From b7075663b683e9b9f4c96c6845b8bb42f02e700d Mon Sep 17 00:00:00 2001
From: Takafumi Arakaki <aka.tkf@gmail.com>
Date: Thu, 21 Mar 2019 20:55:52 -0700
Subject: [PATCH] Do not use link reference definition

as it's not supported by Julia's Markdown parser
---
 docs/src/examples/calcium.md      | 12 +++++++-----
 docs/src/examples/morris_lecar.md |  7 +++----
 docs/src/examples/van_der_pol.md  |  4 +---
 3 files changed, 11 insertions(+), 12 deletions(-)

diff --git a/docs/src/examples/calcium.md b/docs/src/examples/calcium.md
index 4b4318d..3fbadb0 100644
--- a/docs/src/examples/calcium.md
+++ b/docs/src/examples/calcium.md
@@ -6,7 +6,9 @@ Calcium channel model taken from PyDSTool example.  See:
 * [Tutorial - PyDSTool Wiki](http://www2.gsu.edu/~matrhc/Tutorial.html)
 * [Bifurcation Analysis · DifferentialEquations.jl](http://docs.juliadiffeq.org/latest/analysis/bifurcation.html)
 
-Use [`QuickTypes.@qstruct_fp`][QuickTypes] to define model parameter:
+Use
+[`QuickTypes.@qstruct_fp`](https://github.com/cstjean/QuickTypes.jl)
+to define model parameter:
 
 ```@example calcium
 using QuickTypes: @qstruct_fp
@@ -25,7 +27,8 @@ using QuickTypes: @qstruct_fp
 nothing # hide
 ```
 
-Define the model as in [DifferentialEquations.jl][ODEProblem]:
+Define the model as in
+[DifferentialEquations.jl](http://docs.juliadiffeq.org/latest/tutorials/ode_example.html):
 
 ```@example calcium
 using Parameters: @unpack
@@ -40,7 +43,8 @@ function f(u, p::CalciumParam, t)
 end
 ```
 
-Create an [`ODEProblem`][ODEProblem]:
+Create an
+[`ODEProblem`](http://docs.juliadiffeq.org/latest/tutorials/ode_example.html):
 
 ```@example calcium
 using DiffEqBase: ODEProblem
@@ -116,6 +120,4 @@ savefig(plt2, "calcium-2.png"); nothing # hide
 ![](calcium-2.png)
 
 
-[QuickTypes]: https://github.com/cstjean/QuickTypes.jl
 
-[ODEProblem]: http://docs.juliadiffeq.org/latest/tutorials/ode_example.html
diff --git a/docs/src/examples/morris_lecar.md b/docs/src/examples/morris_lecar.md
index db41047..e1e9acb 100644
--- a/docs/src/examples/morris_lecar.md
+++ b/docs/src/examples/morris_lecar.md
@@ -1,12 +1,11 @@
 # Modified Morris-Lecar model
 
-Modified Morris-Lecar model from [Dhooge, Govaerts, Kuznetsov (2003)]:
+Modified Morris-Lecar model from
+[Dhooge, Govaerts, Kuznetsov (2003)](https://doi.org/10.1007/3-540-44860-8_72):
 
-* [Dhooge, Govaerts, Kuznetsov (2003)].
+* Dhooge, Govaerts, Kuznetsov (2003).
   Numerical Continuation of Fold Bifurcations of Limit Cycles in MATCONT
 
-[Dhooge, Govaerts, Kuznetsov (2003)]: https://doi.org/10.1007/3-540-44860-8_72
-
 ```@example morris_lecar
 using Bifurcations
 using Bifurcations: special_intervals
diff --git a/docs/src/examples/van_der_pol.md b/docs/src/examples/van_der_pol.md
index 96bf090..7bf1a8c 100644
--- a/docs/src/examples/van_der_pol.md
+++ b/docs/src/examples/van_der_pol.md
@@ -9,9 +9,7 @@ using Plots
 using OrdinaryDiffEq: Tsit5, remake
 ```
 
-Create an [`ODEProblem`][ODEProblem] and solve it:
-
-[ODEProblem]: http://docs.juliadiffeq.org/latest/tutorials/ode_example.html
+Create an [`ODEProblem`](http://docs.juliadiffeq.org/latest/tutorials/ode_example.html) and solve it:
 
 ```@example van_der_pol
 ode = remake(