Skip to content
RNA modifications detection from Nanopore dRNA-Seq data
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.


Type Name Latest commit message Commit time
Failed to load latest commit information.
tests Sim read sd (#100) Jun 21, 2019
.gitignore Sim read sd (#100) Jun 21, 2019
.travis.yml Fixed CLI entrypoint bug Jun 26, 2019 Sim read sd (#100) Jun 21, 2019 Sim read sd (#100) Jun 21, 2019
LICENSE Sim read sd (#100) Jun 21, 2019 Docs update (#117) Dec 18, 2019


GitHub license Python BioRxiv

PyPI version Downloads Build Status

Nanocompore identifies differences in ONT nanopore sequencing raw signal corresponding to RNA modifications by comparing 2 samples

Nanocompore compares 2 ONT nanopore direct RNA sequencing datasets from different experimental conditions expected to have a significant impact on RNA modifications. It is recommended to have at least 2 replicates per condition. For example one can use a control condition with a significantly reduced number of modifications such as a cell line for which a modification writing enzyme was knocked-down or knocked-out. Alternatively, on a smaller scale transcripts of interests could be synthesized in-vitro.

Full documentation is available at


Companion repositories

Main authors

  • Tommaso Leonardi - tom {at}
  • Adrien Leger - aleg {at}
You can’t perform that action at this time.