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Describe the bug
Ok, after looking into the issue it looks like the problem is caused by the lowCoverage check of TxComp.
Additionally, I've noticed that there's another error:
This block completely ignores the lowCov positions, so if we have something like:
The solution is to set the p-values of the lowCov positions to 1 when filling the pval_list_dict list.
* Added empty changelog * Small doc changes * Typo and reformat doc * Fixed issue #68 * Added travis file * Added branches safelist * Removed python 3.2 * Added devel branch to travis safelist * Updated pytest version * Replcated tmpdir_factory with tmp_path_factory * Fixed python version compatibility * Fixed syntax error * Casting pathlib objects to string for compatibility with python3.5 * Fixed python 3.5 compatibility error * Fixed issue #68 * Removed trailing whitespace * Added travis badge * Skip many integration tests if running inside Travis * Added conditional workflow for 3.5 version * Lowered p-value tolerance for python 3.5 * Fixed typos in checking python version * nbconvert is now installed bebore mknotebooks * Further tolerance adjustment for python3.5 * Updated Changelog * Clean up of travis yml file * Added Slack notifications and automatic gh-pages deployment (#78) * Updated release data and bumped version number * Add Changelog to doc (#81) * Workaround for issue #82