Brain PET analysis pipeline
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Gunn1997_nifti_mask.m
LICENSE
MRIqc.m
PSVsmooth_3d.m
PatlakPlasma_nifti.m
PatlakRef_nifti.m
README.md
add_postfix.m
add_prefix.m
add_to_qc_pic.m
aivo_check_found.m
aivo_connect.m
aivo_extract_birthday.m
aivo_extract_gender.m
aivo_get_info.m
aivo_get_isotope_from_tracer.m
aivo_get_subjects.m
aivo_get_subjects_dev.m
aivo_import.m
aivo_parse_me.m
aivo_read_2tcm_modeling_options.m
aivo_read_fur_modeling_options.m
aivo_read_modeling_options.m
aivo_read_patlak_modeling_options.m
aivo_read_patlak_ref_modeling_options.m
aivo_read_srtm_modeling_options.m
aivo_read_suvr_dyn_modeling_options.m
aivo_read_suvr_modeling_options.m
aivo_set_info.m
aivo_set_modeling_options.m
aivo_store_magia_info.m
anatomical_reference_region_correction2.m
archive_results_new.m
calculate_auc_ratio.m
calculate_fur.m
calculate_fur_integral.m
calculate_input_boundaries.m
calculate_parametric_images.m
calculate_roi_tacs.m
calculate_static_ratio.m
center_image.m
center_image2.m
cg_set_com_mod.m
check_megabase_conn.m
convert_ecat2nii.m
convert_to_nifti.m
coreg_qc.m
create_brainmask.m
create_roi_masks2.m
create_specific_binding_mask.m
data_driven_reference_region_correction_fwhm.m
decay_correct_to_injection_time.m
fit_gaussian_mixture.m
fit_srtm.m
force_ras.m
get_atlas_rois.m
get_filenames.m
get_frame_string.m
get_ref_tac.m
get_roi_masks.m
get_tracer_default_roi_set.m
get_voxel_time_series.m
input_qc.m
magia_2tcm_3.m
magia_archive_results.m
magia_calculate_fur.m
magia_calculate_fur_image.m
magia_calculate_input_boundaries.m
magia_check_found.m
magia_check_freesurfed.m
magia_check_metadata.m
magia_check_mri_found.m
magia_check_plasma_found.m
magia_check_reversed.m
magia_clean_files.m
magia_combine_seg_and_bs.m
magia_convert_to_nifti.m
magia_correct_rois.m
magia_create_roi_masks_from_aal_template.m
magia_dev_test.m
magia_fit_2tcm_iterative.m
magia_fit_patlak_ref.m
magia_get_2tcm_default_options.m
magia_get_default_model.m
magia_get_fur_default_options.m
magia_get_githash.m
magia_get_patlak_default_options.m
magia_get_patlak_ref_default_options.m
magia_get_pet_file.m
magia_get_pet_units.m
magia_get_ref_region.m
magia_get_roi_info.m
magia_get_srtm_default_options.m
magia_get_suvr_default_options.m
magia_get_suvr_dyn_default_options.m
magia_identify_bad_frames.m
magia_input_qc.m
magia_max_consecutive_values.m
magia_medfilter.m
magia_medfilter_slice.m
magia_metadata_from_aivo.m
magia_parse_me.m
magia_processor.m
magia_read_plasma.m
magia_recon_all.m
magia_roi_correction.m
magia_suvr.m
magia_suvr_dyn.m
magia_suvr_dyn_image.m
magia_suvr_image.m
magia_suvr_static_image.m
magia_test_dyn.m
magia_write_githash.m
magia_write_modeling_options2.m
metpet_fill_brain_img.m
metpet_fill_line.m
metpet_fill_slice.m
metpet_fit_patlak.m
metpet_fit_srtm_iterative.m
metpet_random_init_srtm.m
metpet_read_plasma_data.m
motion_correction.m
motion_parameter_qc.m
mri_histogram_qc.m
normalize_using_mri.m
normalize_using_template.m
parametric_image_qc.m
parse_frames_string.m
plotshaded.m
ppval.mexa64
process_mri.m
read_plasma.m
read_plasma_dft.m
remove_nonspecific_binding_from_rois.m
roi_bars.m
roi_fitting.m
run_magia.m
run_magia_dev.m
shrink_cer.m
shrink_oc_new.m
simSRTM_1_0_0.m
smooth_img.m
spm_coregister_estimate.m
spm_coregister_reslice.m
spm_dcm2nii_2.m
spm_nifti_dynamize.m
spm_segment.m
spm_write_4d_nifti.m
visualize_fits.m
visualize_tacs.m

README.md

magia

Brain PET analysis pipeline

Automatic analysis pipeline.