintainer: Andreas Alfons alfons@ese.eur.nl

0 errors | 0 warnings | 0 notes

robustlmm (1.8)

Maintainer: Manuel Koller koller.manuel@gmail.com

0 errors | 0 warnings | 0 notes

rollply (0.5.0)

Maintainer: Alexandre Genin alex@lecairn.org
Bug reports: https://github.com/alexgenin/rollply

0 errors | 0 warnings | 0 notes

ropenaq (0.1.3)

Maintainer: Maëlle Salmon maelle.salmon@yahoo.se
Bug reports: http://github.com/ropenscilabs/ropenaq/issues

0 errors | 0 warnings | 0 notes

rorutadis (0.4.1)

Maintainer: Krzysztof Ciomek k.ciomek@gmail.com

0 errors | 0 warnings | 0 notes

rotations (1.5)

Maintainer: Bryan Stanfill bstanfill2003@gmail.com
Bug reports: https://github.com/stanfill/rotationsC/issues

0 errors | 0 warnings | 0 notes

rpdo (0.2.0)

Maintainer: Joe Thorley joe@poissonconsulting.ca

0 errors | 0 warnings | 0 notes

rpf (0.53)

Maintainer: Joshua Pritikin jpritikin@pobox.com

0 errors | 0 warnings | 0 notes

rplexos (1.1.8)

Maintainer: Clayton Barrows clayton.barrows@nrel.gov
Bug reports: https://github.com/NREL/rplexos/issues

0 errors | 0 warnings | 0 notes

rplos (0.6.0)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: https://github.com/ropensci/rplos/issues

0 errors | 0 warnings | 0 notes

RPPanalyzer (1.4.3)

Maintainer: Astrid Wachter astrid.wachter@med.uni-goettingen.de

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘limma’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

rPref (1.1)

Maintainer: Patrick Roocks mail@p-roocks.de

0 errors | 0 warnings | 2 notes

checking package dependencies ... NOTE
Packages suggested but not available for checking: ‘graph’ ‘Rgraphviz’

checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.

rprev (0.2.2)

Maintainer: Stuart Lacy stuart.lacy@york.ac.uk

0 errors | 0 warnings | 0 notes

rpsftm (1.0.1)

Maintainer: Simon Bond simon.bond@addenbrookes.nhs.uk

0 errors | 0 warnings | 0 notes

rrepast (0.5.0)

Maintainer: Antonio Prestes Garcia antonio.pgarcia@alumnos.upm.es

1 error | 0 warnings | 0 notes

checking whether package ‘rrepast’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/rrepast.Rcheck/00install.out’ for details.

RSA (0.9.10)

Maintainer: Felix Schönbrodt felix@nicebread.de

0 errors | 1 warning | 0 notes

checking whether package ‘RSA’ can be installed ... WARNING
Found the following significant warnings:
  Warning: loading Rplot failed
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/RSA.Rcheck/00install.out’ for details.

rSARP (1.0.0)

Maintainer: John Hutcheson jacknx8a@gmail.com

0 errors | 0 warnings | 0 notes

RSDA (1.3)

Maintainer: Oldemar Rodriguez oldemar.rodriguez@ucr.ac.cr

0 errors | 0 warnings | 0 notes

rSPACE (1.2.0)

Maintainer: Martha Ellis martha.ellis@gmail.com
Bug reports: http://github.com/mmellis/rSPACE/issues

0 errors | 0 warnings | 0 notes

RSSL (0.6.1)

Maintainer: Jesse Krijthe jkrijthe@gmail.com
Bug reports: http://www.github.com/jkrijthe/RSSL

0 errors | 0 warnings | 0 notes

rstan (2.12.1)

Maintainer: Ben Goodrich benjamin.goodrich@columbia.edu
Bug reports: https://github.com/stan-dev/rstan/issues/

1 error | 0 warnings | 0 notes

checking whether package ‘rstan’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/rstan.Rcheck/00install.out’ for details.

rstanarm (2.12.1)

Maintainer: Ben Goodrich benjamin.goodrich@columbia.edu
Bug reports: https://github.com/stan-dev/rstanarm/issues

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘rstanarm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.stanreg
> ### Title: Plot method for stanreg objects
> ### Aliases: plot.stanreg
> 
> ### ** Examples
... 75 lines ...
> # Intervals and point estimates
> plot(fit) + 
+ ggplot2::ggtitle("Posterior medians \n with 80% and 95% credible intervals")
'pars' not specified. Showing first 10 parameters by default.
ci_level: 0.8 (80% intervals)
outer_level: 0.95 (95% intervals)
Error in if (e1$inherit.blank) return(e2) else return(e1) : 
  argument is of length zero
Calls: <Anonymous> ... FUN -> element_render -> calc_element -> Reduce -> f
Execution halted
** found \donttest examples: check also with --run-donttest

checking installed package size ... NOTE
  installed size is  8.7Mb
  sub-directories of 1Mb or more:
    doc    1.3Mb
    libs   6.6Mb

RStoolbox (0.1.6)

Maintainer: Benjamin Leutner benjamin.leutner@uni-wuerzburg.de
Bug reports: https://github.com/bleutner/RStoolbox/issues

0 errors | 0 warnings | 0 notes

rsvd (0.6)

Maintainer: N. Benjamin Erichson nbe@st-andrews.ac.uk
Bug reports: https://github.com/Benli11/rSVD

0 errors | 0 warnings | 0 notes

rsvg (1.0)

Maintainer: Jeroen Ooms jeroen.ooms@stat.ucla.edu
Bug reports: https://github.com/jeroenooms/rsvg/issues

1 error | 0 warnings | 0 notes

checking whether package ‘rsvg’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/rsvg.Rcheck/00install.out’ for details.

rtematres (0.2)

Maintainer: Claas-Thido Pfaff claas-thido.pfaff@idiv-biodiversity.de

0 errors | 0 warnings | 0 notes

rtf (0.4-11)

Maintainer: Michael E. Schaffer mschaff@gmail.com

0 errors | 0 warnings | 2 notes

checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  addHeader.RTF addNewLine.RTF addPageBreak.RTF addParagraph.RTF
  addPlot.RTF addPng.RTF addSessionInfo.RTF addTOC.RTF addTable.RTF
  addText.RTF addTrellisObject.RTF decreaseIndent.RTF done.RTF
  endParagraph.RTF increaseIndent.RTF setFontSize.RTF
  startParagraph.RTF view.RTF
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

checking R code for possible problems ... NOTE
.forest.plot: no visible global function definition for ‘par’
.forest.plot: no visible global function definition for ‘plot’
.forest.plot: no visible global function definition for ‘abline’
.forest.plot: no visible global function definition for ‘arrows’
.forest.plot: no visible global function definition for ‘points’
.forest.plot.scale: no visible global function definition for ‘par’
.forest.plot.scale: no visible global function definition for ‘plot’
.forest.plot.scale: no visible global function definition for ‘axTicks’
.forest.plot.scale : <anonymous>: no visible global function definition
... 9 lines ...
addSessionInfo.RTF: no visible global function definition for
  ‘sessionInfo’
Undefined global functions or variables:
  abline arrows axTicks dev.off lines par plot png points sessionInfo
  text
Consider adding
  importFrom("grDevices", "dev.off", "png")
  importFrom("graphics", "abline", "arrows", "axTicks", "lines", "par",
             "plot", "points", "text")
  importFrom("utils", "sessionInfo")
to your NAMESPACE file.

rtide (0.0.2)

Maintainer: Joe Thorley joe@poissonconsulting.ca
Bug reports: https://github.com/poissonconsulting/rtide/issues

0 errors | 0 warnings | 0 notes

rtimes (0.3.0)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: https://github.com/ropengov/rtimes/issues

0 errors | 0 warnings | 0 notes

rtip (1.0.0)

Maintainer: Angel Berihuete angel.berihuete@uca.es

0 errors | 0 warnings | 0 notes

RtutoR (0.3)

Maintainer: Anup Nair nairanup50695@gmail.com

0 errors | 0 warnings | 0 notes

rvertnet (0.5.0)

Maintainer: Scott Chamberlain myrmecocystus@gmail.com
Bug reports: https://github.com/ropensci/rvertnet/issues

0 errors | 0 warnings | 0 notes

rWBclimate (0.1.3)

Maintainer: Edmund Hart edmund.m.hart@gmail.com
Bug reports: http://github.com/ropensci/rWBclimate/issues

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
check_ISO_code: no visible binding for global variable ‘NoAm_country’
check_ISO_code: no visible binding for global variable ‘SoAm_country’
check_ISO_code: no visible binding for global variable ‘Oceana_country’
check_ISO_code: no visible binding for global variable ‘Africa_country’
check_ISO_code: no visible binding for global variable ‘Asia_country’
check_ISO_code: no visible binding for global variable ‘Eur_country’
climate_map: no visible binding for global variable ‘data’
date_correct: no visible global function definition for ‘tail’
Undefined global functions or variables:
  Africa_country Asia_country Eur_country NoAm_country Oceana_country
  SoAm_country data tail
Consider adding
  importFrom("utils", "data", "tail")
to your NAMESPACE file.

rwirelesscom (1.4.3)

Maintainer: Alberto Gutierrez algutier1@gmail.com

0 errors | 0 warnings | 0 notes

rwty (1.0.1)

Maintainer: Dan Warren dan.l.warren@gmail.com

0 errors | 0 warnings | 0 notes

ryouready (0.4)

Maintainer: Mark Heckmann heckmann.mark@gmail.com

0 errors | 0 warnings | 0 notes

Rz (0.9-1)

Maintainer: Masahiro Hayashi rinm884@gmail.com

0 errors | 1 warning | 2 notes

checking dependencies in R code ... WARNING
'library' or 'require' call to ‘vcd’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  ‘foreign’ ‘ggplot2’ ‘grid’ ‘psych’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: ‘foreign:::adQuote’
  See the note in ?`:::` about the use of this operator.
  Including base/recommended package(s):
  ‘foreign’

checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  summary.CrossTable
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

checking R code for possible problems ... NOTE
calc.hist.breaks: no visible global function definition for
  ‘nclass.Sturges’
calc.hist.breaks: no visible global function definition for ‘nclass.FD’
calc.hist.breaks: no visible global function definition for
  ‘nclass.scott’
check.class: no visible global function definition for ‘as.formula’
gtkColorSelectionForPlotGetColor: no visible global function definition
  for ‘rgb’
gtkColorSelectionWidgetNew: no visible global function definition for
... 9 lines ...
write.spss: no visible global function definition for ‘write.table’
write.stata: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  addmargins as.formula assocstats colors localeToCharset nclass.FD
  nclass.Sturges nclass.scott rgb theme_grey write.table
Consider adding
  importFrom("grDevices", "colors", "nclass.FD", "nclass.Sturges",
             "nclass.scott", "rgb")
  importFrom("stats", "addmargins", "as.formula")
  importFrom("utils", "localeToCharset", "write.table")
to your NAMESPACE file.

sadists (0.2.2)

Maintainer: Steven E. Pav shabbychef@gmail.com
Bug reports: https://github.com/shabbychef/sadists/issues

0 errors | 0 warnings | 0 notes

saeRobust (0.1.0)

Maintainer: Sebastian Warnholz Sebastian.Warnholz@fu-berlin.de
Bug reports: https://github.com/wahani/saeRobust/issues

0 errors | 0 warnings | 0 notes

saeSim (0.8.0)

Maintainer: Sebastian Warnholz Sebastian.Warnholz@fu-berlin.de
Bug reports: https://github.com/wahani/saeSim/issues

0 errors | 0 warnings | 0 notes

SamplerCompare (1.2.7)

Maintainer: Madeleine Thompson madeleineth@gmail.com

0 errors | 0 warnings | 0 notes

sand (1.0.2)

Maintainer: Gabor Csardi csardi.gabor@gmail.com
Bug reports: https://github.com/kolaczyk/sand/issues

0 errors | 0 warnings | 2 notes

checking package dependencies ... NOTE
Packages suggested but not available for checking:
  ‘GO.db’ ‘GOstats’ ‘org.Sc.sgd.db’

checking R code for possible problems ... NOTE
.run_chunk: no visible global function definition for ‘capture.output’
install_sand_packages: no visible global function definition for
  ‘packageDescription’
set_chapter: no visible global function definition for ‘sessionInfo’
Undefined global functions or variables:
  capture.output packageDescription sessionInfo
Consider adding
  importFrom("utils", "capture.output", "packageDescription",
             "sessionInfo")
to your NAMESPACE file.

scanstatistics (0.1.0)

Maintainer: Benjamin Kjellson benjak@math.su.se
Bug reports: https://github.com/BenjaK/scanstatistics/issues

0 errors | 0 warnings | 0 notes

scdhlm (0.3)

Maintainer: James Pustejovsky jepusto@gmail.com
Bug reports: https://github.com/jepusto/scdhlm/issues

0 errors | 0 warnings | 0 notes

SCGLR (2.0.3)

Maintainer: Guillaume Cornu gcornu@cirad.fr

0 errors | 0 warnings | 0 notes

SciencesPo (1.4.1)

Maintainer: Daniel Marcelino dmarcelino@live.com
Bug reports: http://github.com/danielmarcelino/SciencesPo/issues

0 errors | 0 warnings | 0 notes

scmamp (0.2.55)

Maintainer: Borja Calvo borja.calvo@ehu.eus
Bug reports: https://github.com/b0rxa/scmamp/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘graph’ ‘Rgraphviz’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

SDaA (0.1-3)

Maintainer: Tobias Verbeke tobias.verbeke@openanalytics.eu

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
lahiri.design: no visible global function definition for ‘runif’
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.

sdcMicro (4.6.1)

Maintainer: Matthias Templ matthias.templ@gmail.com

0 errors | 0 warnings | 0 notes

SDEFSR (0.7.1.0)

Maintainer: Angel M. Garcia amgv0009@red.ujaen.es

0 errors | 0 warnings | 0 notes

sdmvspecies (0.3.2)

Maintainer: Xiaoquan Kong u1mail2me@gmail.com
Bug reports: https://github.com/howl-anderson/sdmvspecies/issues

0 errors | 0 warnings | 0 notes

season (0.3-5)

Maintainer: Adrian Barnett a.barnett@qut.edu.au

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
aaft: no visible global function definition for ‘rnorm’
aaft: no visible global function definition for ‘runif’
casecross: no visible global function definition for ‘as.formula’
casecross: no visible global function definition for ‘model.frame’
casecross: no visible binding for global variable ‘na.omit’
ciPhase: no visible global function definition for ‘quantile’
cipolygon: no visible global function definition for ‘polygon’
cosinor: no visible global function definition for ‘gaussian’
cosinor: no visible global function definition for ‘as.formula’
... 59 lines ...
  qnorm quantile relevel resid residuals rgamma rnorm rug runif sd text
  time
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "axis", "box", "hist", "lines", "par", "plot",
             "points", "polygon", "rug", "text")
  importFrom("stats", "acf", "as.formula", "cpgram", "fitted",
             "gaussian", "glm", "median", "model.frame", "na.omit",
             "pchisq", "qchisq", "qnorm", "quantile", "relevel", "resid",
             "residuals", "rgamma", "rnorm", "runif", "sd", "time")
to your NAMESPACE file.

SEERaBomb (2016.1)

Maintainer: Tomas Radivoyevitch radivot@ccf.org

1 error | 0 warnings | 0 notes

checking whether package ‘SEERaBomb’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/SEERaBomb.Rcheck/00install.out’ for details.

seewave (2.0.5)

Maintainer: Jerome Sueur sueur@mnhn.fr

1 error | 0 warnings | 0 notes

checking whether package ‘seewave’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/seewave.Rcheck/00install.out’ for details.

selfea (1.0.1)

Maintainer: Lang Ho Lee langholee@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
get_statistics_from_file: no visible global function definition for
  ‘read.csv’
glm_anova: no visible global function definition for ‘aov’
glm_anova: no visible global function definition for ‘glm’
glm_anova: no visible global function definition for ‘gaussian’
glm_anova: no visible global function definition for ‘anova’
glm_anova: no visible global function definition for ‘quasipoisson’
glm_anova: no visible global function definition for ‘sd’
glm_anova: no visible global function definition for ‘p.adjust’
ttest_cohens_d: no visible global function definition for ‘t.test’
ttest_cohens_d: no visible global function definition for ‘sd’
Undefined global functions or variables:
  anova aov gaussian glm p.adjust quasipoisson read.csv sd t.test
Consider adding
  importFrom("stats", "anova", "aov", "gaussian", "glm", "p.adjust",
             "quasipoisson", "sd", "t.test")
  importFrom("utils", "read.csv")
to your NAMESPACE file.

SemiParBIVProbit (3.8)

Maintainer: Giampiero Marra giampiero.marra@ucl.ac.uk

0 errors | 0 warnings | 0 notes

sensiPhy (0.5.0)

Maintainer: Gustavo Paterno paternogbc@gmail.com
Bug reports: https://github.com/paternogbc/sensiPhy/issues

0 errors | 0 warnings | 0 notes

sensitivity (1.12.2)

Maintainer: Bertrand Iooss biooss@yahoo.fr

0 errors | 0 warnings | 0 notes

SensMixed (2.0-10)

Maintainer: Alexandra Kuznetsova alku@dtu.dk

0 errors | 0 warnings | 0 notes

SensusR (2.0.0)

Maintainer: Matthew S. Gerber gerber.matthew@gmail.com

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘SensusR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.LocationDatum
> ### Title: Plot location data.
> ### Aliases: plot.LocationDatum
> 
> ### ** Examples
... 188 lines ...
[1] "57% done merging data for WlanDatum (4 of 7)."
[1] "71% done merging data for WlanDatum (5 of 7)."
[1] "85% done merging data for WlanDatum (6 of 7)."
[1] "100% done merging data for WlanDatum (7 of 7)."
[1] "Creating data frame for WlanDatum."
> plot(data$LocationDatum)
Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=38.0676352725243,-78.9510441850485&zoom=10&size=640x640&scale=2&maptype=terrain&language=en-EN&sensor=false
Information from URL : http://maps.googleapis.com/maps/api/geocode/json?address=38.0676352725243,-78.9510441850485&sensor=false
Error: GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

sentimentr (0.2.3)

Maintainer: Tyler Rinker tyler.rinker@gmail.com

0 errors | 0 warnings | 0 notes

SeqFeatR (0.2.4)

Maintainer: Bettina Budeus bettina.budeus@stud.uni-due.de

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘qvalue’ ‘widgetTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

sgd (1.1)

Maintainer: Dustin Tran dustin@cs.columbia.edu
Bug reports: https://github.com/airoldilab/sgd/issues

0 errors | 0 warnings | 0 notes

sglr (0.7)

Maintainer: Balasubramanian Narasimhan naras@stat.stanford.edu

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking R code for possible problems ... NOTE
.computePStar: no visible global function definition for ‘uniroot’
plotBoundary: no visible global function definition for
  ‘scale_y_continuous’
Undefined global functions or variables:
  scale_y_continuous uniroot
Consider adding
  importFrom("stats", "uniroot")
to your NAMESPACE file.

shazam (0.1.4)

Maintainer: Jason Vander Heiden jason.vanderheiden@yale.edu
Bug reports: https://bitbucket.org/kleinstein/shazam/issues

0 errors | 0 warnings | 0 notes

SHELF (1.2.1)

Maintainer: Jeremy Oakley j.oakley@sheffield.ac.uk
Bug reports: https://github.com/OakleyJ/SHELF/issues

0 errors | 0 warnings | 0 notes

shiny (0.14.2)

Maintainer: Winston Chang winston@rstudio.com
Bug reports: https://github.com/rstudio/shiny/issues

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  7.2Mb
  sub-directories of 1Mb or more:
    www   6.1Mb

ShinyItemAnalysis (0.2.0)

Maintainer: Patricia Martinkova martinkova@cs.cas.cz

0 errors | 0 warnings | 0 notes

shinystan (2.2.1)

Maintainer: Jonah Gabry jsg2201@columbia.edu
Bug reports: https://github.com/stan-dev/shinystan/issues/

0 errors | 0 warnings | 0 notes

sidier (3.0.1)

Maintainer: A.J. Muñoz-Pajares ajesusmp@ugr.es

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
BARRIEL: no visible global function definition for ‘write.table’
FIFTH: no visible global function definition for ‘write.table’
FindHaplo: no visible global function definition for ‘write.table’
HapPerPop: no visible global function definition for ‘read.table’
HapPerPop: no visible global function definition for ‘write.table’
MCIC: no visible global function definition for ‘write.table’
NINA.thr: no visible global function definition for ‘pdf’
NINA.thr: no visible global function definition for ‘dev.off’
NINA.thr: no visible global function definition for ‘write.table’
... 48 lines ...
zero.thr: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
  as.dist colors dev.new dev.off layout lines mtext par pdf pie plot
  png points read.table segments text write.table
Consider adding
  importFrom("grDevices", "colors", "dev.new", "dev.off", "pdf", "png")
  importFrom("graphics", "layout", "lines", "mtext", "par", "pie",
             "plot", "points", "segments", "text")
  importFrom("stats", "as.dist")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.

sigmoid (0.2.0)

Maintainer: Bastiaan Quast bquast@gmail.com

0 errors | 0 warnings | 0 notes

Sim.DiffProc (3.4)

Maintainer: Arsalane Chouaib Guidoum acguidoum@usthb.dz

0 errors | 0 warnings | 1 note

checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘Ecdat’, ‘PSM’, ‘fptdApprox’, ‘yuima’

simcausal (0.5.1)

Maintainer: Oleg Sofrygin oleg.sofrygin@gmail.com
Bug reports: https://github.com/osofr/simcausal/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
node W1, order:1
node W2, order:2
node W3, order:3
...automatically assigning order attribute to some nodes...
node W1, order:1
node W2, order:2
...automatically assigning order attribute to some nodes...
... 8 lines ...
Attaching package: 'ggplot2'

The following object is masked _by_ '.GlobalEnv':

    %+%

Loading required package: lattice
Quitting from lines 2415-2446 (simcausal_vignette.Rnw) 
Error: processing vignette 'simcausal_vignette.Rnw' failed with diagnostics:
package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
Execution halted

SimDesign (1.4)

Maintainer: Phil Chalmers rphilip.chalmers@gmail.com

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘doMPI’

simmer (3.5.0)

Maintainer: Iñaki Ucar i.ucar86@gmail.com
Bug reports: https://github.com/r-simmer/simmer/issues

0 errors | 1 warning | 0 notes

checking compiled code ... WARNING
File ‘simmer/libs/simmer.so’:
  Found ‘_abort’, possibly from ‘abort’ (C)
    Objects: ‘process.o’, ‘resource.o’, ‘simmer_rcpp.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

simmr (0.3)

Maintainer: Andrew Parnell andrew.parnell@ucd.ie

1 error | 0 warnings | 0 notes

checking whether package ‘simmr’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/simmr.Rcheck/00install.out’ for details.

simPH (1.3.9)

Maintainer: Christopher Gandrud christopher.gandrud@gmail.com
Bug reports: https://github.com/christophergandrud/simPH/issues

0 errors | 0 warnings | 0 notes

simstudy (0.1.1)

Maintainer: Keith Goldfeld Keith.Goldfeld@nyumc.org

0 errors | 0 warnings | 0 notes

simTool (1.0.3)

Maintainer: Marsel Scheer scheer@freescience.de

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.

checking R code for possible problems ... NOTE
evalGrids: no visible global function definition for ‘sessionInfo’
meanAndNormCI: no visible global function definition for ‘sd’
Undefined global functions or variables:
  sd sessionInfo
Consider adding
  importFrom("stats", "sd")
  importFrom("utils", "sessionInfo")
to your NAMESPACE file.

simulator (0.2.0)

Maintainer: Jacob Bien jbien@cornell.edu
Bug reports: http://github.com/jacobbien/simulator/issues

0 errors | 0 warnings | 0 notes

sitmo (1.0.0)

Maintainer: James Balamuta balamut2@illinois.edu
Bug reports: https://github.com/coatless/sitmo/issues

0 errors | 0 warnings | 0 notes

SixSigma (0.9-3)

Maintainer: Emilio L. Cano emilio.lopez@urjc.es

0 errors | 0 warnings | 0 notes

sjPlot (2.1.1)

Maintainer: Daniel Lüdecke d.luedecke@uke.de
Bug reports: https://github.com/sjPlot/devel/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘sjPlot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sjp.scatter
> ### Title: Plot (grouped) scatter plots
> ### Aliases: sjp.scatter
> 
> ### ** Examples
... 37 lines ...
> sjp.scatter(efc$c160age, efc$e17age, efc$e42dep, title = "", 
+             axis.titles = c("", ""))
> 
> # plot text labels
> pl <- c(1:10)
> for (i in 1:10) 
+   pl[i] <- paste(sample(c(0:9, letters, LETTERS), 8, replace = TRUE), collapse = "")
> sjp.scatter(runif(10), runif(10), dot.labels = pl)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

sjstats (0.6.0)

Maintainer: Daniel Lüdecke d.luedecke@uke.de
Bug reports: https://github.com/sjPlot/sjstats/issues

0 errors | 0 warnings | 0 notes

slackr (1.4.2)

Maintainer: Bob Rudis bob@rudis.net
Bug reports: https://github.com/hrbrmstr/slackr/issues

0 errors | 0 warnings | 0 notes

slim (0.1.0)

Maintainer: Daniel Farewell farewelld@cf.ac.uk

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 182-190 (slim.Rmd) 
Error: processing vignette 'slim.Rmd' failed with diagnostics:
there is no package called 'jmcm'
Execution halted


checking package dependencies ... NOTE
Packages suggested but not available for checking: ‘jmcm’ ‘gee’

SmarterPoland (1.7)

Maintainer: Przemyslaw Biecek przemyslaw.biecek@gmail.com

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    data   8.1Mb

SMFI5 (1.0)

Maintainer: Bruno Remillard bruno.remillard@hec.ca

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  ‘ggplot2’ ‘reshape’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘corpcor’ ‘ggplot2’ ‘reshape’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
LogLikCIR: no visible global function definition for ‘head’
LogLikCIR: no visible global function definition for ‘dchisq’
LogLikFeller: no visible global function definition for ‘head’
LogLikFeller: no visible global function definition for ‘dchisq’
LogLikOU: no visible global function definition for ‘head’
LogLikVasicek: no visible global function definition for ‘head’
bond.cir: no visible global function definition for ‘melt’
bond.cir: no visible global function definition for ‘ggplot’
bond.cir: no visible global function definition for ‘aes’
... 59 lines ...
sim.vasicek: no visible global function definition for ‘geom_line’
sim.vasicek: no visible global function definition for ‘ggtitle’
Undefined global functions or variables:
  acf aes cor cov dchisq geom_line ggplot ggtitle head melt optim plot
  pseudoinverse qnorm rchisq rnorm rpois sd title
Consider adding
  importFrom("graphics", "plot", "title")
  importFrom("stats", "acf", "cor", "cov", "dchisq", "optim", "qnorm",
             "rchisq", "rnorm", "rpois", "sd")
  importFrom("utils", "head")
to your NAMESPACE file.

smoof (1.4)

Maintainer: Jakob Bossek j.bossek@gmail.com
Bug reports: https://github.com/jakobbossek/smoof/issues

0 errors | 0 warnings | 0 notes

snht (1.0.4)

Maintainer: Josh Browning rockclimber112358@gmail.com

0 errors | 0 warnings | 0 notes

snpEnrichment (1.7.0)

Maintainer: Mickael Canouil mickael.canouil@cnrs.fr
Bug reports: https://github.com/mcanouil/snpEnrichment/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘snpStats’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

soc.ca (0.7.3)

Maintainer: Anton Grau Larsen agl.dbp@cbs.dk

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘soc.ca-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add.to.label
> ### Title: Add values to label
> ### Aliases: add.to.label
> 
> ### ** Examples
... 75 lines ...
[10] "Film:\n Comedy"        "Film:\n CostumeDrama"  "Film:\n Documentary"  
[13] "Film:\n Horror"        "Film:\n Musical"       "Film:\n Romance"      
[16] "Film:\n SciFi"         "Art:\n Impressionism"  "Art:\n Landscape"     
[19] "Art:\n ModernArt"      "Art:\n PerformanceArt" "Art:\n Portrait"      
[22] "Art:\n RenaissanceArt" "Art:\n StillLife"      "Eat:\n Fish&Chips"    
[25] "Eat:\n FrenchRest"     "Eat:\n IndianRest"     "Eat:\n ItalianRest"   
[28] "Eat:\n Pub"            "Eat:\n SteakHouse"    
> map.ctr(result.label)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

Sofi (0.16.4.8)

Maintainer: Jose D. Loera jose.loera@inegi.org.mx
Bug reports: https://github.com/loerasg/Sofi/issues

0 errors | 0 warnings | 0 notes

solarius (0.3.0.2)

Maintainer: Andrey Ziyatdinov andrey.ziyatdinov@upc.edu

0 errors | 0 warnings | 0 notes

sorvi (0.7.26)

Maintainer: Leo Lahti louhos@googlegroups.com
Bug reports: https://github.com/ropengov/sorvi/issues

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
convert_municipality_names: no visible global function definition for
  ‘read.csv’
regression_plot: no visible binding for global variable ‘loess’
regression_plot: no visible global function definition for
  ‘colorRampPalette’
regression_plot: no visible global function definition for
  ‘loess.control’
regression_plot: no visible global function definition for ‘predict’
regression_plot : <anonymous>: no visible global function definition
  for ‘quantile’
regression_plot : <anonymous>: no visible global function definition
  for ‘pnorm’
regression_plot: no visible global function definition for
  ‘flush.console’
regression_plot: no visible global function definition for ‘density’
Undefined global functions or variables:
  colorRampPalette density flush.console loess loess.control pnorm
  predict quantile read.csv
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("stats", "density", "loess", "loess.control", "pnorm",
             "predict", "quantile")
  importFrom("utils", "flush.console", "read.csv")
to your NAMESPACE file.

sotkanet (0.9.21)

Maintainer: Leo Lahti louhos@googlegroups.com
Bug reports: https://github.com/ropengov/sotkanet/issues

0 errors | 0 warnings | 0 notes

sourceR (0.2.0)

Maintainer: Poppy Miller p.miller@lancaster.ac.uk

0 errors | 0 warnings | 0 notes

SpaDES (1.3.1)

Maintainer: Alex M Chubaty alexander.chubaty@canada.ca
Bug reports: https://github.com/PredictiveEcology/SpaDES/issues

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘fastshp’

sparkTable (1.2.0)

Maintainer: Alexander Kowarik alexander.kowarik@statistik.gv.at
Bug reports: https://github.com/alexkowa/sparkTable/issues

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘sparkTable-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot-methods
> ### Title: Plot objects of class 'sparkline', 'sparkbar', 'sparkhist' or
> ###   'sparkbox'
> ### Aliases: plot plot-methods plot,sparkbar-method plot,sparkbox-method
> ###   plot,sparkline-method plot,sparkhist-method
> 
> ### ** Examples
> 
>   data(pop)
>   x <- pop[pop[,2]=="Insgesamt",3]
>   a <- newSparkLine(values=x, pointWidth=8)
>   plot(a)
Error in theme(legend.position = "none", line = element_blank(), text = element_blank(),  : 
  formal argument "axis.ticks" matched by multiple actual arguments
Calls: plot -> plot -> theme
Execution halted

checking R code for possible problems ... NOTE
plot,sparkbar: possible error in theme(legend.position = "none", line =
  element_blank(), text = element_blank(), title = element_blank(),
  axis.line = element_blank(), axis.ticks = element_blank(),
  legend.background = element_rect(fill = "white", colour = NA),
  plot.background = element_blank(), strip.background =
  element_rect(fill = "white", colour = "white"), panel.margin =
  unit(0, "null"), plot.margin = rep(unit(0, "null"), 4), panel.grid =
  element_blank(), axis.ticks = element_blank(), axis.ticks.length =
  unit(0, "null"), axis.text.x = element_blank(), : formal argument
... 33 lines ...
  axis.line = element_blank(), axis.ticks = element_blank(),
  legend.background = element_rect(fill = "white", colour = NA),
  plot.background = element_blank(), strip.background =
  element_rect(fill = "white", colour = "white"), panel.margin =
  unit(0, "null"), plot.margin = rep(unit(0, "null"), 4), panel.grid =
  element_blank(), axis.ticks = element_blank(), axis.ticks.length =
  unit(0, "null"), axis.text.x = element_blank(), : formal argument
  "axis.ticks" matched by multiple actual arguments
plot,sparkline: possible error in axis.text.y = element_blank(),
  panel.background = element_rect(fill = allColors(x)[4])): formal
  argument "axis.ticks" matched by multiple actual arguments

sparsediscrim (0.2.3)

Maintainer: John A. Ramey johnramey@gmail.com

0 errors | 0 warnings | 0 notes

SparseFactorAnalysis (1.0)

Maintainer: Marc Ratkovic ratkovic@princeton.edu

0 errors | 0 warnings | 0 notes

sparsereg (1.2)

Maintainer: Marc Ratkovic ratkovic@princeton.edu

0 errors | 0 warnings | 0 notes

sparsevar (0.0.9)

Maintainer: Simone Vazzoler svazzole@gmail.com
Bug reports: http://github.com/svazzole/sparsevar

0 errors | 0 warnings | 0 notes

spatialClust (1.1.1)

Maintainer: Imam Habib Pamungkas imamhabibpamungkas@gmail.com

0 errors | 0 warnings | 0 notes

spbabel (0.4.5)

Maintainer: Michael D. Sumner mdsumner@gmail.com
Bug reports: https://github.com/mdsumner/spbabel/issues

0 errors | 0 warnings | 0 notes

spcosa (0.3-6)

Maintainer: Dennis Walvoort dennis.Walvoort@wur.nl

1 error | 0 warnings | 0 notes

checking whether package ‘spcosa’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/spcosa.Rcheck/00install.out’ for details.

specmine (1.0)

Maintainer: Christopher Costa chrisbcl@hotmail.com

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘xcms’ ‘MAIT’ ‘genefilter’ ‘impute’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

spef (1.0-1)

Maintainer: Sy Han (Steven) Chiou schiou@hsph.harvard.edu

0 errors | 0 warnings | 0 notes

spikeSlabGAM (1.1-11)

Maintainer: Fabian Scheipl fabian.scheipl@stat.uni-muenchen.de

0 errors | 0 warnings | 0 notes

SPOT (1.1.0)

Maintainer: Martin Zaefferer martin.zaefferer@gmx.de

0 errors | 0 warnings | 0 notes

sprm (1.2.2)

Maintainer: Irene Hoffmann irene.hoffmann@tuwien.ac.at

0 errors | 0 warnings | 0 notes

squid (0.1.1)

Maintainer: Hassen Allegue hassen.allegue@gmail.com
Bug reports: https://github.com/hallegue/squid/issues

0 errors | 0 warnings | 0 notes

srvyr (0.2.0)

Maintainer: Greg Freedman Ellis greg.freedman@gmail.com
Bug reports: https://github.com/gergness/srvyr/issues

0 errors | 0 warnings | 0 notes

ss3sim (0.9.2)

Maintainer: Sean Anderson sean@seananderson.ca

0 errors | 0 warnings | 0 notes

starma (1.3)

Maintainer: Felix Cheysson felix@cheysson.fr

0 errors | 0 warnings | 0 notes

starmie (0.1.2)

Maintainer: Stuart Lee lee.s@wehi.edu.au
Bug reports: https://github.com/sa-lee/starmie/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘iterpc’ ‘label.switching’ ‘MCL’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

statar (0.6.2)

Maintainer: Matthieu Gomez mattg@princeton.edu
Bug reports: https://github.com/matthieugomez/statar/issues

0 errors | 0 warnings | 0 notes

statcheck (1.2.2)

Maintainer: Michele B. Nuijten m.b.nuijten@uvt.nl

0 errors | 0 warnings | 0 notes

statebins (1.2.2)

Maintainer: Bob Rudis bob@rudis.net
Bug reports: https://github.com/hrbrmstr/statebins/issues

0 errors | 0 warnings | 0 notes

StatRank (0.0.6)

Maintainer: Hossein Azari Soufiani azari.hossein@gmail.com

0 errors | 0 warnings | 0 notes

strataG (1.0.5)

Maintainer: Eric Archer eric.archer@noaa.gov
Bug reports: https://github.com/EricArcher/strataG/issues

0 errors | 0 warnings | 0 notes

StroupGLMM (0.1.0)

Maintainer: Muhammad Yaseen myaseen208@gmail.com

1 error | 0 warnings | 0 notes

checking whether package ‘StroupGLMM’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/StroupGLMM.Rcheck/00install.out’ for details.

structSSI (1.1.1)

Maintainer: Kris Sankaran kriss1@stanford.edu

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘multtest’

Package suggested but not available for checking: ‘phyloseq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

strvalidator (1.8.0)

Maintainer: Oskar Hansson oskar.hansson@fhi.no
Bug reports: https://github.com/OskarHansson/strvalidator/issues

1 error | 0 warnings | 0 notes

checking whether package ‘strvalidator’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/strvalidator.Rcheck/00install.out’ for details.

subspaceMOA (0.5.1)

Maintainer: Marwan Hassani rsubspace@cs.rwth-aachen.de

1 error | 0 warnings | 0 notes

checking whether package ‘subspaceMOA’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/subspaceMOA.Rcheck/00install.out’ for details.

SuperLearner (2.0-19)

Maintainer: Eric Polley polley.eric@mayo.edu

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Packages suggested but not available for checking: ‘genefilter’ ‘sva’

surveillance (1.12.1)

Maintainer: Sebastian Meyer Sebastian.Meyer@ifspm.uzh.ch
Bug reports: https://r-forge.r-project.org/tracker/?group_id=45

0 errors | 1 warning | 2 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
... 8 lines ...
Loading required package: parallel
 **********   GAMLSS Version 5.0-0  ********** 
For more on GAMLSS look at http://www.gamlss.org/
Type gamlssNews() to see new features/changes/bug fixes.


Error: processing vignette 'monitoringCounts.Rnw' failed with diagnostics:
 chunk 17 (label = fPlot1) 
Error in theme(axis.line = element_blank(), panel.grid.major = element_blank(),  : 
  formal argument "axis.line" matched by multiple actual arguments
Execution halted

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘INLA’

checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc   2.2Mb

survminer (0.2.2)

Maintainer: Alboukadel Kassambara alboukadel.kassambara@gmail.com
Bug reports: https://github.com/kassambara/survminer/issues

1 error | 2 warnings | 1 note

checking examples ... ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ggsurvplot
> ### Title: Drawing Survival Curves Using ggplot2
> ### Aliases: ggsurvplot print.ggsurvplot
> 
> ### ** Examples
... 51 lines ...
> 
> # Use brewer color palette "Dark2"
> # Add risk table
> ggsurvplot(fit, linetype = "strata",
+           conf.int = TRUE, pval = TRUE,
+           palette = "Dark2", risk.table = TRUE)
Warning in is.na(x) :
  is.na() applied to non-(list or vector) of type 'NULL'
Error in -x : invalid argument to unary operator
Calls: ggsurvplot ... summary.survfit -> findrow -> find2 -> findInterval
Execution halted

checking Rd cross-references ... WARNING
Missing link or links in documentation object 'ggcoxdiagnostics.Rd':
  ‘ggtheme’

Missing link or links in documentation object 'ggcoxfunctional.Rd':
  ‘ggtheme’

Missing link or links in documentation object 'ggcoxzph.Rd':
  ‘ggtheme’

Missing link or links in documentation object 'ggsurvplot.Rd':
  ‘ggtheme’

See section 'Cross-references' in the 'Writing R Extensions' manual.


checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: ggplot2
Quitting from lines 55-64 (Informative_Survival_Plots.Rmd) 
Error: processing vignette 'Informative_Survival_Plots.Rmd' failed with diagnostics:
there is no package called 'RTCGA.clinical'
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘RTCGA.clinical’

survMisc (0.5.3)

Maintainer: Chris Dardis christopherdardis@gmail.com
Bug reports: https://github.com/dardisco/survMisc/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘survMisc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: autoplotTableAndPlot
> ### Title: Arrange a survival plot with corresponding table and legend.
> ### Aliases: autoplot.tableAndPlot autoplotTableAndPlot
> ### Keywords: graphics
> 
> ### ** Examples
> 
> data("kidney", package="KMsurv")
> autoplot(survfit(Surv(time, delta) ~ type, data=kidney), type="fill")
Warning: Ignoring unknown aesthetics: x, y
Warning: Ignoring unknown aesthetics: x, y
Error in if (is.nan(times1[1])) times1 <- times : 
  argument is of length zero
Calls: autoplot -> autoplot.survfit
Execution halted

SurvRank (0.1)

Maintainer: Michael Laimighofer michael.laimighofer@helmholtz-muenchen.de

0 errors | 0 warnings | 0 notes

sValues (0.1.4)

Maintainer: Carlos Cinelli carloscinelli@hotmail.com
Bug reports: https://github.com/carloscinelli/sValues

0 errors | 0 warnings | 0 notes

svdvis (0.1)

Maintainer: Neo Christopher Chung nchchung@gmail.com

0 errors | 0 warnings | 0 notes

swfscMisc (1.2)

Maintainer: Eric Archer eric.archer@noaa.gov
Bug reports: https://github.com/EricArcher/swfscMisc/issues

0 errors | 0 warnings | 0 notes

SWMPr (2.1.7)

Maintainer: Marcus W. Beck mbafs2012@gmail.com
Bug reports: https://github.com/fawda123/SWMPr/issues

0 errors | 0 warnings | 0 notes

synthpop (1.3-0)

Maintainer: Beata Nowok beata.nowok@gmail.com

0 errors | 0 warnings | 0 notes

tableone (0.7.3)

Maintainer: Kazuki Yoshida kazukiyoshida@mail.harvard.edu

0 errors | 0 warnings | 0 notes

tabplot (1.3)

Maintainer: Martijn Tennekes mtennekes@gmail.com

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘tabplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tableplot
> ### Title: Create a tableplot
> ### Aliases: tableplot
> ### Keywords: visualization
> 
... 41 lines ...
  font width unknown for character 0x9
> 
> # create a tableplot cut category, and fix scale limits of carat, table, and price
> tabs <- tableplot(p, subset=cut,
+ 	limitsX=list(carat=c(0,4), table=c(55, 65), price=c(0, 20000)), plot=FALSE)
Error in if (dfile == getOption("fftempdir")) finalizer <- "delete" else finalizer <- "close" : 
  argument is of length zero
Calls: tableplot ... clone.ffdf -> lapply -> FUN -> clone.ff -> assign -> ff
Error in setwd(cwd) : character argument expected
Calls: tableplot ... clone.ffdf -> lapply -> FUN -> clone.ff -> assign -> ff -> setwd
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 27-39 (tabplot-timings.Rmd) 
Error: processing vignette 'tabplot-timings.Rmd' failed with diagnostics:
(list) object cannot be coerced to type 'double'
Execution halted

tadaatoolbox (0.10.0)

Maintainer: Lukas Burk lukas@quantenbrot.de
Bug reports: https://github.com/tadaadata/tadaatoolbox/issues

0 errors | 0 warnings | 0 notes

taRifx (1.0.6)

Maintainer: Ari B. Friedman abfriedman@gmail.com

0 errors | 0 warnings | 4 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.

checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘gdata’ ‘ggplot2’ ‘grid’ ‘lattice’ ‘xtable’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  as.matrix.by stack.list
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

checking R code for possible problems ... NOTE
as.data.frame.by: no visible global function definition for ‘na.omit’
autoplot.microbenchmark : uq: no visible global function definition for
  ‘quantile’
autoplot.microbenchmark : lq: no visible global function definition for
  ‘quantile’
autoplot.microbenchmark: no visible global function definition for
  ‘ggplot’
autoplot.microbenchmark: no visible global function definition for
  ‘aes’
... 90 lines ...
  grid.points grid.polyline grid.rect grid.segments grid.text
  interleave label<- latticeParseFormula median na.omit opts
  panel.densityplot panel.lines panel.xyplot par pf plot.new
  popViewport pushViewport quantile sd seekViewport stat_summary terms
  text theme_text time unit upViewport viewport write.csv xtable
Consider adding
  importFrom("graphics", "barplot", "par", "plot.new", "text")
  importFrom("stats", "ecdf", "median", "na.omit", "pf", "quantile",
             "sd", "terms", "time")
  importFrom("utils", "write.csv")
to your NAMESPACE file.

TcGSA (0.10.1)

Maintainer: Boris P. Hejblum bhejblum@hsph.harvard.edu
Bug reports: https://github.com/borishejblum/TcGSA/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘multtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

tcgsaseq (1.0.1)

Maintainer: Boris P. Hejblum bhejblum@hsph.harvard.edu
Bug reports: https://github.com/denisagniel/tcgsaseq/issues

1 error | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘tcgsaseq-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: voom_weights
> ### Title: Precision weights accounting for heteroscedasticity in RNA-seq
> ###   count data
> ### Aliases: voom_weights
> 
... 7 lines ...
> n <- 12
> p <- 2
> y <- t(sapply(1:G, FUN=function(x){rnbinom(n=n, size=0.07, mu=200)}))
> 
> x <- sapply(1:p, FUN=function(x){rnorm(n=n, mean=n, sd=1)})
> 
> my_w <-  voom_weights(y, x, doPlot=TRUE)
> w_voom <- limma::voom(counts=y, design=x, plot=TRUE) #slightly faster than us. Same results
Error in loadNamespace(name) : there is no package called ‘limma’
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘limma’

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘limma’

tcR (2.2.1.11)

Maintainer: Vadim Nazarov vdm.nazarov@gmail.com
Bug reports: https://github.com/imminfo/tcr/issues

0 errors | 0 warnings | 1 note

checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   1.2Mb
    doc    3.9Mb

tdr (0.11)

Maintainer: Oscar Perpinan Lamigueiro oscar.perpinan@gmail.com
Bug reports: https://github.com/oscarperpinan/tdr/issues

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
makeCircles: no visible global function definition for ‘quantile’
targetDiagram: no visible global function definition for ‘as.formula’
targetDiagram: no visible global function definition for ‘modifyList’
targetDiagram: no visible global function definition for ‘extendrange’
tdStats : sdo: no visible global function definition for ‘sd’
tdStats : sdm: no visible global function definition for ‘sd’
tdStats : r2: no visible global function definition for ‘cor’
Undefined global functions or variables:
  as.formula cor extendrange modifyList quantile sd
Consider adding
  importFrom("grDevices", "extendrange")
  importFrom("stats", "as.formula", "cor", "quantile", "sd")
  importFrom("utils", "modifyList")
to your NAMESPACE file.

TELP (1.0)

Maintainer: Gabriel Henrique Oliveira Assuncao gabrielhenryoliver@hotmail.com

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘TELP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: telp
> ### Title: The Base Function of This Package The Free Evocation of Words
> ###   Technique
> ### Aliases: telp
> ### Keywords: function
> 
> ### ** Examples
> 
> telp()
Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") : 
  [tcl] invalid command name "toplevel".
Calls: telp ... tktoplevel -> tkwidget -> tcl -> .Tcl.objv -> structure
Execution halted

texmexseq (0.3)

Maintainer: Scott Olesen swo@mit.edu

0 errors | 0 warnings | 0 notes

Thermimage (2.2.3)

Maintainer: Glenn J. Tattersall gtatters@brocku.ca
Bug reports: http://github.com/gtatters/Thermimage/issues

0 errors | 0 warnings | 0 notes

thief (0.2)

Maintainer: Rob Hyndman Rob.Hyndman@monash.edu
Bug reports: https://github.com/robjhyndman/thief/issues

0 errors | 0 warnings | 0 notes

tidyjson (0.2.1)

Maintainer: Jeremy Stanley jeremy.stanley@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
read_json: no visible global function definition for ‘tail’
Undefined global functions or variables:
  tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.

tidytext (0.1.2)

Maintainer: Julia Silge julia.silge@gmail.com
Bug reports: http://github.com/juliasilge/tidytext/issues

0 errors | 0 warnings | 0 notes

tidyverse (1.0.0)

Maintainer: Hadley Wickham hadley@rstudio.com
Bug reports: https://github.com/hadley/tidyverse/issues

0 errors | 0 warnings | 0 notes

tigerstats (0.2.7)

Maintainer: Homer White hwhite0@georgetowncollege.edu

0 errors | 0 warnings | 0 notes

tigger (0.2.8)

Maintainer: Daniel Gadala-Maria daniel.gadala-maria@yale.edu
Bug reports: https://bitbucket.org/kleinstein/tigger/issues

0 errors | 0 warnings | 0 notes

tigris (0.3.3)

Maintainer: Kyle Walker kyle.walker@tcu.edu

0 errors | 0 warnings | 0 notes

tikzDevice (0.10-1)

Maintainer: Kirill Müller krlmlr+r@mailbox.org
Bug reports: https://github.com/yihui/tikzDevice/issues

0 errors | 0 warnings | 0 notes

timeit (0.2.1)

Maintainer: Kevin Ushey kevinushey@gmail.com

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
'library' or 'require' call to ‘ggplot2’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘microbenchmark’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
determine_replications: no visible global function definition for
  ‘microbenchmark’
do_timeit: no visible global function definition for ‘Rprof’
do_timeit: no visible global function definition for ‘summaryRprof’
mean.timeit: no visible global function definition for ‘aggregate’
plot.timeit: no visible global function definition for ‘ggplot’
plot.timeit: no visible global function definition for ‘aes’
plot.timeit: no visible global function definition for ‘geom_boxplot’
plot.timeit: no visible global function definition for ‘geom_point’
plot.timeit: no visible global function definition for ‘xlab’
plot.timeit: no visible global function definition for ‘ylab’
plot.timeit: no visible global function definition for ‘ggtitle’
plot.timeit: no visible global function definition for ‘coord_flip’
timeit: no visible binding for global variable ‘median’
Undefined global functions or variables:
  Rprof aes aggregate coord_flip geom_boxplot geom_point ggplot ggtitle
  median microbenchmark summaryRprof xlab ylab
Consider adding
  importFrom("stats", "aggregate", "median")
  importFrom("utils", "Rprof", "summaryRprof")
to your NAMESPACE file.

timeline (0.9)

Maintainer: Jason Bryer jason@bryer.org
Bug reports: https://github.com/jbryer/timeline/issues

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
'library' or 'require' call to ‘shiny’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
timeline: no visible global function definition for ‘ggplot’
timeline: no visible global function definition for ‘geom_segment’
timeline: no visible global function definition for ‘aes_string’
timeline: no visible global function definition for ‘geom_rect’
timeline: no visible global function definition for ‘geom_text’
timeline: no visible global function definition for ‘theme’
timeline: no visible global function definition for ‘element_blank’
timeline: no visible global function definition for ‘xlab’
timeline: no visible global function definition for ‘ylab’
timeline: no visible global function definition for ‘xlim’
timeline: no visible global function definition for
  ‘scale_y_continuous’
timeline: no visible global function definition for ‘geom_point’
timeline: no visible global function definition for ‘scale_color_grey’
timeline: no visible global function definition for ‘geom_hline’
Undefined global functions or variables:
  aes_string element_blank geom_hline geom_point geom_rect geom_segment
  geom_text ggplot scale_color_grey scale_y_continuous theme xlab xlim
  ylab

timelineS (0.1.1)

Maintainer: Dahee Lee dhlee99@gmail.com
Bug reports: https://github.com/daheelee/timelineS/issues

0 errors | 0 warnings | 0 notes

TimeProjection (0.2.0)

Maintainer: Jeffrey Wong jeff.ct.wong@gmail.com

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘ggplot2’ ‘plyr’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  ‘Matrix’ ‘lubridate’ ‘timeDate’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
is.Bizday: no visible global function definition for ‘isWeekday’
plotCalendarHeatmap: no visible global function definition for ‘ddply’
plotCalendarHeatmap: no visible global function definition for ‘.’
plotCalendarHeatmap: no visible binding for global variable ‘year’
plotCalendarHeatmap: no visible binding for global variable ‘month’
plotCalendarHeatmap: no visible binding for global variable ‘week’
plotCalendarHeatmap: no visible global function definition for ‘ggplot’
plotCalendarHeatmap: no visible global function definition for ‘aes’
plotCalendarHeatmap: no visible binding for global variable ‘monthweek’
plotCalendarHeatmap: no visible binding for global variable ‘weekday’
plotCalendarHeatmap: no visible global function definition for
  ‘geom_tile’
plotCalendarHeatmap: no visible global function definition for
  ‘facet_grid’
plotCalendarHeatmap: no visible global function definition for
  ‘scale_fill_gradientn’
projectDate: no visible global function definition for ‘holidayNYSE’
projectDate: no visible global function definition for
  ‘sparse.model.matrix’
Undefined global functions or variables:
  . aes ddply facet_grid geom_tile ggplot holidayNYSE isWeekday month
  monthweek scale_fill_gradientn sparse.model.matrix week weekday year

TippingPoint (1.1.0)

Maintainer: Xikun Han hanxikun2014@163.com

0 errors | 0 warnings | 0 notes

tmap (1.6-1)

Maintainer: Martijn Tennekes mtennekes@gmail.com
Bug reports: https://github.com/mtennekes/tmap/issues

0 errors | 0 warnings | 0 notes

Tmisc (0.1.10)

Maintainer: Stephen Turner vustephen@gmail.com

0 errors | 0 warnings | 0 notes

toaster (0.5.4)

Maintainer: Gregory Kanevsky gregory.kanevsky@teradata.com
Bug reports: https://github.com/teradata-aster-field/toaster/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘RODBC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

tourr (0.5.4)

Maintainer: Hadley Wickham h.wickham@gmail.com
Bug reports: https://github.com/ggobi/tourr/

0 errors | 0 warnings | 2 notes

checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘TeachingDemos’ ‘ash’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.

checking R code for possible problems ... NOTE
animate: no visible global function definition for ‘dev.hold’
animate: no visible global function definition for ‘dev.flush’
animate : <anonymous>: no visible global function definition for
  ‘dev.flush’
animate_stereo: no visible global function definition for ‘rgb’
bases_little: no visible global function definition for ‘combn’
basis_random: no visible global function definition for ‘rnorm’
blank_plot: no visible global function definition for ‘par’
blank_plot: no visible global function definition for ‘plot’
... 88 lines ...
  stars step str text
Consider adding
  importFrom("grDevices", "dev.cur", "dev.flush", "dev.hold", "dev.off",
             "hcl", "rgb")
  importFrom("graphics", "abline", "axis", "box", "hist", "image",
             "lines", "pairs", "par", "plot", "points", "polygon",
             "rect", "segments", "stars", "text")
  importFrom("stats", "aov", "as.dist", "density", "manova", "optimize",
             "prcomp", "predict", "rnorm", "runif", "step")
  importFrom("utils", "capture.output", "combn", "data", "str")
to your NAMESPACE file.

tourrGui (0.4)

Maintainer: Dianne Cook dicook@iastate.edu

0 errors | 0 warnings | 4 notes

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘rggobi’

checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
  MIT

checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  ‘Cairo’ ‘RGtk2’ ‘colorspace’ ‘gWidgets’ ‘tourr’
  Please remove these calls from your code.
'library' or 'require' calls in package code:
  ‘TeachingDemos’ ‘ash’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  ‘Cairo’ ‘RGtk2’ ‘colorspace’ ‘gWidgets’ ‘tourr’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
.create_1d_tour: no visible global function definition for ‘gmessage’
.create_1d_tour: no visible global function definition for
  ‘display_dist’
.create_1d_tour: no visible global function definition for ‘grand_tour’
.create_1d_tour: no visible global function definition for
  ‘little_tour’
.create_1d_tour: no visible global function definition for
  ‘guided_tour’
.create_1d_tour: no visible binding for global variable ‘holes’
... 703 lines ...
  display_scatmat display_stars display_stereo display_xy dispose
  find_platform flea gIdleAdd gbutton gcheckbox gcheckboxgroup
  gdroplist ggroup glayout gmessage gnotebook gradio grand_tour gslider
  gtable gtkIdleRemove guided_tour gwindow holes lda_pp little_tour
  local_tour ozone par pda_pp rainbow_hcl rescale rgb sphere svalue
  svalue<- tooltip<- visible<-
Consider adding
  importFrom("grDevices", "dev.control", "dev.cur", "dev.list",
             "dev.new", "rgb")
  importFrom("graphics", "par")
to your NAMESPACE file.

toxboot (0.1.1)

Maintainer: Eric D. Watt eric@ericdwatt.com
Bug reports: https://github.com/ericwatt/toxboot/issues

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘rmongodb’

trackeR (0.0.4)

Maintainer: Hannah Frick h.frick@ucl.ac.uk
Bug reports: https://github.com/hfrick/trackeR/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

Loading required package: ggplot2

Attaching package: 'trackeR'

The following object is masked from 'package:base':

    append

Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=57.157231,-2.104296&zoom=13&size=640x640&scale=2&maptype=terrain&sensor=false
Quitting from lines 90-91 (TourDetrackeR.Rmd) 
Error: processing vignette 'TourDetrackeR.Rmd' failed with diagnostics:
GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

trapezoid (2.0-0)

Maintainer: Jeremy Thoms Hetzel jthetzel@gmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
rtrapezoid: no visible global function definition for ‘runif’
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.

TreatmentSelection (1.2.0)

Maintainer: Marshall Brown mdbrown@fhcrc.org

0 errors | 0 warnings | 0 notes

treeclim (2.0.0)

Maintainer: Christian Zang christian.zang@wzw.tum.de

0 errors | 0 warnings | 0 notes

treecm (1.2.2)

Maintainer: Marco Bascietto marco.bascietto@entecra.it

0 errors | 0 warnings | 0 notes

treemap (2.4-1)

Maintainer: Martijn Tennekes mtennekes@gmail.com

0 errors | 0 warnings | 0 notes

treescape (1.10.17)

Maintainer: Michelle Kendall m.kendall@imperial.ac.uk

0 errors | 0 warnings | 0 notes

trelliscope (0.9.7)

Maintainer: Ryan Hafen rhafen@gmail.com
Bug reports: https://github.com/delta-rho/trelliscope/issues

0 errors | 0 warnings | 1 note

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

TriMatch (0.9.7)

Maintainer: Jason Bryer jason@bryer.org
Bug reports: https://github.com/jbryer/TriMatch/issues

0 errors | 0 warnings | 0 notes

TripleR (1.5.3)

Maintainer: Felix Schönbrodt felix.schoenbrodt@psy.lmu.de

0 errors | 0 warnings | 0 notes

TSMining (1.0)

Maintainer: Cheng Fan raja8885@hotmail.com

0 errors | 0 warnings | 1 note

checking R code for possible problems ... NOTE
Func.SAX: no visible global function definition for ‘sd’
Func.SAX: no visible global function definition for ‘qnorm’
Func.matrix: no visible global function definition for ‘qnorm’
Func.motif: no visible global function definition for ‘sd’
Func.motif: no visible global function definition for ‘na.omit’
Func.motif: no visible global function definition for ‘combn’
Func.motif.multivariate: no visible global function definition for
  ‘txtProgressBar’
Func.motif.multivariate: no visible global function definition for
  ‘setTxtProgressBar’
Undefined global functions or variables:
  combn na.omit qnorm sd setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "na.omit", "qnorm", "sd")
  importFrom("utils", "combn", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.

tspmeta (1.2)

Maintainer: Bernd Bischl bernd_bischl@gmx.net
Bug reports: https://github.com/berndbischl/tspmeta/issues

0 errors | 0 warnings | 0 notes

TSS.RESTREND (0.1.02)

Maintainer: Arden Burrell arden.burrell@unsw.edu.au

0 errors | 0 warnings | 1 note

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘gimms’

tufterhandout (1.2.1)

Maintainer: Michael C Sachs sachsmc@gmail.com
Bug reports: http://github.com/sachsmc/tufterhandout/issues

0 errors | 0 warnings | 1 note

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

tvm (0.3.0)

Maintainer: Juan Manuel Truppia jmtruppia@gmail.com

0 errors | 0 warnings | 0 notes

tweet2r (1.0)

Maintainer: Pau Aragó parago@uji.es

0 errors | 0 warnings | 0 notes

ubeR (0.1.3)

Maintainer: Andrew Collier andrew@exegetic.biz
Bug reports: https://github.com/DataWookie/ubeR/issues

0 errors | 0 warnings | 0 notes

UBL (0.0.5)

Maintainer: Paula Branco paobranco@gmail.com
Bug reports: https://github.com/paobranco/UBL/issues

1 error | 0 warnings | 0 notes

checking whether package ‘UBL’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/UBL.Rcheck/00install.out’ for details.

ukgasapi (0.13)

Maintainer: Timothy Wong timothy.wong@hotmail.co.uk
Bug reports: https://github.com/timothy-wong/ukgasapi/issues

0 errors | 0 warnings | 1 note

checking Rd line widths ... NOTE
Rd file 'dataItemExplorer.Rd':
  \usage lines wider than 90 characters:
       apiurl = "http://marketinformation.natgrid.co.uk/MIPIws-public/public/publicwebservice.asmx")

These lines will be truncated in the PDF manual.

unvotes (0.1.0)

Maintainer: David Robinson admiral.david@gmail.com
Bug reports: http://github.com/dgrtwo/unvotes/issues

0 errors | 0 warnings | 0 notes

UpSetR (1.3.0)

Maintainer: Jake Conway jake_conway@student.uml.edu
Bug reports: http://github.com/hms-dbmi/UpSetR/issues

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in readLines(input, encoding = "UTF-8") :
  incomplete final line found on '_output.yaml'
Warning in readLines(input, encoding = "UTF-8") :
  incomplete final line found on '_output.yaml'
Warning in readLines(input, encoding = "UTF-8") :
  incomplete final line found on '_output.yaml'
Warning in readLines(input, encoding = "UTF-8") :
  incomplete final line found on '_output.yaml'
Quitting from lines 77-78 (set.metadata.plots.Rmd) 
Error: processing vignette 'set.metadata.plots.Rmd' failed with diagnostics:
formal argument "axis.title.x" matched by multiple actual arguments
Execution halted


checking R code for possible problems ... NOTE
metadataHeat: possible error in theme(panel.background =
  element_rect("white"), plot.title = element_text(margin = margin(b =
  titleAdjustment), hjust = 0, size = 9.25, angle = 90), plot.margin =
  unit(c(0, 0, 0, 0), "lines"), axis.title.x = element_text(size =
  8.3), legend.position = "none", axis.line = element_blank(),
  axis.line = element_line(colour = "gray0"), axis.line.y =
  element_blank(), axis.line.x = element_line(colour = "gray0", size =
  0.3), axis.text.y = element_blank(), axis.ticks.y = element_blank(),
  axis.title.y = element_blank(), : formal argument "axis.title.x"
... 7 lines ...
  titleAdjustment), hjust = 0, size = 8.3, angle = 90), plot.margin =
  unit(c(0, 0, 0, 0), "lines"), axis.title.x = element_text(size = 7),
  legend.position = "none", axis.line = element_blank(), axis.line =
  element_line(colour = "gray0"), axis.line.y = element_blank(),
  axis.line.x = element_line(colour = "gray0", size = 0.3), axis.text.y
  = element_blank(), axis.ticks.y = element_blank(), axis.title.y =
  element_blank(), : formal argument "axis.title.x" matched by multiple
  actual arguments
metadataText: possible error in axis.text.x = element_blank(),
  axis.ticks.x = element_blank(), axis.title.x = element_blank()):
  formal argument "axis.title.x" matched by multiple actual arguments

useful (1.2.1)

Maintainer: Jared P. Lander packages@jaredlander.com

0 errors | 0 warnings | 0 notes

userfriendlyscience (0.4-1)

Maintainer: Gjalt-Jorn Peters gjalt-jorn@userfriendlyscience.com

1 error | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘userfriendlyscience-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: asymmetricalScatterMatrix
> ### Title: asymmetricalScatterMatrix
> ### Aliases: asymmetricalScatterMatrix
> ### Keywords: misc
> 
> ### ** Examples
> 
> asymmetricalScatterMatrix(infert, cols=c("parity", "age"),
+                           rows=c("induced", "case", "spontaneous"),
+                           showCorrelations="top-right");
Error in theme(axis.text = element_text(colour = "#000000", size = rel(0.8)),  : 
  formal argument "strip.background" matched by multiple actual arguments
Calls: asymmetricalScatterMatrix ... dlvTheme -> %+replace% -> is.theme -> inherits -> theme
Execution halted

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

checking R code for possible problems ... NOTE
didacticPlotTheme: possible error in theme(axis.text =
  element_text(colour = "#000000", size = rel(0.8)), axis.ticks =
  element_line(colour = "black"), legend.text = element_text(size =
  rel(0.6)), legend.key = element_rect(colour = "grey80"),
  legend.position = "top", legend.direction = "horizontal",
  legend.key.size = unit(6, "mm"), panel.background = element_rect(fill
  = "white", colour = NA), panel.border = element_rect(fill = NA,
  colour = "grey50"), panel.grid.major = element_line(colour =
  "grey90", size = 0.2), panel.grid.minor = element_line(colour =
... 13 lines ...
  legend.key.size = unit(6, "mm"), panel.background = element_rect(fill
  = "white", colour = NA), panel.border = element_rect(fill = NA,
  colour = "grey50"), panel.grid.major = element_line(colour =
  "grey90", size = 0.2), : formal argument "strip.background" matched
  by multiple actual arguments
dlvTheme: possible error in panel.grid.minor = element_line(colour =
  "grey98", size = 0.5), strip.background = element_rect(fill =
  "grey80", colour = "grey50"), strip.background = element_rect(fill =
  "grey80", colour = "grey50"), panel.margin = unit(c(0.5), "cm"),
  ...): formal argument "strip.background" matched by multiple actual
  arguments

UsingR (2.0-5)

Maintainer: John Verzani verzani@math.csi.cuny.edu

1 error | 0 warnings | 0 notes

checking whether package ‘UsingR’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/UsingR.Rcheck/00install.out’ for details.

varian (0.2.2)

Maintainer: Joshua F. Wiley josh@elkhartgroup.com
Bug reports: https://github.com/ElkhartGroup/varian/issues

0 errors | 0 warnings | 0 notes

vcdExtra (0.7-0)

Maintainer: Michael Friendly friendly@yorku.ca

0 errors | 0 warnings | 1 note

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘alr3’

vcfR (1.2.0)

Maintainer: Brian J. Knaus briank.lists@gmail.com

0 errors | 0 warnings | 0 notes

VDAP (2.0.0)

Maintainer: Cody Moore Jumper9400@gmail.com

0 errors | 0 warnings | 0 notes

vdg (1.2.0)

Maintainer: Pieter Schoonees schoonees@gmail.com

0 errors | 0 warnings | 0 notes

vdmR (0.2.2)

Maintainer: Tomokazu Fujino fujino@fwu.ac.jp

2 errors | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘vdmR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: vhist
> ### Title: Generate histogram with interactive functions
> ### Aliases: vhist
> 
> ### ** Examples
> 
> data(vsfuk2012)
> vhist(FertilityRate, vsfuk2012, "hist1", "vsfuk2012", fill=Type)
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Error in grid.Call.graphics(L_downviewport, name$name, strict) : 
  Viewport 'panel.3-4-3-4' was not found
Calls: vhist ... downViewport -> downViewport.vpPath -> grid.Call.graphics
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/run-all.R’ failed.
Last 13 lines of output:
  Viewport 'panel.3-4-3-4' was not found
  1: vhist(Sepal.Length, iris, "hist01", "iris", fill = Species) at /Users/hadley/Documents/ggplot/ggplot2/revdep/checks/vdmR.Rcheck/vdmR/tests/test-vdmR.R:7
  2: grid::downViewport("panel.3-4-3-4")
  3: downViewport.default("panel.3-4-3-4")
  4: downViewport(vpPath(name), strict, recording = recording)
  5: downViewport.vpPath(vpPath(name), strict, recording = recording)
  6: grid.Call.graphics(L_downviewport, name$name, strict)
  
  DONE ===========================================================================
  Error: Test failures
  In addition: Warning message:
  Placing tests in `inst/tests/` is deprecated. Please use `tests/testthat/` instead 
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Quitting from lines 40-42 (vdmR-vignette.Rnw) 
Error: processing vignette 'vdmR-vignette.Rnw' failed with diagnostics:
Viewport 'panel.3-4-3-4' was not found
Execution halted

VetResearchLMM (0.1.0)

Maintainer: Muhammad Yaseen myaseen208@gmail.com

0 errors | 0 warnings | 0 notes

vipor (0.4.4)

Maintainer: Scott Sherrill-Mix shescott@upenn.edu

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: sm
Package 'sm', version 2.2-5.4: type help(sm) for summary information
Loading required package: ggplot2
Error: processing vignette 'usageExamples.Rnw' failed with diagnostics:
PositionQuasirandom was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

viridis (0.3.4)

Maintainer: Simon Garnier garnier@njit.edu
Bug reports: https://github.com/sjmgarnier/viridis/issues

0 errors | 0 warnings | 0 notes

viridisLite (0.1.3)

Maintainer: Simon Garnier garnier@njit.edu
Bug reports: https://github.com/sjmgarnier/viridisLite/issues

0 errors | 0 warnings | 0 notes

visreg (2.3-0)

Maintainer: Patrick Breheny patrick-breheny@uiowa.edu

0 errors | 0 warnings | 0 notes

vmsbase (2.1.3)

Maintainer: Lorenzo D'Andrea support@vmsbase.org

1 error | 0 warnings | 0 notes

checking whether package ‘vmsbase’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/vmsbase.Rcheck/00install.out’ for details.

voxel (1.2.1)

Maintainer: Angel Garcia de la Garza agarciadlg@gmail.com

0 errors | 0 warnings | 0 notes

vrcp (0.1.1)

Maintainer: Yulei Wang yxw390@case.edu

0 errors | 0 warnings | 0 notes

VRPM (1.1)

Maintainer: Vanya Van Belle vanya.vanbelle@esat.kuleuven.be

0 errors | 0 warnings | 0 notes

VSE (0.99)

Maintainer: Hansen He hansenhe@uhnresearch.ca

0 errors | 0 warnings | 0 notes

vtreat (0.5.28)

Maintainer: John Mount jmount@win-vector.com
Bug reports: https://github.com/WinVector/vtreat/issues

0 errors | 0 warnings | 0 notes

VWPre (0.9.0)

Maintainer: Vincent Porretta vincentporretta@gmail.com

0 errors | 0 warnings | 0 notes

waffle (0.6.0)

Maintainer: Bob Rudis bob@rud.is
Bug reports: https://github.com/hrbrmstr/waffle/issues

0 errors | 0 warnings | 0 notes

wakefield (0.3.0)

Maintainer: Tyler Rinker tyler.rinker@gmail.com
Bug reports: https://github.com/trinker/wakefield/issues

0 errors | 0 warnings | 0 notes

walkr (0.3.3)

Maintainer: Andy Yao andy.yao17@gmail.com
Bug reports: https://github.com/andyyao95/walkr/issues

0 errors | 0 warnings | 0 notes

warbleR (1.1.2)

Maintainer: Marcelo Araya-Salas araya-salas@cornell.edu

0 errors | 0 warnings | 1 note

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘monitoR’

waterfalls (0.1.0)

Maintainer: Hugh Parsonage hugh.parsonage+waterfall@gmail.com

0 errors | 0 warnings | 0 notes

Wats (0.10.3)

Maintainer: Will Beasley wibeasley@hotmail.com
Bug reports: https://github.com/OuhscBbmc/Wats/issues

0 errors | 0 warnings | 0 notes

wbstats (0.1)

Maintainer: Jesse Piburn piburnjo@ornl.gov

0 errors | 0 warnings | 0 notes

wesanderson (0.3.2)

Maintainer: Karthik Ram karthik.ram@gmail.com
Bug reports: https://github.com/karthik/wesanderson/issues

0 errors | 0 warnings | 2 notes

checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.

checking R code for possible problems ... NOTE
print.palette: no visible global function definition for ‘par’
print.palette: no visible global function definition for ‘image’
print.palette: no visible global function definition for ‘rect’
print.palette: no visible global function definition for ‘rgb’
print.palette: no visible global function definition for ‘text’
wes_palette: no visible global function definition for
  ‘colorRampPalette’
Undefined global functions or variables:
  colorRampPalette image par rect rgb text
Consider adding
  importFrom("grDevices", "colorRampPalette", "rgb")
  importFrom("graphics", "image", "par", "rect", "text")
to your NAMESPACE file.

WHO (0.2)

Maintainer: Eric Persson expersso5@gmail.com
Bug reports: https://www.github.com/expersso/WHO/issues

0 errors | 0 warnings | 0 notes

wikipediatrend (1.1.10)

Maintainer: Peter Meissner retep.meissner@gmail.com
Bug reports: https://github.com/petermeissner/wikipediatrend/issues

0 errors | 0 warnings | 1 note

checking package dependencies ... NOTE
Packages suggested but not available for checking:
  ‘AnomalyDetection’ ‘BreakoutDetection’

wordbankr (0.2.0)

Maintainer: Mika Braginsky mika.br@gmail.com
Bug reports: http://github.com/langcog/wordbankr/issues

0 errors | 0 warnings | 0 notes

wppExplorer (2.0-0)

Maintainer: Hana Sevcikova hanas@uw.edu

0 errors | 0 warnings | 0 notes

wrswoR.benchmark (0.1-1)

Maintainer: Kirill Müller krlmlr+r@mailbox.org
Bug reports: https://github.com/krlmlr/wrswoR.benchmark/issues

0 errors | 0 warnings | 0 notes

wrswoR (1.0-1)

Maintainer: Kirill Müller krlmlr+r@mailbox.org
Bug reports: https://github.com/krlmlr/wrswoR/issues

0 errors | 0 warnings | 0 notes

x.ent (1.1.2)

Maintainer: Tien T. Phan phantien84@gmail.com
Bug reports: https://github.com/tienpt/x.ent/issues

1 error | 0 warnings | 0 notes

checking whether package ‘x.ent’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/x.ent.Rcheck/00install.out’ for details.

xgboost (0.4-4)

Maintainer: Tong He hetong007@gmail.com
Bug reports: https://github.com/dmlc/xgboost/issues

0 errors | 0 warnings | 0 notes

XGR (1.0.4)

Maintainer: Hai Fang hfang@well.ox.ac.uk

1 error | 0 warnings | 0 notes

checking whether package ‘XGR’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/XGR.Rcheck/00install.out’ for details.

xkcd (0.0.5)

Maintainer: Emilio Torres-Manzanera torres@uniovi.es

0 errors | 0 warnings | 0 notes

XLConnect (0.2-12)

Maintainer: Martin Studer martin.studer@mirai-solutions.com
Bug reports: https://github.com/miraisolutions/xlconnect/issues

1 error | 0 warnings | 0 notes

checking whether package ‘XLConnect’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/XLConnect.Rcheck/00install.out’ for details.

xtractomatic (3.1.1)

Maintainer: Roy Mendelssohn roy.mendelssohn@noaa.gov
Bug reports: http://www.github.com/rmendels/xtractomatic/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
date	lon	lat	lowLon	higLon	lowLat	higLat
4/23/2003	203.899	19.664	203.899	203.899	19.664	19.664
4/24/2003	204.151	19.821	203.912597	204.389403	18.78051934	20.86148066
4/30/2003	203.919	20.351	203.6793669	204.1586331	18.79728188	21.90471812
5/1/2003	204.229	20.305	203.9943343	204.4636657	18.90440013	21.70559987
Warning: Removed 308 rows containing missing values (geom_path).
Warning: Removed 308 rows containing missing values (geom_path).
Quitting from lines 528-535 (Usingxtractomatic.Rmd) 
Error: processing vignette 'Usingxtractomatic.Rmd' failed with diagnostics:
cannot open the connection
Execution halted

xxIRT (1.1.0)

Maintainer: Xiao Luo xluo1986@gmail.com
Bug reports: http://github.com/xluo11/xxIRT

0 errors | 0 warnings | 0 notes

yorkr (0.0.5)

Maintainer: Tinniam V Ganesh tvganesh.85@gmail.com

0 errors | 0 warnings | 0 notes

zebu (0.1.0)

Maintainer: Olivier M. F. Martin olivmrtn@gmail.com
Bug reports: https://github.com/olivmrtn/zebu/issues

0 errors | 0 warnings | 0 notes

zoo (1.7-13)

Maintainer: Achim Zeileis Achim.Zeileis@R-project.org

0 errors | 0 warnings | 0 notes

zooaRch (1.2)

Maintainer: Erik Otarola-Castillo eotarolacastillo@fas.harvard.edu

0 errors | 0 warnings | 0 notes