BAM Statistics, Feature Counting and Annotation
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Alfred: BAM alignment statistics, feature counting and feature annotation

Alfred is available as a Bioconda package, as a statically linked binary from the GitHub release page or as a minimal Docker container. Please have a look at Alfred's documentation for any installation or usage questions.

Source Code

Web Application



Tobias Rausch, Markus Hsi-Yang Fritz, Jan O Korbel, Vladimir Benes.
Alfred: Interactive multi-sample BAM alignment statistics, feature counting and feature annotation for long- and short-read sequencing.