R package with utility functions to help with data analysis
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R Added New Function Nov 30, 2016
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README.md

tinyutils

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R package with utility functions to help with data analysis

How to Install

The preferred way to install this package is through conda:

conda install -c fongchun r-tinyutils

Alternatively, you can install this through use devtools:

devtools::install_github("tinyheero/tinyutils", upgrade_dependencies = FALSE)

Some functions require some bioconductor packages in order to work. As this package is not part of bioconductor, devtools will not automatically install it for you (see this thread for more details). You will have to install them manually:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicRanges")
biocLite("Rsamtools")

You can also install this through bioconda:

conda install r-devtools bioconductor-genomicranges bioconductor-rsamtools
devtools::install_github("tinyheero/tinyutils", upgrade_dependencies = FALSE)

Overview

To see the full list of exported functions:

library("tinyutils")
ls("package:tinyutils")

A quick overview of some of the key functions:

  • plot_feature_sample_mat: Plots a co-occurence (i.e. feature-sample) matrix plot.

    This function has been deprecated. It has been moved to the cofeatureR package and renamed to plot_cofeature_mat.

  • make_presence_absence_mat: Create a presence/asbence (PA) matrix