Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root

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output		output
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01-BR-03-WT_atlas_updated_dev_anno_GO.html		01-BR-03-WT_atlas_updated_dev_anno_GO.html
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03-bri1-02-pGL2-BRI1-GFP-bri1-T_vs_WT-pseudobulk-DE.ipynb		03-bri1-02-pGL2-BRI1-GFP-bri1-T_vs_WT-pseudobulk-DE.ipynb
03-bri1-03-pGL2-BRI1-GFP-bri1-T_vs_bri1-T-pseudobulk-DE.ipynb		03-bri1-03-pGL2-BRI1-GFP-bri1-T_vs_bri1-T-pseudobulk-DE.ipynb
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03-bri1-05-bri1-T_MDS.ipynb		03-bri1-05-bri1-T_MDS.ipynb
03-bri1-06-bri1-DEG-barplots-and-GO.ipynb		03-bri1-06-bri1-DEG-barplots-and-GO.ipynb
03-bri1-07-bri1-T_vs_WT-cortex-abundance.ipynb		03-bri1-07-bri1-T_vs_WT-cortex-abundance.ipynb
04-BRZ-WT-BRZ-vs-Control-pseudobulk-DE.ipynb		04-BRZ-WT-BRZ-vs-Control-pseudobulk-DE.ipynb
05-163-core-BR-DEGs-01-UpSet-plots.ipynb		05-163-core-BR-DEGs-01-UpSet-plots.ipynb
05-163-core-BR-DEGs-02-plot-heatmaps.ipynb		05-163-core-BR-DEGs-02-plot-heatmaps.ipynb
06-GRNs-01-CellOracle-baseGRN.ipynb.ipynb		06-GRNs-01-CellOracle-baseGRN.ipynb.ipynb
06-GRNs-02-CellOracle-WT-GRN-configs.ipynb		06-GRNs-02-CellOracle-WT-GRN-configs.ipynb
06-GRNs-03-CellOracle-BR-GRN-configs.ipynb		06-GRNs-03-CellOracle-BR-GRN-configs.ipynb
06-GRNs-04-CellOracle-HAT7-GTL1-plotting.ipynb		06-GRNs-04-CellOracle-HAT7-GTL1-plotting.ipynb
06-GRNs-05-gtl1-hat7-quad-cell-length-plots.ipynb		06-GRNs-05-gtl1-hat7-quad-cell-length-plots.ipynb
06-GRNs-06-CellOracle-vs-bulk-GRN.ipynb		06-GRNs-06-CellOracle-vs-bulk-GRN.ipynb
06-GRNs-07-MYB30-plots.ipynb		06-GRNs-07-MYB30-plots.ipynb
07-gtl1df1-01-gtl1df1_umaps.ipynb		07-gtl1df1-01-gtl1df1_umaps.ipynb
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07-gtl1df1-03-gtl1_vs_WT-pseudobulk-DE.ipynb		07-gtl1df1-03-gtl1_vs_WT-pseudobulk-DE.ipynb
07-gtl1df1-04-df1_vs_WT-pseudobulk-DE.ipynb		07-gtl1df1-04-df1_vs_WT-pseudobulk-DE.ipynb
07-gtl1df1-05-DEGs-barplots-and-GO.ipynb		07-gtl1df1-05-DEGs-barplots-and-GO.ipynb
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ARVEX_Plots.ipynb		ARVEX_Plots.ipynb
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Base-01-GRN_preparation_for_CellOracle.html		Base-01-GRN_preparation_for_CellOracle.html
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Base-02-GRN_preparation_for_CellOracle.html		Base-02-GRN_preparation_for_CellOracle.html
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Base-03-GRN_preparation_for_CellOracle.html		Base-03-GRN_preparation_for_CellOracle.html
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Label_transfer.html		Label_transfer.html
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README.md		README.md
Tradeseq_BR_time_course.html		Tradeseq_BR_time_course.html
Tradeseq_BR_time_course.ipynb		Tradeseq_BR_time_course.ipynb
wot1-compute-trajectories.ipynb		wot1-compute-trajectories.ipynb
wot2-analyze-results.ipynb		wot2-analyze-results.ipynb

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Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root

Arabidopsis Root Virtual Expression eXplorer (ARVEX)

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