Skip to content
master
Switch branches/tags
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
R
 
 
 
 
 
 
 
 
src
 
 
vep
 
 
 
 
 
 
 
 
 
 
 
 

nRex

nRex is a germline & somatic single-nucleotide variant calling method.

Installing nRex

git clone --recursive https://github.com/tobiasrausch/nRex.git

cd nRex/

make all

Build BED file with chromosomes and exonic regions for QC

cd R/ && Rscript exon.R

Running nRex

./src/nRex.sh <hg19.wgs|hg19.wes|hg19.haloplex> <genome.fa> <output prefix> <sample1.read1.fq.gz> <sample1.read2.fq.gz>