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Analysis scripts for JCI Insight paper
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NexteraPE-PE.fa
README.md
ani.sh
assemble_all.sh
assemble_all2.sh
centrifuge.sh
count_snps.R
mv_assembly.sh
parsnp_assembled.sh
parsnp_cons.sh
pks.sh
sears_fmt.sh
sears_fmt_parsnp.sh

README.md

drewes_fmt

Analysis scripts for JCI Insight paper

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