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Merge branch 'master' of ssh://gitlab.eccenca.com:8101/rdb2rdf/client

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	build.gradle
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2 parents f36b8f9 + ab62fb1 commit b14d19de3235aec47ee46fb8bab14548810ad137 @tomatophantastico committed Apr 22, 2015
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  1. +1 −0 .gitignore
  2. +54 −0 README.md
  3. BIN gradle/wrapper/gradle-wrapper.jar
  4. +6 −0 gradle/wrapper/gradle-wrapper.properties
  5. +164 −0 gradlew
  6. +90 −0 gradlew.bat
  7. +50 −0 libraries.gradle
  8. +138 −0 quality/checkstyle/checkstyle-noframes.xsl
  9. +128 −0 quality/checkstyle/checkstyle.xml
  10. +251 −0 quality/formatter/Eclipse-formatter.xml
  11. 0 quality/licences/HEADER
  12. +12 −0 settings.gradle
  13. +7 −0 sparqlmap-cli/build.gradle
  14. +406 −0 sparqlmap-cli/src/main/java/sparqlmap.java
  15. +68 −0 sparqlmap-cli/src/main/resources/log4j.properties
  16. +6 −0 sparqlmap-cli/src/main/resources/log4j.properties.quiet
  17. +95 −0 sparqlmap-cli/src/sample-data/bsbm2-data-100k.sql
  18. +249 −0 sparqlmap-cli/src/sample-data/bsbm2-schema_constraints.sql
  19. +199 −0 sparqlmap-cli/src/sample-data/bsbm2-schema_noconstraints.sql
  20. +165 −0 sparqlmap-cli/src/test/java/dumpTest.java
  21. +6 −0 sparqlmap-cli/src/test/resources/map-conf/db.properties
  22. +551 −0 sparqlmap-cli/src/test/resources/map-conf/mapping.ttl
  23. +9 −0 sparqlmap-cli/src/test/resources/map-conf/sparqlmap.properties
  24. +24 −0 sparqlmap-web/build.gradle
  25. +55 −0 sparqlmap-web/src/assembly/distwithjetty.xml
  26. 0 sparqlmap-web/src/assembly/distwithtomcat.xml
  27. +5 −0 sparqlmap-web/src/main/conf/db.properties
  28. +154 −0 sparqlmap-web/src/main/conf/mapping.ttl
  29. +6 −0 sparqlmap-web/src/main/conf/sparqlmap.properties
  30. +26 −0 sparqlmap-web/src/main/java/org/aksw/sparqlmap/web/SparqlMapContextManager.java
  31. +231 −0 sparqlmap-web/src/main/java/org/aksw/sparqlmap/web/SparqlMapWeb.java
  32. +47 −0 sparqlmap-web/src/main/java/org/aksw/sparqlmap/web/negotiation/SparqlRdfXmlResponse.java
  33. +60 −0 sparqlmap-web/src/main/java/org/aksw/sparqlmap/web/spring/WebAppConfig.java
  34. +24 −0 sparqlmap-web/src/main/java/org/aksw/sparqlmap/web/spring/WebAppLoader.java
  35. +58 −0 sparqlmap-web/src/main/resources/log4j.properties
  36. +7 −0 sparqlmap-web/src/main/webapp/WEB-INF/web.xml
  37. +6 −0 sparqlmap-web/src/main/webapp/index.jsp
  38. +77 −0 sparqlmap-web/src/main/webapp/snorql/index.html
  39. BIN sparqlmap-web/src/main/webapp/snorql/link.png
  40. +13 −0 sparqlmap-web/src/main/webapp/snorql/namespaces.js
  41. +4,221 −0 sparqlmap-web/src/main/webapp/snorql/prototype.js
  42. BIN sparqlmap-web/src/main/webapp/snorql/rdf_flyer.24.gif
  43. +136 −0 sparqlmap-web/src/main/webapp/snorql/scriptaculous/builder.js
  44. +965 −0 sparqlmap-web/src/main/webapp/snorql/scriptaculous/controls.js
  45. +974 −0 sparqlmap-web/src/main/webapp/snorql/scriptaculous/dragdrop.js
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  50. +568 −0 sparqlmap-web/src/main/webapp/snorql/scriptaculous/unittest.js
  51. +535 −0 sparqlmap-web/src/main/webapp/snorql/snorql.js
  52. +490 −0 sparqlmap-web/src/main/webapp/snorql/sparql-lib.js
  53. +39 −0 sparqlmap-web/src/main/webapp/snorql/style.css
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.project
*.iml
build
+*.lock
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+#SparqlMap
+
+
+SparqlMap - A SPARQL to SQL rewriter based on [R2RML](http://www.w3.org/TR/r2rml/) specification.
+
+It can be used in allows both extracting RDF from an relational database and rewrite SPARQL queries into SQL.
+
+##Current Status
+
+We have refactored SparqlMap in the last few months a lot.
+The current master branch is not yet ready for prime time, thus no binary release are out yet.
+
+If you want to try out SparqlMap, best use a binary distribution from our [old website] (https://code.google.com/p/sparqlmap/downloads/list).
+
+
+
+##Convert Relational Database into RDF
+
+Most of the time, dump creation will take place on the command line.
+In the binary distributions these can be found in the _bin_ folder.
+The two files of interest are:
+
+```shell
+./bin/dump.sh (1)
+./bin/generateMapping.sh (2)
+```
+
+(1) dump will create an full RDF representation based on a mapping provided.
+(2) will generate that mapping for you, based on the [Direct Mapping](http://www.w3.org/TR/rdb-direct-mapping/) specification. You can use this mapping as a starting point. However, be aware that the full database will be mapped and that the mapping will apear clumsy.
+
+## Rewrite SPARQL queries into SQL
+
+For rewriting SPARQL queries into SQL SparqlMap can expose a SPARQL endpoint by an embedded tomcat.
+The enpoint is started by
+```shell
+java -jar sparqlmap-X.X.X-with-dependencies.jar
+```
+This will expose an SPARQL endpoint with a little snorql interface.
+
+## R2RML conformance
+
+SparqlMap conforms fully with the R2RML specification and was tested with PostgreSQL, MySQL and HSQL.
+The test results can be found in the repository.
+
+## Project Structure
+
+This project has the following sub-folders:
+
+- **sparqlmap-core** The rewriting (and the dumping) mechanics can be found here.
+- **sparqlmap-web** The code for exposing webservices resides here.
+- **sparqlmap-webinterface** The yeoman client-side webinterface is here.
+- **sparqlmap-shared** Common resources, like exemplary mappings, local versions of vocabularies and default config files are here.
+- **sparqlmap-cli** The command line wrapper around thecore.
+- **sparqlmap-r2rmltestcases** The SparqlMap R2RML testrunner and the results of these test are here.
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+#Tue Dec 31 17:54:58 CET 2013
+distributionBase=GRADLE_USER_HOME
+distributionPath=wrapper/dists
+zipStoreBase=GRADLE_USER_HOME
+zipStorePath=wrapper/dists
+distributionUrl=http\://services.gradle.org/distributions/gradle-1.10-bin.zip
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+#!/usr/bin/env bash
+
+##############################################################################
+##
+## Gradle start up script for UN*X
+##
+##############################################################################
+
+# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+DEFAULT_JVM_OPTS=""
+
+APP_NAME="Gradle"
+APP_BASE_NAME=`basename "$0"`
+
+# Use the maximum available, or set MAX_FD != -1 to use that value.
+MAX_FD="maximum"
+
+warn ( ) {
+ echo "$*"
+}
+
+die ( ) {
+ echo
+ echo "$*"
+ echo
+ exit 1
+}
+
+# OS specific support (must be 'true' or 'false').
+cygwin=false
+msys=false
+darwin=false
+case "`uname`" in
+ CYGWIN* )
+ cygwin=true
+ ;;
+ Darwin* )
+ darwin=true
+ ;;
+ MINGW* )
+ msys=true
+ ;;
+esac
+
+# For Cygwin, ensure paths are in UNIX format before anything is touched.
+if $cygwin ; then
+ [ -n "$JAVA_HOME" ] && JAVA_HOME=`cygpath --unix "$JAVA_HOME"`
+fi
+
+# Attempt to set APP_HOME
+# Resolve links: $0 may be a link
+PRG="$0"
+# Need this for relative symlinks.
+while [ -h "$PRG" ] ; do
+ ls=`ls -ld "$PRG"`
+ link=`expr "$ls" : '.*-> \(.*\)$'`
+ if expr "$link" : '/.*' > /dev/null; then
+ PRG="$link"
+ else
+ PRG=`dirname "$PRG"`"/$link"
+ fi
+done
+SAVED="`pwd`"
+cd "`dirname \"$PRG\"`/" >&-
+APP_HOME="`pwd -P`"
+cd "$SAVED" >&-
+
+CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
+
+# Determine the Java command to use to start the JVM.
+if [ -n "$JAVA_HOME" ] ; then
+ if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
+ # IBM's JDK on AIX uses strange locations for the executables
+ JAVACMD="$JAVA_HOME/jre/sh/java"
+ else
+ JAVACMD="$JAVA_HOME/bin/java"
+ fi
+ if [ ! -x "$JAVACMD" ] ; then
+ die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+ fi
+else
+ JAVACMD="java"
+ which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+fi
+
+# Increase the maximum file descriptors if we can.
+if [ "$cygwin" = "false" -a "$darwin" = "false" ] ; then
+ MAX_FD_LIMIT=`ulimit -H -n`
+ if [ $? -eq 0 ] ; then
+ if [ "$MAX_FD" = "maximum" -o "$MAX_FD" = "max" ] ; then
+ MAX_FD="$MAX_FD_LIMIT"
+ fi
+ ulimit -n $MAX_FD
+ if [ $? -ne 0 ] ; then
+ warn "Could not set maximum file descriptor limit: $MAX_FD"
+ fi
+ else
+ warn "Could not query maximum file descriptor limit: $MAX_FD_LIMIT"
+ fi
+fi
+
+# For Darwin, add options to specify how the application appears in the dock
+if $darwin; then
+ GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\""
+fi
+
+# For Cygwin, switch paths to Windows format before running java
+if $cygwin ; then
+ APP_HOME=`cygpath --path --mixed "$APP_HOME"`
+ CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
+
+ # We build the pattern for arguments to be converted via cygpath
+ ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null`
+ SEP=""
+ for dir in $ROOTDIRSRAW ; do
+ ROOTDIRS="$ROOTDIRS$SEP$dir"
+ SEP="|"
+ done
+ OURCYGPATTERN="(^($ROOTDIRS))"
+ # Add a user-defined pattern to the cygpath arguments
+ if [ "$GRADLE_CYGPATTERN" != "" ] ; then
+ OURCYGPATTERN="$OURCYGPATTERN|($GRADLE_CYGPATTERN)"
+ fi
+ # Now convert the arguments - kludge to limit ourselves to /bin/sh
+ i=0
+ for arg in "$@" ; do
+ CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -`
+ CHECK2=`echo "$arg"|egrep -c "^-"` ### Determine if an option
+
+ if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then ### Added a condition
+ eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"`
+ else
+ eval `echo args$i`="\"$arg\""
+ fi
+ i=$((i+1))
+ done
+ case $i in
+ (0) set -- ;;
+ (1) set -- "$args0" ;;
+ (2) set -- "$args0" "$args1" ;;
+ (3) set -- "$args0" "$args1" "$args2" ;;
+ (4) set -- "$args0" "$args1" "$args2" "$args3" ;;
+ (5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;;
+ (6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;;
+ (7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;;
+ (8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;;
+ (9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;;
+ esac
+fi
+
+# Split up the JVM_OPTS And GRADLE_OPTS values into an array, following the shell quoting and substitution rules
+function splitJvmOpts() {
+ JVM_OPTS=("$@")
+}
+eval splitJvmOpts $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS
+JVM_OPTS[${#JVM_OPTS[*]}]="-Dorg.gradle.appname=$APP_BASE_NAME"
+
+exec "$JAVACMD" "${JVM_OPTS[@]}" -classpath "$CLASSPATH" org.gradle.wrapper.GradleWrapperMain "$@"
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+@if "%DEBUG%" == "" @echo off
+@rem ##########################################################################
+@rem
+@rem Gradle startup script for Windows
+@rem
+@rem ##########################################################################
+
+@rem Set local scope for the variables with windows NT shell
+if "%OS%"=="Windows_NT" setlocal
+
+@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+set DEFAULT_JVM_OPTS=
+
+set DIRNAME=%~dp0
+if "%DIRNAME%" == "" set DIRNAME=.
+set APP_BASE_NAME=%~n0
+set APP_HOME=%DIRNAME%
+
+@rem Find java.exe
+if defined JAVA_HOME goto findJavaFromJavaHome
+
+set JAVA_EXE=java.exe
+%JAVA_EXE% -version >NUL 2>&1
+if "%ERRORLEVEL%" == "0" goto init
+
+echo.
+echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+echo.
+echo Please set the JAVA_HOME variable in your environment to match the
+echo location of your Java installation.
+
+goto fail
+
+:findJavaFromJavaHome
+set JAVA_HOME=%JAVA_HOME:"=%
+set JAVA_EXE=%JAVA_HOME%/bin/java.exe
+
+if exist "%JAVA_EXE%" goto init
+
+echo.
+echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME%
+echo.
+echo Please set the JAVA_HOME variable in your environment to match the
+echo location of your Java installation.
+
+goto fail
+
+:init
+@rem Get command-line arguments, handling Windowz variants
+
+if not "%OS%" == "Windows_NT" goto win9xME_args
+if "%@eval[2+2]" == "4" goto 4NT_args
+
+:win9xME_args
+@rem Slurp the command line arguments.
+set CMD_LINE_ARGS=
+set _SKIP=2
+
+:win9xME_args_slurp
+if "x%~1" == "x" goto execute
+
+set CMD_LINE_ARGS=%*
+goto execute
+
+:4NT_args
+@rem Get arguments from the 4NT Shell from JP Software
+set CMD_LINE_ARGS=%$
+
+:execute
+@rem Setup the command line
+
+set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar
+
+@rem Execute Gradle
+"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS%
+
+:end
+@rem End local scope for the variables with windows NT shell
+if "%ERRORLEVEL%"=="0" goto mainEnd
+
+:fail
+rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of
+rem the _cmd.exe /c_ return code!
+if not "" == "%GRADLE_EXIT_CONSOLE%" exit 1
+exit /b 1
+
+:mainEnd
+if "%OS%"=="Windows_NT" endlocal
+
+:omega
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+ext {
+
+ jenaVersion = "2.11.1"
+ springVersion = "3.2.4.RELEASE"
+ jettyVersion = "9.1.0.v20131115"
+
+ libraries = [
+ jena : "org.apache.jena:jena-arq:${jenaVersion}",
+ cli: "commons-cli:commons-cli:1.2",
+ utils : [ 'commons-io:commons-io:1.4',
+ 'com.google.guava:guava:12.0',
+ 'joda-time:joda-time:2.1',
+ 'org.apache.commons:commons-math3:3.2',
+ 'org.apache.commons:commons-lang3:3.1'
+
+
+
+ ],
+ sqlutils : [
+ 'net.sf.jsqlparser:jsqlparser:0.8.1.SPARQLMAP-SNAPSHOT',
+ 'com.jolbox:bonecp:0.8.0.RELEASE',
+ 'net.sf.supercsv:super-csv:2.1.0',
+ 'org.hsqldb:sqltool:2.3.2'
+
+
+
+ ],
+ spring: [ dependencies.create("org.springframework:spring-web:${springVersion}") {exclude(module: 'commons-logging')},
+ "org.springframework:spring-jdbc:${springVersion}",
+ "org.springframework:spring-test:${springVersion}"
+ ],
+
+ springwebmvc: "org.springframework:spring-webmvc:${springVersion}",
+
+ servletapis: [ 'javax.servlet:servlet-api:2.4'],
+
+ jetty: [ dependencies.create("org.eclipse.jetty:jetty-runner:${jettyVersion}"){transitive = false}],
+
+ provdbs: [ 'org.hsqldb:hsqldb:2.3.2',
+ 'org.postgresql:postgresql:9.2-1002-jdbc4'],
+
+ otherdbs: [ 'mysql:mysql-connector-java:5.1.11'],
+
+ junit: "junit:junit:4.11"
+
+ ]
+
+
+
+}
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